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2 that the 3'UTR of CPSF6 contains a miR-125b-binding site that is conserved across several mammalian
4 rformed mutagenesis to compromise the Zn(2+)-binding site and observed that this change severely hamp
5 within its CDR3 loop, which harbors a Zn(2+)-binding site that substitutes for a loop-stabilizing dis
6 transmembrane helices forming the two Ca(2+)-binding sites and the cytosolic headpiece mediating ATP
9 the four regions of hCP that serve as Ca(2+)-binding sites, (ii) determine the binding stoichiometry
11 he single canonical conserved 3' UTR miR-290-binding site of Pfn2 or overexpression of the Pfn2 open
12 d in the primary sequence occupies the IP(3)-binding site and competitively inhibits IP(3) binding.
13 ntified and characterized a canonical 14-3-3-binding site (site 1) within the flexible, structurally
15 eas a reporter carrying a mutated miR-144-3p-binding site exhibited less sensitivity toward endogenou
16 covered an evolutionarily conserved let-7-5p-binding site within the chicken Chd7 gene and its human
21 rthosteric site, a putative second bile acid-binding site with allosteric properties and structural f
23 In the proposed model, the N-terminal actin-binding site of leiomodin can act as a "swinging gate" a
24 Bundling is known to require multiple actin-binding sites, yet small-angle X-ray scattering experime
26 hat the correct positioning of a single AggR-binding site is sufficient to confer AggR-dependence.
28 occur at the level of loop C-at the agonist-binding sites-and the loops at the interface between the
30 dominantly located at five reported antibody-binding sites, and within or close to the HA receptor bi
31 nged epitope residues confirmed the antibody-binding sites and revealed strongly reduced IgE reactivi
34 al-luciferase assay confirmed that this ATF4-binding site is indeed required for transcriptional up-r
35 A linked BchL dimer with one defective ATP-binding site does not support protochlorophyllide reduct
36 49A drastic shift of Walker A encroached ATP-binding site, whereas the site remained occupied by ADP
37 served cysteine residue within the FGFR4 ATP-binding site at position 552, two positions beyond the g
38 rs has been extremely challenging as its ATP-binding site shares high similarity with CDK1, a related
39 ribed RecBCD mutants altered in the RecB ATP-binding site also have this property, but uninhibited wi
40 ; computation docks NSAC1003 into RecB's ATP-binding site, suggesting NSAC1003 acts directly on RecB.
41 cluding residue Arg 3, which is near the ATP-binding site in sequence, is critical for degradation by
42 inhibitor that binds selectively to the ATP-binding site of the D2 domain, although both the D1 and
45 are predicted to have reduced numbers of ATP-binding sites, which potentially alters receptor functio
46 However, due to conservation of their ATP-binding sites, development of selective agents has remai
48 teraction, we localized the TGFbeta- and BMP-binding site in MAGP-1 to a 19-amino acid-long, highly a
49 in live B. burgdorferi, and a specific BpuR-binding site was mapped 5' of the sodA open reading fram
51 ient fibroblasts, a subset of pS22-Lamin A/C-binding sites were lost, whereas new pS22-Lamin A/C-bind
57 vergence in the residues at its carbohydrate-binding sites, which makes it a promising candidate for
59 stent with general beta-trefoil carbohydrate-binding sites (alpha, beta), and also a unique PMT2-subf
60 re fully functional despite their carotenoid-binding sites being occupied by astaxanthin instead of b
61 difications of FHL1- or both FHL1- and CD2AP-binding sites remain viable and develop spreading infect
64 lar recognition of cognate DNA and chromatin-binding sites, suggesting underlying cis-element cluster
68 s an ADP backbone this may extend beyond CoA-binding sites and include abundant Rossmann-fold motifs
69 nalysis of the data allowed pinpointing CodY-binding sites at close to single-nucleotide resolution.
73 logue to occupy both substrate- and cofactor-binding sites of NTMT1, but the bisubstrate analogue wit
75 -invariant domain boundary-containing a CTCF-binding site (CBS) and a transcription start site (TSS)-
77 tides ('msR4Ms') designed to mimic the CXCR4-binding site to MIF, selectively bind MIF with nanomolar
83 ing the homologous strand at a secondary DNA-binding site, which frees the complementary strand to sa
84 C4 and mutagenesis studies show that the DNA-binding site and the histone/ATPase binding site of CW a
85 e steps result in the interconversion of DNA-binding sites in the catalytic core of condensin, formin
87 YY1 responsive element mapped not to YY1 DNA-binding sites in the HTLV-1 LTR but to the R region.
88 ues 22-31 that ultimately broadened the drug-binding site of AM2 S31N inhibitor 4, which spans residu
89 eport a 2.1- angstrom structure and the drug-binding site of E's transmembrane domain (ETM), determin
92 When associated, the two strands form a dye-binding site, followed by an increase in fluorescence of
95 tial expression is due to an extra C/EBPbeta-binding site in the PRMT1 promoter of individuals carryi
100 hosphorylation, contains the secondary eIF4E-binding site and three other phospho-sites, whose mechan
102 f NAD(+) MS-based mapping identified an Fdx1-binding site at the junction of HoxE and HoxF, adjacent
105 1-to-2 stoichiometry with two distinct FtsX-binding sites located within an antiparallel coiled coil
106 is187 coordinate a Zn2+ adjacent to the FXII-binding site, and a comparison with the ligand-free gC1q
107 ng substrate DNA strand containing five GAL4-binding sites revealed that GAL4-VVD randomly moved on t
108 Computational models predicted a GAT1508-binding site validated by experimental mutagenesis exper
109 ccupancy of GATA-1, OGT, and OGA at the GATA-binding site of the lysosomal protein transmembrane 5 (L
110 membrane helix 6 (TM6) alter the glutathione-binding site and the associated substrate-binding cavity
111 nd is only partially dependent on the glycan-binding site of CRT, which is generally relevant to subs
113 While alternating access of sugar- and H(+)-binding sites to either side of the membrane is driven b
114 mutants targeting the substrate- and NAD(H)-binding sites identifies key residues in the active site
115 q, together with NMR analysis of the H3K4me3-binding sites of the PHD fingers from PHF23, KDM5A and B
116 ent effort to recognize nucleotide- and heme-binding sites with a comparable accuracy to highly speci
117 chrome reductases also possess atypical heme-binding sites, the NrfA nitrite reductase (CXXCK) and th
121 helices from each monomer, with three Zn(II)-binding sites, two of which occupy the active sites, whe
122 this article, we describe that the integrin-binding site of human CD40L is predicted to be located i
124 ence identity, the NHE9 architecture and ion-binding site are remarkably similar to distantly related
125 al the conserved architecture of the NHE ion-binding site, their elevator-like structural transitions
129 also discover a distant (25 angstrom) ligand-binding site unique to SARS-CoV-2, which can alternative
135 find that the base pairs close to the ligand-binding site become stronger upon ligand binding, wherea
136 cribe how structural changes from the ligand-binding site can be transmitted to the central ion-condu
137 mation on the chemical structure, the ligand-binding site, the direction of modulation, the potency,
141 Fast and accurate classification of ligand-binding sites in proteins with respect to the class of b
142 ransforms the molecular structures of ligand-binding sites to 2D Voronoi diagrams, which are then use
146 icularly to the NBDs and its putative ligand-binding sites face the transporter to likely modulate AT
148 Our results suggest that the two ligand-binding sites are potentially controlled by each other d
151 hic alpha-helices h1 and h3 comprise a lipid-binding site that is partially pre-formed in solution, i
152 the membrane through the canonical CRD lipid-binding site (CRD beta7-8), as well as an alternative in
153 mitoylation that directly occupies its lipid-binding site and inhibits TEAD-mediated transcription in
157 selectively coordinates the putative lithium-binding site results in a dramatic 100-fold reduction in
158 use intact proteins to show that the lysine-binding site of K2(hPg) is a major determinant of the ac
160 mall-molecule inhibitor targeting the lysine-binding site of KIV-10 can combat the pathophysiological
162 tructures and identify two conserved mannose-binding sites, which are consistent with general beta-tr
163 ionalized the scaffold by installing a metal-binding site consisting of four glutamate residues close
164 ic characterization of a tri-aspartate metal-binding site previously identified on the three-fold sym
165 have previously identified a putative metal-binding site on the inner surface of the Rhodospirillum
166 turbations of His(232), just below the metal-binding site along the proton exit route, differentially
167 ant in which aspartate residues in the metal-binding site of the polymerase domain were replaced by a
168 required for alternating access of the metal-binding site to the external or cytosolic environment.
169 nt functions: one conserved transition metal-binding site acts as the transport site essential for ac
170 ial for activity, whereas the variable metal-binding site is required for hZIP4's optimal activity pr
171 ded that the two physically associated metal-binding sites in the BMC of human ZIP4 (hZIP4) zinc tran
172 The results indicate three critical metal-binding sites: two Mn and one Ca, with occupation of the
174 upon sensing copper at the interfacial metal-binding sites in CusS's periplasmic sensor domains, prio
175 he efficiency of the method by mapping metal-binding sites of Zn(7-x)MT species using a bottom-up MS
178 uirement of correct occupancy of these metal-binding sites coupled to a slow restructuring of the pro
179 ular dynamics simulations identify two metal-binding sites within the N and C domains of ferroportin.
180 eractions by disrupting each predicted miRNA-binding site by CRISPR-Cas9 genome editing in C. elegans
181 p of pairwise interactions between 171 miRNA-binding sites and identified synergistic and redundant e
182 X-ray crystal structure revealed a monobody-binding site centered on the alpha4 helix of the MLKL 4H
184 ly associated with bHLH motifs, strong Myod1-binding sites were co-enriched with non-bHLH motifs, pos
185 ion of Ca(2+) to regulate exposure of myosin-binding sites and, thus, myosin cross-bridge recruitment
187 se to DNA damage and occupancy of the NAD(+)-binding site, the interaction of HPF1 with PARP1 or PARP
189 and efficacy at three discrete neurosteroid-binding sites determine whether a neurosteroid has poten
190 fic binding to three identified neurosteroid-binding sites in the alpha(1)beta(3) GABA(A) receptor (G
192 ystallography uncovered an additional nickel-binding site at the dimer interface, which binds Ni(II)
193 iver, we show that proximity to a nucleotide-binding site increases the risk of N-acetylation and ide
194 apping it with the Sec7d from ARF nucleotide-binding site opener (ARNO)/cytohesin-2, a plasma membran
196 WEW, which encodes a coiled-coil, nucleotide-binding site and leucine-rich repeat protein (CNL).
199 ation by acyl-CoAs is enhanced by nucleotide-binding sites and may contribute to higher stoichiometry
200 -malonylation by malonyl-CoA near nucleotide-binding sites which overlaps with in vivo N-acetylation
203 Furthermore, an additional oligosaccharide-binding site 20 angstrom away from the catalytic pocket
204 More strikingly, we found an oligosaccharide-binding site at the surface of domain A, distant from th
206 hieved by ColN having multiple distinct OmpF-binding sites, one located within its central globular d
209 ecise global distinction between p53-and p63-binding sites, recognition motifs, and potential co-fact
210 nal repression of Wapl through a single Pax5-binding site by recruiting the polycomb repressive compl
213 owever, this well-established single peptide-binding site alone has made it difficult to explain the
215 the N-terminal alpha-helix near the peptide-binding site while increasing flexibility of the peptide
217 experiments indicated that the canonical PLB-binding site (comprising transmembrane helices M2, M4, a
220 the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfami
221 d by more than 20 angstrom and the G-protein-binding site is a shallow groove rather than a cleft.
223 peak calling correspond to annotated protein-binding sites and/or have stable predicted secondary str
227 ydrogen-bond networks connecting the quinone-binding site to the transmembrane subunits are found to
229 We recently identified an additional Rap1-binding site in the talin-1 F1 domain that makes a great
230 Previous work identified a low-affinity Rap1-binding site in the talin-1 F0 domain that makes a small
233 ve charge around the haemagglutinin receptor-binding site show increases and decreases in avidity, re
234 ility: it modulates exposure of its receptor-binding site and subsequently undergoes complete structu
235 to open conformations to expose its receptor-binding site and, subsequently, from prefusion to postfu
237 ed accessibility of epitopes in the receptor-binding site (RBS) for neutralizing mAbs, resulting in e
238 ysis of both RBDs suggests that the receptor-binding site for QX is located at a different location o
239 A/6B via a region homologous to the receptor-binding site in Clostridioides difficile toxin B (TcdB),
242 d preserves steric accessibility to receptor-binding sites, likely influencing antigen binding and ef
243 ic peptides containing the HPV16 L2 retromer-binding site and a cell-penetrating sequence enter cells
245 demonstrate that RBP, with a tunable ribose-binding site and further engineered to bind xenon, enabl
249 te that Mn(2+) competes with Fe(2+) for rRNA-binding sites and that protection of ribosomes from Fe(2
253 RBS, using the general design of 9-O-Ac-Sia-binding sites as blueprint, backed-up by automated ligan
257 in immunoprecipitation-sequencing to map SRF-binding sites in human coronary artery SMC, showing that
258 R beta(+)-alpha(-) subunit interface steroid-binding site and identify several steroid PAMs that act
260 ce for intersubunit and intrasubunit steroid-binding sites in the GABA(A)R transmembrane domain, but
262 presence of a putative allosteric substrate-binding site in a hydrophobic pocket on the enzyme surfa
263 its analogues bind to the central substrate-binding site of SERT, stabilize the outward-open conform
265 port pathway extends from the MlaE substrate-binding site, through the channel of MlaD, and into the
268 ecause DapF (Ct) utilizes a shared substrate-binding site for both racemase and epimerase activities,
270 structures have revealed a single substrate-binding site in the SBD that binds a single segment of a
281 den from nuclease attack, whereas the target-binding sites are exposed to allow delivery to the cance
283 the contribution of genetic variation in TF-binding sites to disease heritability is challenging, as
284 " mechanism to design two cooperative, three-binding-site receptors starting from a single-site-and t
285 ith voltage-shifting mutations and the toxin-binding site of human Na(V)1.7, an attractive pain targe
286 eractions that extend into the peptidyl tRNA-binding site and towards synergistic binders that occupy
287 he binding interface between the tropomyosin-binding site of cardiac leiomodin and the N-terminus of
292 ty of regulatory sequences, as ErfA- and Vfr-binding sites were found to have evolved specifically in
294 ; 2) the M1 domain that harbors the vinculin-binding site is unfolded at ~6 pN; and 3) unfolding of t
295 th UB-421, an antibody that blocks the virus-binding site on human CD4+ T cells, could induce sustain
296 lung adenocarcinoma risk by creating an YY1-binding site to suppress DCBLD1 expression, which may se
298 ese studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domai
299 u(2+) We also demonstrate that multiple zinc-binding sites on tau are involved in the LLPS-promoting
300 ormational changes in the region of the Zn2+-binding site reveal an allosteric basis for Zn2+ modulat