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8 etic perturbation that cellular nucleic acid-binding protein (CNBP) and La-related protein 1 (LARP1),
11 ity and 1-anilinonaphthalene-8-sulfonic acid-binding experiments, comparing original BEAT, mutated BE
14 ce for the critical role of the Tarp F-actin-binding domains in host cell invasion and for the Tarp e
15 ducing conformational flexibility of F-actin-binding domains via interdomain cross-talk and consequen
16 n's interactions with myosin and other actin-binding proteins are essential for cellular viability in
17 ing regions of myosin assures a proper actin-binding interface and active site have formed before pro
18 tin monomers directly, formins use the actin-binding protein profilin to dynamically load actin monom
20 that increase the surface area of the actin-binding regions promoting myosin interaction with actin,
21 with functional assays to identify the actin-binding residues in FL villin that regulate its filament
26 resent the synthesis and evaluation of anion-binding properties of 12 new receptors from the unclosed
28 ns, such as poly-reactivity and long antigen-binding loops, which are usually under negative selectio
30 ure of the DNA-binding domain of a model ASO-binding protein PC4, in complex with a full PS 2'-OMe DN
33 ndidate genes, glycogen synthase (glys), atp-binding cassette transporter (atp), and low-density lipo
34 etion was not a consequence of increased ATP-binding cassette subfamily G member 5/8 activity given t
35 n the microtubule-bound state by slowing ATP-binding, resulting in high-force production at both homo
38 an irreversible bond with Cys 215 in the ATP-binding pocket, a residue that is not present in human C
40 volution of chlorosis, describe a biliverdin-binding protein in vertebrates, and introduce a function
43 for calcium management (calmodulin, calcium-binding proteins), pH regulation (V-type proton ATPase),
44 ogin (SCGN) is a recently discovered calcium-binding protein belonging to the group of EF-hand calciu
49 Here, we found that the noncanonical 5' cap-binding protein eIF3d was activated in response to metab
52 BP80 have been thought to constitute the cap-binding complex (CBC) that is acquired co-transcriptiona
53 e initiation stage by competing with the cap-binding initiation factor complex, eIF4F, restricting in
55 eracts with androgen receptor (AR) and CCCTC-binding factor (CTCF), and modulates AR-dependent gene e
56 n this report, we demonstrate that the CCCTC-binding factor (CTCF), a crucial chromatin organizer, is
58 ith an atypical chemokine receptor chemokine-binding protein 2 variant V41A (ACKR2-V41A; rs2228467).
59 cation and characterization of the chemokine-binding interface of evasins could thus inspire the deve
60 arrangements, disorder within the chromatin-binding proteins facilitates promiscuous binding to a wi
63 nalysis of the data allowed pinpointing CodY-binding sites at close to single-nucleotide resolution.
66 ntaining polyglutamine tracts including core-binding factor alpha1, mediator subunit 12, transcriptio
68 t the promoter, recruits the C/EBPbeta (CREB-binding protein) and CBP transcription factors and activ
70 tides ('msR4Ms') designed to mimic the CXCR4-binding site to MIF, selectively bind MIF with nanomolar
73 B-dependent phosphorylation of the SAF-A DNA-binding domain; failure to execute this pathway leads to
74 if1 stimulated its helicase, ATPase, and DNA-binding activities, whereas maintaining its substrate pr
75 ranscriptional regulation is mediated by DNA-binding transcription factors that bind to regulatory ge
76 Cys2His2 zinc finger is the most common DNA-binding domain expanding in metazoans since the fungi hu
77 mall changes outside of highly conserved DNA-binding regions can lead to profound changes in protein
78 ious DNA motifs are mediated by its flat DNA-binding surface, which is centered on a short loop spann
83 s demonstrate that YaaA is a new type of DNA-binding protein associated with the oxidative stress res
84 Missense mutations in cancers in the p53 DNA-binding and tetramerization domains cement the importanc
87 NA sequences containing their respective DNA-binding motifs and identify preferential motif arrangeme
88 ur findings show that even though UAF1's DNA-binding activity is redundant with that of RAD51AP1 in F
90 pressing ALS-linked gene mutants for TAR DNA-binding protein (TDP-43) and superoxide dismutase 1 (SOD
91 ns of pathogenic deposits containing TAR DNA-binding protein 43 (TDP-43) are evident in the brain and
94 ocks MRE11 degradation in vitro, and the DNA-binding ability of CST is required for blocking MRE11-me
96 re, we report a crystal structure of the DNA-binding domain of a model ASO-binding protein PC4, in co
100 ently suggests that the knowledge of the DNA-binding properties of the proteins is in itself not suff
101 directly, using as the primary probe the DNA-binding species with the binding site inactivated and eG
102 en by favorable interactions between the DNA-binding surface of the DBD and the multiple phosphorylat
104 nding to the same consensus motif, their DNA-binding syntax is different, suggesting discriminatory f
106 rminal region a previously unappreciated DNA-binding domain that exhibits specific binding to G-quadr
108 we show that variant PRC1 complexes with DNA-binding activities occupy target sites independently of
109 through YAP association with the TEA domain-binding motif in the promoter region of inflammatory cyt
111 upies the strong double-stranded DNA (dsDNA)-binding surface on cGAS and sterically prevents cGAS fro
113 a-interface, mapped to Switch I and effector-binding regions, (ii) alpha-interface at the allosteric
115 s is maintained by sterol regulatory element-binding proteins (SREBPs), membrane-bound transcription
116 e transcription factor cAMP response element-binding protein (CREB) to enhance the expression of prot
117 found that loss of the cAMP response element-binding protein (CREB) transcription factor significantl
118 eramide-induced RIP of cAMP response element-binding protein 3-like 1 (CREB3L1) also involves RAT.
120 d by recruitment of the microtubule plus end-binding protein EB1/EBP-2 around the wound and actin rin
121 the G allele interacted with CCAAT/enhancer-binding protein beta transcription factor (TF), while th
122 lls revealing upregulation of CCAAT/enhancer-binding protein homologous protein and immunoglobulin he
123 that NRARP interacts with lymphoid enhancer-binding factor 1 (LEF1) and potentiates Wnt signaling in
124 in stress marker insulin-like growth factor-binding protein 1 (IGFBP-1), were observed with 12-D(3)N
125 oproteinase-2 and insulin-like growth factor-binding protein 7 was measured at H0, H6, H12, and H24.
126 te assembly uncovered a transcription factor-binding motif for ZNF263, a C2H2 zinc finger protein.
128 red nonessential either by their high fibrin-binding parameters and short lifetimes or their initial
130 experiments, and inhibition analysis of GD3-binding toward Siglec-7 using synthetic sialoglycoconjug
134 shorter and the bilobed cleft of the glycine-binding domain in GluN1 is more closed when bound to gly
135 We first demonstrate, via a [(35)S]GTPgammaS-binding assay, that drug activity is retained after conj
136 , which upregulates genes encoding guanylate-binding proteins (GBPs) and inducible nitric oxide synth
137 nd therapeutic interventions such as heparin-binding peptides (HBPs), which are used for other cases,
138 cterized one of the newly-discovered heparin-binding proteins, C-type lectin 14a (CLEC14A), a member
139 bstrate selectivity of ADAM17 toward Heparin-binding epidermal growth factor like growth factor (HB-E
141 m these additional factors together with HLA-binding properties by using machine-learning algorithms
147 er that covalently binds with FMN and Cu(II)-binding pocket is located at the interface of the NfoR d
148 ay-based platform yields high-quality MHC-II-binding peptide datasets that can be used to improve the
149 IP-seq reveals that global effects on Pol II-binding are mutually rescued by prp5-GAR and spt8Delta.
152 etween M6A, an intrinsically disordered iron-binding domain, and an iron oxide particle was visualize
153 endoplasmic reticulum localization, kinesin-binding or phosphoinositide-binding properties abrogated
155 he protein's structure, dynamics, and ligand-binding activity in both its soluble and membrane-anchor
156 also discover a distant (25 angstrom) ligand-binding site unique to SARS-CoV-2, which can alternative
158 -directed mutagenesis and competitive ligand-binding analyses revealed that DPO and Ala-AA occupy the
159 y the presence of large extracellular ligand-binding domains (LBDs) and constitutive homo/heterodimer
160 eta11-12 linker in the extracellular, ligand-binding domain is an integral component of the desensiti
161 ing small molecule binding, measuring ligand-binding affinity, monitoring protein folding and unfoldi
163 suggests the existence of an optimal ligand-binding pocket conformation for capsaicin-mediated TRPV1
164 ormation and occupies the orthosteric ligand-binding pocket enabled by a conformational change that d
166 icularly to the NBDs and its putative ligand-binding sites face the transporter to likely modulate AT
167 form of TNFR1 with a mutation in the ligand-binding CRD2 subdomain retained the monomer-to-dimer rat
169 ed that Fabp5, an abundant cytoplasmic lipid-binding protein found in brain endothelial cells, makes
170 gest how changes in the association of lipid-binding caveolar proteins upon flattening of caveolae co
171 contemporary view of how proteolysis, lipid-binding activity and interactions with polysaccharides a
173 report that, in mammalian cells, NF2's lipid-binding ability is critical for its function in activati
177 These findings characterize hGBP1 as an LPS-binding surfactant that destabilizes the rigidity of the
178 ved through a hydrophobic trimethyl-L-lysine-binding 'cage' formed by BAHCC1(BAH), mediating colocali
180 ave shown that 5-HT(3A)-ICD fused to maltose-binding protein (MBP) directly interacts with RIC-3, wit
188 p of pairwise interactions between 171 miRNA-binding sites and identified synergistic and redundant e
189 eractions by disrupting each predicted miRNA-binding site by CRISPR-Cas9 genome editing in C. elegans
190 igh-throughput engineering of small-molecule-binding aptamers to acquire those with improved binding
191 target of Myb protein 1 (Stm1; SERPINE1 mRNA-binding protein 1 [SERBP1] in mammals), and recently, la
192 riguingly, Cep63 fused to a microtubule (MT)-binding domain of Cep57 functioned in concert with Cep15
194 However, STEAP1 lacks an intracellular NADPH-binding domain and does not exhibit cellular ferric redu
195 rvation and structural similarity in the NES-binding cleft region, (Sc)CRM1 exhibits 16-fold lower bi
197 R, protease-activated receptor 2, nucleotide-binding domain, leucine-rich-containing family, pyrin do
198 munication between the actin- and nucleotide-binding regions of myosin assures a proper actin-binding
199 WEW, which encodes a coiled-coil, nucleotide-binding site and leucine-rich repeat protein (CNL).
200 iated by the intracellular cyclic nucleotide-binding domain (CNBD) connected to the pore-forming S6 t
201 g a detailed multi-genome-derived nucleotide-binding leucine-rich repeat protein repertoire involved
202 identify epigenetic regulation of nucleotide-binding leucine rich repeat or Nod-Like Receptor (NLR) g
203 ivate innate immune cells through nucleotide-binding oligomerization domain (NOD) 1 and/or NOD2 recep
204 Furthermore, an additional oligosaccharide-binding site 20 angstrom away from the catalytic pocket
205 OSBPL1 encodes the full-length oxysterol-binding protein-related protein ORP1L, which transports
206 the opposing functions of BRCA1 and the p53-binding protein 1 (53BP1)-associated complex in DNA rese
207 nal repression of Wapl through a single Pax5-binding site by recruiting the polycomb repressive compl
208 rands and crosslink them: class A penicillin-binding proteins (aPBPs) and complexes of SEDS proteins
209 role of the bifunctional class A penicillin-binding proteins (aPBPs) as well as the L,D-transpeptida
210 or peptidoglycan crosslinking by penicillin-binding protein 2 (PBP2) are unable to initiate polarize
211 ent peptidoglycan crosslinking by penicillin-binding protein 3 (PBP3/FtsI) initiate polarized divisio
212 between adjacent wall peptides by penicillin-binding proteins to confer robustness and flexibility.
213 single amino acid replacements in penicillin-binding protein 2X (PBP2X), a major target of beta-lacta
214 single amino acid substitution in penicillin-binding protein PBP2X that conferred a 2-fold increased
215 DNA while its CIP (Ctf4-interacting peptide)-binding helical domains remain available to recruit part
216 positions are component parts of the peptide-binding pocket 7 (P7) of the HLA-DR heterodimer, suggest
217 vel its details, we identified all phosphate-binding protein lineages in the Evolutionary Classificat
218 ization, kinesin-binding or phosphoinositide-binding properties abrogated the regenerative effects.
219 tent with adipogenesis, and the phospholipid-binding protein annexin A3 (AnxA3), a negative regulator
225 ften function as molecular decoys of protein-binding partners or nucleic acid targets, while enzymati
227 terference of biomolecular interactions, PSA-binding ligands have important implications for both bio
229 ydrogen-bond networks connecting the quinone-binding site to the transmembrane subunits are found to
230 se (NOX2) subunit, p67(phox), and to the RAC-binding domain of p21-activated kinase, consistent with
231 chromatin architecture and genome-wide RALY-binding pattern reveal insights into its cooperative int
234 IgM, A, and G Ab responses against receptor-binding domain are significantly correlated to the disea
235 sorbent assay utilizing recombinant receptor-binding domain (RBD) of the SARS-CoV-2 spike protein was
236 an extended loop in the C-terminal receptor-binding domain (HC) of BoNT/B (HC/B) has been proposed t
237 between those directed against the receptor-binding domain (RBD) and those directed against the N-te
239 rotein (GFP), siderocalin (Scn), and retinol-binding protein 4 (RBP4) as model proteins and screened
240 ritin, soluble transferrin receptor, retinol-binding protein (RBP), 25-hydroxy vitamin D, folate, and
242 ffold with basic patches constituting an RNA-binding surface exhibiting a preference for binding doub
245 (MLOs), which majorly consist of RNA and RNA-binding proteins and are formed via liquid-liquid phase
246 DZIP3/hRUL138 is a poorly characterized RNA-binding RING E3-ubiquitin ligase with functions in embry
248 could validate RBMS1, a barely described RNA-binding protein, as a new target gene for oncogenic miR-
251 excitement around ProQ as a novel global RNA-binding protein, and its potential to serve as a matchma
252 ndividual guide RNAs (gRNA), we identify RNA-binding proteins (RBPs) that influence the formation of
255 Finally, we observed a DNV burden in RNA-binding-protein regulatory sites (OR = 1.13, 95% CI 1.1-
258 our results showed increased binding of RNA-binding protein CUGBP1 with occludin and E-cadherin gene
259 s and are enriched with binding sites of RNA-binding proteins, RNA structure-changing variants and tr
260 ition for binding sites among protective RNA-binding proteins and decay factors, PTBP1 promotes displ
261 to investigate viral genome replication, RNA-binding affinity, ATP hydrolysis activity, and helicase-
262 ere, we report the identification of the RNA-binding protein HuR/ELAVL1 as a central oncogenic driver
265 enome-scale collection of RBPs and their RNA-binding domains (RBDs) and assessed their specificities
268 ion by NMR spectroscopy, we identify the SAM-binding region and observe changes in the dynamics of th
269 othelial growth factor (VEGF) and semaphorin-binding receptor Neuropilin-1 (Nrp-1) emerge as crucial
270 ompete identifies a GC-rich region as SERBP1-binding motif; subsequent genomic and functional analyse
272 ty in a panel of variants of the Car9 silica-binding peptide (DSARGFKKPGKR) fused to the C-terminus o
273 -membrane interaction and fully map the site-binding energetics of Syt1 both in the absence and prese
274 utively inhibits I(Kv1.5) Disrupting the Src-binding motif of Kv1.5 through N-terminal truncation or
275 on protein A (RPA), a major eukaryotic ssDNA-binding protein, is essential for all metabolic processe
276 ealed a large, membrane-accessible substrate-binding pocket that alternately faced the ER lumen and c
278 ecause DapF (Ct) utilizes a shared substrate-binding site for both racemase and epimerase activities,
279 2020) discover that the C-terminal substrate-binding domain of FBXL5 contains a redox-sensitive [2Fe-
280 ariable structural features of the substrate-binding pocket that underlie the divergent evolution of
281 nly six substitutions occur at the substrate-binding surface, and the others change domain-domain int
283 bitors of non-canonical IkappaB kinases TANK-binding kinase 1 (TBK1) and IkappaB kinase epsilon (IKKe
284 esigned two cyclic peptide mimics of the TAR-binding beta2-beta3 loop sequences present in two high-a
287 t-1 bind to a pocket on the N-terminal TRAF2-binding domain of TRADD (TRADD-N), which interacts with
288 associated protein 1 (adenosine triphosphate-binding cassette subfamily C member 1 [ABCC1]) is abunda
289 why no relationship between exposure to TTR-binding compounds and circulating T4 levels in humans ha
299 n of the E3 ligase complex, such as the zinc-binding motif and N- and C-terminal regions of the prote