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1 e 5' splice site and the terminator with the 3' splice site.
2 (65) recognize a polypyrimidine tract at the 3' splice site.
3 hibiting splicing at that exon's alternative 3' splice site.
4 g components that recognize either the 5' or 3' splice site.
5 re than 13 ribonucleotides downstream of the 3' splice site.
6 idine (Py) tract consensus sequence near the 3' splice site.
7 thout formation of a splicing complex with a 3' splice site.
8 proteins through activation of the optimized 3' splice site.
9 to authentic substrates that lack a U12-type 3' splice site.
10 aring AT at the 5' splice site and AC at the 3' splice site.
11 ated at the 5' splice site, branch site, and 3' splice site.
12 S, ESSV, which regulates splicing at the vpr 3' splice site.
13 be synthesized as much as an hour before the 3' splice site.
14 efficiency caused by the intron's suboptimal 3' splice site.
15 th a preference for 70-80 nt upstream of the 3' splice site.
16 prespliceosomal complex A requires an active 3' splice site.
17 r shorter spacers between the snoRNA and the 3' splice site.
18 me appears to be unable to scan for a distal 3' splice site.
19 a sequence that highly resembles a bona fide 3' splice site.
20 nals: a 5' splice site, a branch site, and a 3' splice site.
21 tion of nucleotide 'C' at position -3 of the 3' splice site.
22 ate the recognition of weak Py-tracts at the 3' splice site.
23 ly conserved, and closely distributed to the 3' splice site.
24 ex, which assembles across the intron at the 3' splice site.
25 an ATP-dependent process requiring an intact 3' splice site.
26 cleotides from the 3'-splice site and an AAG 3'-splice site.
27 or with critical roles in recognition of the 3'-splice site.
28 ng a potential cis-regulatory element at the 3'-splice site.
29 by mutations and increased distance from the 3'-splice site.
30 e of binding of the guanosine specifying the 3'-splice site.
31 uences and their stoichiometry determine the 3'-splice site.
32 m A(C)' to A(C) appears to require an intact 3'-splice site.
33 ing (AS) by differential selection of 5' and 3' splice sites.
34 ition of exons that are flanked by the HIV-1 3' splice sites.
35 ize polypyrimidine tract signals adjacent to 3' splice sites.
36 lice site that interacts with and sequesters 3' splice sites.
37 tly inhibiting use of intron-proximal 5' and 3' splice sites.
38 nd confirmed that SF3B1 mutants use aberrant 3' splice sites.
39 by point mutations that improve their 5' or 3' splice sites.
40 of the U1/U11 site that is characteristic of 3' splice sites.
41 form long-range interactions with the 5' and 3' splice sites.
42 combinations were optimal for distinguishing 3' splice sites.
43 65 to the polypyrimidine tracts of repressed 3' splice sites.
44 0 nucleotides strongly activated alternative 3' splice sites.
45 hile allowing flexibility in the location of 3' splice sites.
46 by enhancing the binding of U2AF(65) to weak 3' splice sites.
47 for and utilize alternative branch sites and 3' splice sites.
48 ne (Py) signals preceding the major class of 3' splice sites.
49 undreds of introns with adjacent alternative 3' splice sites.
50 alternative 5' splice sites, and alternative 3' splice sites.
51 rly spliceosome components bound proximal to 3' splice sites.
52 sensus sequence preceding the major class of 3' splice sites.
53 iral late gene transcripts that contain weak 3' splice sites.
54 p chemistry of precursors with inappropriate 3'-splice sites.
55 precedented RNA motifs to select the 5'- and 3'-splice sites.
56 uired for the initial recognition of 5'- and 3'-splice sites.
57 on similarly in activating regulated 5'- and 3'-splice sites.
58 ation of Intron-Exon and Exon-Intron (5' and 3') splice sites.
59 In the case of SR45, the use of alternative 3' splice sites 21 nucleotides apart generates two alter
60 ong branch site (BS), a long distance to the 3' splice site (3' SS), and a weak polypyrimidine (Py) t
61 ctions between the 5' splice site (5'ss) and 3' splice site (3'ss) were observed in human/mouse, indi
64 ains three 5' splice sites (5' ss) and three 3' splice sites (3' ss) normally used in HPV16(+) cervic
65 ites; (iii) divergent evolution of C.elegans 3' splice sites (3'ss) and (iv) distinct evolutionary hi
66 cy distribution of mutation-induced aberrant 3' splice sites (3'ss) in exons and introns is more comp
69 d sequences of previously published aberrant 3' splice sites (3'ss) that were generated by mutations
70 s, pyrimidine-rich regions [poly(Y) tracts], 3' splice sites (3'SS), and sometimes enhancer elements.
72 or 3 B1 (SF3B1) result in selection of novel 3' splice sites (3'SS), but precise molecular mechanisms
73 or samples, we show that hundreds of cryptic 3' splice sites (3'SSs) are used in cancers with SF3B1 m
74 ith aberrant pre-mRNA splicing using cryptic 3' splice sites (3'SSs), but the mechanism of their sele
75 promoted by cytosine at rs609621 in the NSE 3' splice-site (3'ss), which is predominant in high canc
76 omyces cerevisiae spliceosome recognizes the 3'-splice site (3'SS) of precursor messenger RNA (pre-mR
77 otein interactions involving the branch site-3' splice site-3' exon region during yeast pre-mRNA spli
80 n definition" mechanism, in which the 5' and 3' splice sites (5'ss, 3'ss, respectively) are initially
81 e we show that the efficiency of splicing at 3' splice site A2, which is used to generate Vpr mRNA, i
82 ta(IVS2-654)-globin pre-mRNA such as cryptic 3' splice site, aberrant 5' splice site, cryptic branch
83 Five 5' splice sites (donor sites) and six 3' splice sites (acceptor sites) that are highly conserv
85 Our results provide a mechanism for exon 16 3' splice site activation in which a coordinated effort
87 retains the IGS extension, and with 5'- and 3'-splice site analogues that differ in their ability to
90 RNA expression and splicing at the proximal 3' splice site and enhanced Akt phosphorylation and expr
91 loosely associated tri-snRNP, sequesters the 3' splice site and prevents its interaction with the aut
92 e 5' splice site, components recognizing the 3' splice site and proteins thought to connect them.
94 ssential splicing factor that recognizes the 3' splice site and recruits the U2 snRNP to the branch p
96 ntron can inhibit splicing to the downstream 3' splice site and that this inhibition is independent o
99 ce site polymorphisms, most notably a strong 3' splice site and the presence of intronic motifs downs
100 ) binding sites, are located between the two 3' splice sites and have been identified as regulating a
101 isitely sensitive to the sequence context of 3' splice sites and to small structural differences betw
103 ringing the 5'-splice site together with the 3'-splice site and catalytic core elements at JII/III.
105 together to identify the 5 splice site, the 3 splice site, and the branchsite (BS) of nascent pre-mR
106 leic acid-binding domain, recognition of the 3' splice site, and alternative splicing of many mRNAs.
108 nriched with 5' splice sites and depleted of 3' splice sites, and exhibit high levels of U1 snRNA bin
109 be alternatively recognized as either 5' or 3' splice sites, and the dual splicing is conceptually s
110 in CA-RNA are within 50 nucleotides of 5' or 3' splice sites, and the vast majority of exons harborin
112 and the entire 3' exon, including the mutant 3' splice site, are accessible and can be removed by nuc
115 we propose a role for Cwc21p positioning the 3' splice site at the transition to the second step conf
116 at stronger Py-tracts, as required to define 3' splice sites at early stages of spliceosome assembly.
117 5' splice sites at nt 232 and nt 898 and two 3' splice sites at nt 510 and nt 3355 can be identified.
118 These chimeras contain discernable 5' and 3' splice sites at the RNA junction, indicating that the
119 ice site alternatively splices to a proximal 3' splice site (at nucleotide 3225) to express L2 or to
122 te is recognized in the absence of an active 3' splice site but that formation of the prespliceosomal
123 RNA expression and splicing at the proximal 3' splice site, but activation-rescued viral RNA express
124 lly present between the branch point and the 3' splice site by the large subunit of the essential spl
126 s splicing at several highly conserved HIV-1 3' splice sites by binding 5'-UAG-3' elements embedded w
127 The relative use of a dual site as a 5' or 3' splice site can be accurately predicted by assuming c
129 nanopore reads, we demonstrate differential 3' splice site changes associated with SF3B1 mutation, a
130 regulatory elements in 4.1R pre-mRNA govern 3' splice site choice at exon 2 (E2) via nested splicing
135 shift toward usage of the adjacent proximal 3' splice site (closer to the 5' end of the intron).
138 SV polyadenylation in the context of the NRS-3' splice site complex, which is thought to bridge the l
139 th SF3A1 mediates contact between the 5' and 3' splice site complexes within the assembling spliceoso
140 essentially a composite of canonical 5' and 3' splice-site consensus sequences, with a CAG|GURAG cor
141 Tb(3+) cleavage was redirected to the 5' and 3' splice sites, consistent with metal-dependent activat
143 modify its own pre-mRNA to create a proximal 3' splice site containing a noncanonical adenosine-inosi
144 c cells follow C. elegans consensus rules of 3' splice site definition; a short stretch of pyrimidine
148 e and stabilize a conformation competent for 3'-splice site docking, thereby promoting exon ligation.
149 actor (U2AF(65)) cooperatively recognize the 3' splice site during the initial stages of pre-mRNA spl
150 ng the AG dinucleotide that functions as the 3' splice site during the second transesterification ste
151 iously unrecognized role in the selection of 3' splice sites during the second step of splicing.
152 ZRSR2 is involved in the recognition of 3'-splice site during the early stages of spliceosome as
154 t exons splice differentially to alternative 3' splice sites far downstream in exon 2'/2 (E2'/2).
155 late RNAs and for selection of the proximal 3' splice site for BPV-1 RNA splicing in DT40-ASF cells,
156 This process involves the use of alternative 3' splice sites for the internal intron, the resulting a
159 s distinguishes the guanosine at the correct 3'-splice site from other guanosine residues, the faster
160 tic cells preferring to splice at the distal 3' splice site (furthest from the 5' end of the intron)
161 sites and the RNA structure near the 5' and 3' splice sites has fueled speculation that such protein
162 lementary mechanisms of U2AF recruitment and 3' splice site identification exist to accommodate diver
163 Bioinformatic analysis revealed that the 3' splice sites identified in three of these putative IR
164 ginine (SR)-rich proteins activate a cryptic 3' splice site in a sense Alu repeat located in intron 4
166 We found that the use of an alternative 3' splice site in intron 6 generates a unique p53 isofor
167 ted genes that spliced in-frame to a cryptic 3' splice site in the Neo coding sequence and expressed
169 165 b (resulting from alternative usage of a 3' splice site in the terminal exon) is protective for k
172 yrimidine (Py) signals of the major class of 3' splice sites in human gene transcripts remains incomp
173 ranchsites, polypyrimidine tracts and 5' and 3' splice sites in the intron databases and exonic splic
175 rol intrasplicing at a subset of alternative 3' splice sites in vertebrate pre-mRNAs to generate prot
180 ine tract between the branch point A and the 3' splice site is associated with increased exon skippin
183 stest introns are gone nearly as soon as the 3' splice site is transcribed and that introns have dist
184 dence that use of germline-specific proximal 3' splice sites is conserved across Caenorhabditis speci
185 We show that evolutionary progression of 3' splice sites is coupled with longer repressive uridin
186 onserved region between the branch point and 3'-splice site is primarily unstructured and that MBNL1
187 uence arrangements exist, however, including 3' splice sites lacking recognizable Py tracts, which ra
188 f a second CU-rich upstream of the mini-exon 3' splice site led to a decline in mini-exon splicing, i
191 how that U2AF1 mutations alter the preferred 3' splice site motif in patients, in cell culture, and i
192 inalis introns have a highly conserved 12-nt 3' splice-site motif that encompasses the branch point a
193 n conformation adopted late in splicing by a 3' splice-site mutant, invoking a mechanism for substrat
194 site of the complex, which is arrested by a 3' splice site mutation, can accept a normal 3' splice s
196 xon ligation, disrupting stem IIa suppressed 3' splice site mutations, and disrupting stem IIc impair
197 tion of exon skipping and tandem alternative 3' splice sites (NAGNAGs) were more divergent than other
199 phenotype of the A-to-G substitution in the 3' splice site of BBS8 exon 2A (IVS1-2A>G mutation) in t
200 ntisense oligonucleotide (AON) targeting the 3' splice site of ClC-1 exon 7a reversed the defect of C
203 l mutation is a single point mutation in the 3' splice site of exon 4 leading to an exon extension an
205 erence reduces the intrinsic strength of the 3' splice site of exon 7 2-fold, whereas the strength of
211 ptimal position about 70 nts upstream of the 3' splice site of the host intron is critical for effici
213 lated polymerase also accumulates around the 3' splice sites of constitutively expressed, endogenous
214 the active sites for cleavage at the 5' and 3' splice sites of precursor tRNA are contained within S
217 exon splicing with Mbnl binding near either 3' splice site or near the downstream 5' splice site, re
219 cellular transcripts that spliced to cryptic 3' splice sites present either within the targeting vect
220 her, the fusion transcripts utilized cryptic 3' splice sites present in the adjacent intron or genera
221 ted exon inclusion, whereas binding near the 3' splice site promoted either exon skipping or inclusio
222 on inclusion in neural cells while weakening 3' splice site recognition and contributing to exon skip
223 ylated SF1 loop are required for cooperative 3' splice site recognition by the SF1-U2AF(65) complex (
225 gate the molecular mechanism and dynamics of 3' splice site recognition by U2AF65 and the role of U2A
226 ght to determine how mutations affecting the 3' splice site recognition factor U2AF1 alter its normal
228 rformed in fission yeast support a model for 3' splice site recognition in which the two subunits of
230 he small subunit of U2AF, which functions in 3' splice site recognition, is more highly conserved tha
231 s is not predicted by the model for metazoan 3' splice site recognition, we sought introns for which
236 ssociations of proteins with the branch site-3' splice site region during spliceosome assembly and ca
237 in the frequency of three base pair gaps at 3' splice sites relative to nearby exon positions in bot
238 hat SR45 recruits U1snRNP and U2AF to 5' and 3' splice sites, respectively, by interacting with pre-m
240 This mutation creates a new and preferred 3' splice site, results in a 10 nt insertion in mRNA, sh
241 Our microarray analysis shows changes in 3' splice site selection at elevated temperature in a su
245 icing factor U2AF plays an important role in 3' splice site selection, but the division of labor betw
251 ant MDS patient samples demonstrate aberrant 3' splice-site selection associated with increased nonse
253 ence that SF2/ASF and hnRNPA1 play a role in 3'-splice site selection involving the use of a non-cano
257 with the widespread occurrence of potential 3' splice site sequences in the introns of cellular gene
259 uire the snRNP-binding sites or a downstream 3' splice site, SR proteins were sufficient to stimulate
263 lso seen: Effective enhancers, silencers and 3' splice sites tend to be single stranded, and effectiv
266 onverts a GG to an AG, generates a consensus 3' splice site that shifts the reading frame, and create
267 plicing in germline cells occurs at proximal 3' splice sites that lack a preceding polypyrimidine tra
270 er, changing a single nucleotide in the MVMi 3' splice site to that found in the fibrotropic strain M
271 eneracy of the genetic code allows competing 3' splice sites to be eliminated from coding regions, an
277 ivate the ESE and are required for efficient 3' splice site usage and binding of the U1 snRNP to the
279 itively influence utilization of an upstream 3' splice site via exon definition in both trans- and ci
280 plice sites, the proximity to the downstream 3' splice site was more influential in dictating splice
281 addition, in mutant RNA substrates, the new 3' splice site was preferentially recognized compared wi
282 etics of splicing in vitro demonstrated that 3' splice sites were chosen competitively during the sec
284 esistance gene (Neo), a poly(A) site, but no 3' splice site] were typically expressed following inser
286 stance between their lariat branch point and 3' splice site, which is necessary and sufficient for th
287 with one 5' splice site and two alternative 3' splice sites, which produce E6(*)I and E6(*)II, respe
288 e of S34F caused a shift in cross-linking at 3' splice sites, which was significantly associated with
289 expression and RNA splicing at the proximal 3' splice site while increasing use of the distal 3' spl
290 rgeting polypyrimidine (Py) tracts preceding 3' splice sites while adapting to both cytidine and urid
291 d cellular IRESs, we found that four contain 3' splice sites whose activity was required for apparent
292 osal that the human large subunit recognizes 3' splice sites with extensive polypyrimidine tracts ind
293 f the BPS, PPT, and AG dinucleotide found at 3' splice sites, with endogenous proteins assembled alon
295 Two of the mutations activated cryptic 5' or 3' splice sites within exonic regions; the third mutatio
296 experiments, we found a number of functional 3' splice sites within many different transcribed SVAs a
299 he second step, when the 5' exon attacks the 3' splice site, yielding mRNA and lariat-intron products
300 nucleotide), where both NAGs can function as 3' splice sites, yielding isoforms that differ by inclus