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1 ADAR (adenosine deaminase that acts on RNA) editing enzy
2 ADAR edits also non-coding sequences of target RNAs, suc
3 ADAR gene expression and copy number variation were meas
4 ADAR mRNA was significantly overexpressed in the tumor t
5 ADAR overexpression and amplification were significantly
6 ADAR proteins alter gene expression both by catalyzing a
7 ADAR RNA editing enzymes are high-affinity dsRNA-binding
8 ADARs act on RNA that is largely double-stranded and con
9 ADARs are adenosine deaminases responsible for RNA editi
10 ADARs are adenosine deaminases responsible for RNA-editi
11 ADARs are adenosine deaminases that act on RNA and are r
12 ADARs are also important in the development of directed
13 ADARs are also interesting in regard to the remarkable d
14 ADARs are essential for normal mammalian development, an
15 ADARs are essential in mammals and are particularly impo
16 ADARs are modular enzymes with multiple double-stranded
17 ADARs are RNA editing enzymes that target double-strande
18 ADARs capable of editing biologically relevant RNA subst
19 ADARs have also been shown to affect RNA interference (R
20 ADARs interact with Dicer to augment the processing of p
24 indicate that a tight binding ligand for an ADAR can be generated by incorporation of 8-azanebularin
32 carried out by a cellular activity known as ADAR (adenosine deaminase), which acts on RNA substrates
33 show that mutations in ADAR1 (also known as ADAR) cause the autoimmune disorder Aicardi-Goutieres sy
38 investigations into the relationship between ADAR levels, target transcripts, and complex behaviors.
39 ere we uncover an unanticipated link between ADARs (ADAR1 and ADAR2) and the expression of target gen
43 o-inosine (A-to-I) RNA editing, catalysed by ADAR enzymes conserved in metazoans, plays an important
44 denosine to inosine RNA editing catalyzed by ADAR enzymes is common in humans, and altered editing is
45 o-inosine (A-to-I) RNA editing, catalyzed by ADAR enzymes, is a ubiquitous mechanism that generates t
47 sine-to-inosine (A-to-I) editing of dsRNA by ADAR proteins is a pervasive epitranscriptome feature.
48 The specificity and extent of RNA editing by ADAR enzymes is determined largely by local primary sequ
49 uide RNA strands for directed DNA editing by ADAR were used to target six different 2-deoxyadenosines
50 rid substrates are deaminated efficiently by ADAR deaminase domains at dA-C mismatches and with E to
53 d post-transcriptional mechanism mediated by ADAR enzymes that diversifies the transcriptome by alter
56 ptional alteration of double-stranded RNA by ADAR deaminases that is crucial for homeostasis and deve
57 of endo-siRNAs was significantly affected by ADARs, and many altered 26G loci had intronic reads and
62 nally, we propose a model whereby editing by ADARs results in downregulation of gene expression via S
63 t editing of a microRNA (miRNA) precursor by ADARs can modulate the target specificity of the mature
65 te that its expression could be repressed by ADARs beyond their RNA editing and double-stranded RNA (
66 nd endogenous viral elements are silenced by ADARs [adenosine deaminases acting on double-stranded RN
68 editing in noncoding regions was a conserved ADAR function, we applied our method to poly(A)+ RNA of
70 sines by dsRNA-specific adenosine deaminase (ADAR) can lead to the nuclear retention of edited transc
73 to-I editing has not been precisely defined, ADARs have been shown to act before splicing, suggesting
75 DAR reaction will advance efforts to develop ADAR inhibitors and new tools for directed RNA editing.
77 denosines are minimally affected by dramatic ADAR reduction, whereas editing of others is severely cu
78 Here we show that RNA editing by Drosophila ADAR modulates the expression of three co-transcribed mi
79 In this report, we establish that Drosophila ADAR (adenosine deaminase acting on RNA) forms a dimer o
81 ing by adenosine deaminases acting on dsRNA (ADAR) has become of increasing medical relevance, partic
83 inases acting on double-stranded RNA(dsRNA) (ADAR), occurs predominantly in the 3' untranslated regio
84 nderstanding of substrate recognition during ADAR-catalyzed RNA editing and are important for structu
87 ing per se and that even genomically encoded ADARs that are catalytically inactive may have such func
89 roach we call RESTORE (recruiting endogenous ADAR to specific transcripts for oligonucleotide-mediate
92 e catalytic domain of the RNA editing enzyme ADAR to an antisense guide RNA, specific adenosines can
93 d RNA-binding protein and RNA-editing enzyme ADAR was found to bind to oriPtLs, likely facilitating e
94 BP fused to a Drosophila RNA editing enzyme (ADAR) to globally map the mRNA targets of the RBP MSI2 i
102 e findings unravel a new regulatory role for ADAR and raise the possibility that ADAR mediates the di
103 ribonucleoside in RNA is not a substrate for ADAR, in contrast to adenosine deaminase (ADA), which ca
105 tation hot spots were confirmed in 15 genes; ADAR, DCAF12L2, GLT1D1, ITGA7, MAP1B, MRGPRX4, PSRC1, RA
106 is important, the underlying rules governing ADAR substrate recognition are not well understood.
107 systematically engineered adRNAs to harness ADARs, and comprehensively evaluated the specificity and
109 SH to map RNA substrates recognized by human ADARs and uncover features that determine their binding
110 igonucleotides that recruit endogenous human ADARs to edit endogenous transcripts in a simple and pro
111 te of SDRE was compared with those for human ADARs on various substrates and found to be within an or
116 40% of patients showed amplification in ADAR gene and there was a positive correlation between A
117 s of mutant mice and Drosophila deficient in ADAR activities provide further evidence that pre-mRNA e
122 ity to infer RNA editing patterns, including ADAR editing, and inclusion of Guttman scale patterns fo
130 iver or spleen after oral infection of mice, ADAR, PKR, Mx, and CIITA expression levels were elevated
131 te the feasibility of structurally mimicking ADAR substrates as a method to regulate protein expressi
132 rminus (amino acids 1-46) yields a monomeric ADAR that retains the ability to bind dsRNA but is inact
141 ed cis elements associated with a cluster of ADAR modification sites within the endogenous Drosophila
142 ased results show importance of diversity of ADAR isoforms, key RNA editing enzymes linked with the i
143 at amplification leads to over expression of ADAR and it could be used as a prognostic biomarker for
144 editing of METTL7A is merely a footprint of ADAR binding, and there are a subset of target genes tha
145 ies have identified key in vivo functions of ADAR enzymes, informing our understanding of the biologi
146 ts ADAR function since the edited isoform of ADAR is less active in vitro and in vivo than the genome
148 and selective editing and that the level of ADAR expression can play an important role: overexpressi
153 e first evidence that neuronal phenotypes of ADAR mutants can be caused by altered gene expression.
155 work-wide temporal and spatial regulation of ADAR activity can tune the complex system of RNA-editing
158 led by an unexpected dichotomous response of ADAR target transcripts, i.e. certain adenosines are min
159 measles virus, although the precise role of ADAR during measles virus infection remains unknown.
160 gs offer insights into the potential role of ADAR editing dysregulation in the disease mechanisms, in
162 sis approach which allows rapid screening of ADAR variants in single yeast cells and provides quantit
167 eciated and this gene regulatory function of ADARs is most likely to be of high biological importance
170 rough controlled subcellular localization of ADARs, which in turn is governed by the coordinated loca
172 an play an important role: overexpression of ADARs inhibits HDV RNA replication and compromises virus
178 microRNAs had altered levels in at least one ADAR mutant strain, and miRNAs with significantly altere
184 ng enzyme adenosine deaminase acting on RNA (ADAR) 2, as deduced from analysis of ADAR2 self-editing.
185 rgets of adenosine deaminases acting on RNA (ADAR) and validation by means of capillary sequencing.
186 ession of adenosine deaminase acting on RNA (ADAR) contribute to cis- and trans-regulatory mechanisms
189 ing by adenosine deaminases that act on RNA (ADAR) enzymes was quantified over time using RNA-seq dat
190 ting via adenosine deaminases acting on RNA (ADAR) enzymes with associated ADAR guide RNAs (adRNAs).
191 diting by adenosine deaminase acting on RNA (ADAR) enzymes, but the functional significance of this a
193 er of the adenosine deaminase acting on RNA (ADAR) family, is competing with ADR-2 for binding to spe
194 not have adenosine deaminase acting on RNA (ADAR) orthologs and are believed to lack A-to-I RNA edit
195 er of the Adenosine Deaminase Acting on RNA (ADAR) protein family, whose active members catalyze A-to
196 9CT) and adenosine deaminases acting on RNA (ADAR)(rs1127309TC) genes were analyzed by real-time PCR.
197 Staufen, adenosine deaminase acting on RNA (ADAR), and spermatid perinuclear RNA binding protein (SP
198 ted by adenosine deaminases that act on RNA (ADAR), we quantified expression of ADAR1 transcripts in
205 A editase adenosine deaminase acting on RNA (ADAR)1 gene, occurs in 30-50% of MM patients and portend
220 The adenosine deaminases that act on RNA (ADARs) catalyze the site-specific conversion of adenosin
222 The adenosine deaminases acting on RNA (ADARs) comprise a family of RNA editing enzymes that sel
224 ammalian adenosine deaminases acting on RNA (ADARs) constitute a family of sequence-related proteins
230 iting by adenosine deaminases acting on RNA (ADARs) provides an additional mechanism for introducing
231 s that adenosine deaminases that act on RNA (ADARs) require a cofactor, we show that IP6 is required
232 ng) by adenosine deaminases that act on RNA (ADARs), where up to 50% of adenosine (A) residues are ch
233 ing by adenosine deaminases that act on RNA (ADARs), where up to 50% of adenosine residues may be con
234 ng) by adenosine deaminases that act on RNA (ADARs), whereby up to 50-60% of adenosine residues are c
240 ne deaminases acting on double-stranded RNA (ADARs) catalyze the deamination of adenosine (A) to prod
243 relation was found between VDR rs1544410CT, ADAR rs1127309TC, OASL rs1169279CT polymorphisms and tre
244 tion to ADAR1, mammalian cells have a second ADAR, named ADAR2; the deamination specificity of this e
247 ing enzyme adenosine deaminase RNA specific (ADAR), the RNase DICER1, and the dsRNA-activated kinase
249 plexes between differentially epitope-tagged ADAR monomers by sequential affinity chromatography and
251 es of cancer transcriptomes demonstrate that ADAR (adenosine deaminase, RNA-specific)-mediated RNA ed
253 Moreover, we unexpectedly discovered that ADAR proteins bind dsRNA substrates tandemly in vivo, ea
254 bind and edit its substrate, indicating that ADAR dimers require two subunits with functional dsRBDs
255 role for ADAR and raise the possibility that ADAR mediates the differential expression characteristic
261 n at C6 of adenosine in RNA catalyzed by the ADAR enzymes generates inosine at the corresponding posi
263 structures that lead to hyperediting by the ADAR enzymes, and at least 333 human genes contain such
266 The activation of retrotransposons in the ADAR- and ERI-6/7/MOV10-defective mutant is associated w
269 tudies provide a deeper understanding of the ADAR catalytic domain-RNA interaction and new tools for
271 expression and copy number variation of the ADAR gene in advanced GC and clarify its correlation wit
274 erstanding of the molecular mechanism of the ADAR reaction will advance efforts to develop ADAR inhib
275 derstanding of the chemical mechanism of the ADAR-catalyzed adenosine deamination in RNA is lagging.
278 o palindromic repeats are independent of the ADARs and ERI-6/7, and are in fact increased in adar- an
285 amined the role of A-to-I RNA editing by two ADARs, ADAR1 and ADAR2, in the sensing of self-RNA in th
287 mental verification of 16 previously unknown ADAR target genes in the fruit fly Drosophila and one in
289 trate that ADAR2, a member of the vertebrate ADAR family, is concentrated in the nucleolus, a subnucl
291 ptic and autistic conditions, and vertebrate ADARs may have a relevant evolutionarily conserved contr
293 ese tumor-intrinsic responses, with in vitro ADAR dependency varying by tumor type (range 11-80%).
294 ropose a model for ADAR dimerization whereby ADAR monomers first contact dsRNA; however, it is only w
295 ificity, and aid in efforts to predict which ADAR deaminates a given editing site adenosine in vivo.
298 ting activity does not always correlate with ADAR expression levels, suggesting posttranscriptional o
299 dominance of long-range interactions within ADAR substrates and analyze differences between ADAR1 an
300 rmation about how secondary structure within ADAR substrates dictates selectivity, and suggests a rat