ライフサイエンスコーパス: ChIP sequencing

1 A sequencing) with genome-wide CHD8 binding (ChIP sequencing).

2 gonucleotide content of a large sample (e.g. ChIP-sequencing).

3 ared occupancy of -15% of p53-bound genes in ChIP sequencing.

4 tained by merging results from ChIP-chip and ChIP-sequencing.

5 o far unknown DNA regions identified through ChIP-sequencing.

6 l by quantitative interaction proteomics and ChIP-sequencing.

7 munication during the mitochondrial UPR, via ChIP-sequencing.

8 e genome, which we show is now possible with ChIP-sequencing.

9 Additionally, analysis of DVL1 ChIP-sequencing allowed us to map genome-wide binding si

10 ChIP sequencing analyses displayed enrichment of ZBED6 b

11 hairpin RNA-mediated gene silencing, RNA and ChIP sequencing analyses, and metabolite profiling, we s

12 its normal down-regulating cues, and NFATc1 ChIP-sequencing analyses reveal a marked enrichment of N

13 of approaches, including RNA-sequencing and ChIP-sequencing analyses, immunohistochemistry-based tis

14 n cultures, combined with transcriptomic and ChIP-sequencing analyses, we established that RUNX2 driv

15 mmunoprecipitation-microchip (ChIP-chip) and ChIP-sequencing analyses.

16 Here, we performed SOX9 ChIP sequencing analysis and transcriptome profiling of

17 ing unbiased histone proteomics analysis and ChIP sequencing analysis of PDGFRalpha+ OPCs sorted from

18 ChIP sequencing analysis revealed a novel GR binding sit

19 Genome-wide chromatin immunoprecipitation (ChIP) sequencing analysis identified Il2ra and Cd27 as d

20 Indeed, ChIP-sequencing analysis confirmed an increase in the H3

21 In this report, ChIP-sequencing analysis in mouse preosteoblasts reveale

22 ChIP-sequencing analysis reveals p53 dissociates from pr

23 In this report, we used ChIP-sequencing analysis to confirm the presence of thes

24 Vdr gene locus in kidney and intestine using ChIP-sequencing analysis, revealing that only one of the

25 t are prevalently observed in assays such as ChIP Sequencing and bisulfite sequencing.

26 mosomal localization mapping of Brachyury by ChIP sequencing and ChIP-exonuclease revealed distinct s

27 ok a comprehensive epigenetic approach using ChIP sequencing and ChromHMM computational analysis to d

28 Here, we used genome-wide ChIP sequencing and found that the DNA-bound form of cyc

29 lar biology realm remain unanswered, we used ChIP sequencing and loss-of-function strategies to defin

30 Using ChIP sequencing and RNA sequencing analysis, we determin

31 ed the genome-wide association of Lem2 using ChIP sequencing and we found that it binds to the centra

32 a (NFKBIB) by chromatin immunoprecipitation (ChIP) sequencing and ChIP assays, which was accompanied

33 Through chromatin immunoprecipitation (ChIP) sequencing and microarray experiments, we further

34 ed integrated chromatin immunoprecipitation (ChIP)-sequencing and RNA-sequencing analysis to identify

35 D-seq), DNMT1 chromatin immunoprecipitation (ChIP)-sequencing and RNA-sequencing analysis, we identif

36 me-wide binding of Tbrain orthologs by using ChIP-sequencing and associates these orthologs with puta

37 cription factor (TF) binding events from 187 ChIP-sequencing and ChIP-on-chip datasets in murine and

38 As assessed by ChIP-sequencing and RNA-sequencing analyses, we found th

39 followed by high-throughput DNA sequencing (ChIP-sequencing), and H3K27ac-HiChIP revealed a specific

40 A-sequencing, chromatin immunoprecipitation (ChIP) sequencing, and assessment of the inflammasome fun

41 ad increased binding to certain DNA sites in ChIP-sequencing, and Mtb containing this variant showed

42 egard to enhancer structure and contemporary ChIP-sequencing assays, whereby just a small fraction of

43 We use ChIP sequencing (ChIP-seq) and RNA sequencing (RNA-seq)

44 We used ChIP sequencing (ChIP-seq) to identify around 16,000 E2F

45 Here we use ChIP sequencing (ChIP-seq) to identify domains enriched

46 newly performed genomic data sets, including ChIP sequencing (ChIP-seq), genome-wide mRNA profiling,

47 Using ChIP sequencing (ChIP-seq), we compared the ERalpha prof

48 Our chromatin immunoprecipitation (ChIP) sequencing (ChIP-seq) analysis confirmed binding o

49 in vivo, and chromatin immunoprecipitation (ChIP) sequencing (ChIP-seq) approaches to demonstrate th

50 tion with the chromatin immunoprecipitation (ChIP) sequencing (ChIP-Seq) data shows that the domain b

51 ipitation (ChIP)-quantitative PCR (qPCR) and ChIP-sequencing (ChIP-seq) analyses indicated that Ikaro

52 Here, we used ChIP-sequencing (ChIP-seq) and RNA sequencing (RNA-seq)

53 Single-gene ChIP and genome-wide ChIP-sequencing (ChIP-seq) and RNA-seq studies extended

54 Using a tamoxifen-inducible time-course ChIP-sequencing (ChIP-seq) approach, we show that the ub

55 ChIP-sequencing (ChIP-Seq) data on other transcription f

56 Integration of a ChIP-sequencing (ChIP-Seq) data set for 10 key stem cell

57 f DNA-associated proteins by methods such as ChIP-sequencing (ChIP-seq)(,) or CUT&RUN.

58 s is detected by ChIP-on-chip (ChIP-chip) or ChIP-sequencing (ChIP-seq).

59 ssessed using chromatin immunoprecipitation (ChIP) sequencing, ChIP-quantitative polymerase chain rea

60 ng chromatin immunoprecipitations (ChIP) and ChIP sequencing (ChIPSeq) of fetal pancreas and islet ch

61 ChIP sequencing confirmed that stress-induced redistribu

62 are available under subseries GSE81576; and ChIP sequencing data are available under subseries GSE81

63 lected 108 transcription-related factor (TF) ChIP sequencing data sets in ten murine cell types and c

64 tware enables users to explore bisulfite and ChIP sequencing data sets-and in the process obtain publ

65 Using ChIP-sequencing data and cell fractionation, we have com

66 arning algorithm able to jointly combine TFs ChIP-Sequencing data and gene expression compendia to re

67 ChIP-sequencing data from longitudinal GBM tumors sugges

68 Analysis using ENCODE ChIP-sequencing data identified CTCF as the common trans

69 For one gene, MuRF1, ChIP-sequencing data identified the location of Bcl-3 an

70 Analysis of our ChIP-sequencing data revealed that SNP rs2887571 overlap

71 Analysis of our ChIP-sequencing data revealed that SNP rs2887571 overlap

72 , comparison with three other published EBF1 ChIP-sequencing data sets in B-cells reveals both gene-

73 l for efficiently analyzing large amounts of ChIP-sequencing data to study dynamic changes of gene re

74 By means of bioinformatics analysis of ChIP-sequencing data we found Bcl-3 to be directing tran

75 Using ENCODE LCL transcription factor ChIP-sequencing data, EBNA3C sites coincided (+/-250 bp)

76 sequences, and was validated with ChIP-seq (ChIP sequencing) data.

77 ected eleven pairs (H3K4me3 and H3K27me3) of ChIP sequencing datasets in human ES cells and eight pai

78 onent analysis (dPCA) for analyzing multiple ChIP-sequencing datasets to identify differential protei

79 nd, in predicting motifs in 690 human ENCODE ChIP-sequencing datasets.

80 mass spectrometry, X-ray crystallography and ChIP sequencing demonstrate that PHF13 binds chromatin i

81 ChIP-sequencing demonstrated that AP-1 factor binding is

82 nd Delta exons 9-14, as well as from a PRDM5 ChIP-sequencing experiment.

83 polymerase II chromatin immunoprecipitation (ChIP)-sequencing experiments from 35 different murine an

84 we conducted chromatin immunoprecipitation (ChIP)-sequencing experiments in lymphoid cells treated w

85 Moreover, ChIP-Sequencing experiments identified Ada2b peaks that

86 Gene expression and ChIP-Sequencing experiments show that high levels of Myc

87 ChIP-sequencing experiments using an anti-O-GlcNAc antib

88 P, bZIP, EGR, E-Box and NF-kappaB motifs, by ChIP sequencing for a subset of motif corresponding tran

89 Metabolomics and ChIP sequencing for acetylated modification on lysine 27

90 We employed ChIP-sequencing for H3K4me3 to examine effects of early

91 Integration of RNA-sequencing and ChIP-sequencing further revealed ETS1 as a transcription

92 gy we applied chromatin immunoprecipitation (ChIP)-sequencing, gene expression profiling, and rapid i

93 xpression, and we use ChIP, validated by p63-Chip sequencing genomewide profiling analysis, and lucif

94 ormatics analysis of available ChIP-chip and ChIP-sequencing genomic data from yeast, we investigated

95 EBNA3C ChIP-sequencing identified >13,000 EBNA3C sites in LCL D

96 In this work, using ChIP-sequencing, immunoblotting, quantitative PCR, and c

97 Analyzing beta-catenin ChIP sequencing in human cells, we found the 11-bp NREs

98 RNA-sequencing of Nkx2-1 mutants and NKX2-1 ChIP-sequencing in mouse embryos, we delineate the NKX2-

99 ChIP-sequencing in preadipocytes identifies over 300 IRX

100 ential role of GATA3, we performed extensive ChIP-sequencing in unstimulated breast cancer cells and

101 ChIP-sequencing indicates significant overlap of the TAF

102 Here we use ChIP-sequencing, integrated with microarray analysis, to

103 m of SD70 that permits its application for a ChIP-sequencing-like approach, referred to as "Chem-seq,

104 decreased Atf5 transcript, and primary islet ChIP-sequencing localized PDX1 to the Atf5 promoter, imp

105 These datasets, along with paired H3K27ac ChIP-sequencing maps, validate CIC::DUX4 as a neomorphic

106 ChIP sequencing of GR showed that corticosterone treatme

107 ChIP sequencing of the major players NUT, ZNF532, BRD4,

108 ChIP sequencing of TNFalpha-stimulated H9c2 cells reveal

109 Using antibody-independent ChIP-sequencing of REVERBalpha in mouse liver, we reveal

110 At odds with this model, ChIP-sequencing of TBP and Pol II subunit Rpb1 revealed

111 atin immunoprecipitation (ChIP) analysis and ChIP-sequencing of TP63 binding in differentiated kerati

112 Centromere locations were determined by ChIP-sequencing of two key centromere proteins, Cse4 and

113 NFIC binding sites are enriched in NR5A2 ChIP-Sequencing peaks.

114 Using high-resolution ChIP-sequencing, promoter capture Hi-C, and RNA-sequenci

115 ChIP-sequencing provides the first molecular explanation

116 equencing time over any previously published chip sequencing result, with comparable read length and

117 cted by loss of EBF1 in adipocytes, although ChIP-sequencing results suggest that these actions are i

118 Finally, we have combined the ChIP-sequencing results with gene expression microarray

119 Chromatin immunoprecipitation (ChIP) sequencing revealed that, although Stag2 and Stag1

120 ChIP-sequencing revealed that by 24 h after expression,

121 ChIP-sequencing revealed that PAI-1 can bind DNA at dist

122 The matched ChIP-sequencing (seq) and RNA-seq datasets created for t

123 ChIP-sequencing showed PGC-1alpha localization peaks in

124 ChIP-sequencing shows overlapping and distinct binding p

125 ChIP-sequencing shows that YY1 predominantly binds to pr

126 We present a newly developed ChIP-sequencing simulation algorithm implemented in the

127 ch the sans-spike-in method for quantitative ChIP-sequencing (siQ-ChIP).

128 ne proteomic, transcriptomic, lipidomic, and ChIP-sequencing studies combined with CRISPR knockout an

129 Genome-wide ChIP-sequencing studies indicate that TAF7L binds to pro

130 We used ChIP sequencing to define genomewide TEAD4 target genes

131 Here, we used ChIP sequencing to identify direct targets of FOXO.

132 Using ChIP sequencing to map sites of GRHL2 binding in the bas

133 rmined cellular MYC levels and used RNA- and ChIP-sequencing to correlate promoter occupancy with gen

134 ChIP sequencing was performed on pro-B cells, revealing

135 Using ChIP-sequencing we found that Bcl-3, an NF-kB transcript

136 EMSA) or genome-wide assays (RNA-sequencing, ChIP-sequencing), we have assembled a comprehensive regu

137 Using shotgun proteomics and ChIP sequencing, we demonstrate that leukodystrophy-caus

138 existing p53 chromatin immunoprecipitation (ChIP) sequencing, we identified a large repertoire of ti

139 By combining ChIP sequencing with microarray-based gene profiling, we