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1 ges in a DNA molecule with the sequence of a CpG island.
2 methylation of the truncated DLGAP4 promoter CpG island.
3 inks between circRNA biogenesis and flanking CpG island.
4 ver gene regions and location in relation to CpG islands.
5 aling pathway and lateralized methylation of CpG islands.
6 ulated by SOX2 and EZH2, which colocalize at CpG islands.
7 of the well-understood methylation-switch at CpG islands.
8 role for TDG in shaping 5fC distribution at CpG islands.
9 h the exception of genes that do not contain CpG islands.
10 rase II-enriched regions, and hypomethylated CpG islands.
11 iate the demethylation of DNA within genomic CpG islands.
12 pG rich while H3K27me3-only promoters lacked CpG islands.
13 rt of a mechanism that blocks methylation of CpG islands.
14 ications for polycomb-mediated repression at CpG islands.
15 c genes repressed by FGF19, have overlapping CpG islands.
16 nd generates paradoxical hypermethylation of CpG islands.
17 e and thus the transcriptional competence of CpG islands.
18 lated changes in DNA methylation at specific CpG islands.
19 moters, regardless of their association with CpG islands.
20 me methylation occurred in sequences outside CpG islands.
21 eases with age, corresponding with a loss of CpG islands.
22 aling pathway, and widespread methylation of CpG islands.
23 K27me3 domains, but retention of H3K27me3 at CpG islands.
24 equent acquisition of new DNA methylation in CpG islands.
25 compared with controls and were enriched for CpG islands.
26 methylation occurring preferentially outside CpG islands.
27 IC array targeting 866,562 methylation site (CpG) islands.
28 we demonstrated that hypermethylation of the CpG-island 5'of the G(4)C(2)-repeat is expansion-specifi
29 was associated with hypermethylation of the CpG-island (5'of the repeat) in DNA samples obtained fro
30 over-represented in CpG islands, comparative CpG island analysis using conventional sequence analysis
32 ncing revealed that miR-210 is embedded in a CpG island and miR-210 gene has 2 CpG sites with lower m
33 induced obese (DIO) mice, methylation of the CpG island and the binding of methyl-CpG-binding domain
34 d by overwhelming age-related methylation in CpG islands and demethylation at shore/shelf and open se
37 he MBD4MBD4 targets the intact protein to (m)CpG islands and promotes scanning by rapidly exchanging
38 ation and a CxxC zinc-finger that recognizes CpG islands and recruits the polycomb repressive complex
39 from the meta-analysis were enriched in non-CpG islands and shores ([Formula: see text]) and deplete
45 osed method on eight independent assays (two CpG islands and six imprinting DMRs) and demonstrated it
47 h recombination hot spots, are enriched near CpG islands and transcription start sites (P<2.2 x 10(-1
48 to normal plasma cells, were located outside CpG islands and were unexpectedly associated with intron
49 d in hypomethylation of positions outside of CpG islands and within intragenic (exon) regions of the
51 ers 96% of known cytosine-phosphate-guanine (CpG) islands and 485,000 CpG, and transcriptome profilin
52 d at transcription start sites (TSSs) and in CpG islands, and depleted in transcriptional enhancers.
53 proteins are crucial for PRC2 recruitment to CpG islands, and further clarifies the roles of these pr
54 ctivity, induces complete methylation of P16 CpG islands, and inactivates P16 transcription in the HE
56 hes revealed that the majority of methylated CpG islands are intragenic and gene bodies are hypermeth
62 tors revealed significant hypomethylation of CpG islands associated with the promoters of genes invol
63 Together these discoveries demonstrate that CpG-island associated gene promoters can prime genes for
70 oters are primed for activation by FBXL19, a CpG island binding protein, through its capacity to recr
74 ed to individual regulatory elements such as CpG islands, but can extend across entire chromosomal do
76 stigated the methylation profile of the same CpG-island by bisulfite sequencing of DNA obtained from
77 sequence bias, such as those often found in CpG islands, can obscure the enrichment of biologically
78 nes lack a conventional TATA box but contain CpG islands, cCpG-I and cCpG-II for Cosmc and tCpG for T
79 w that the degrees of overall methylation in CpG island (CGI) and demethylation in intergenic regions
82 ometabolite d-2-hydroxyglutarate (2HG) and a CpG island (CGI) hypermethylation phenotype (G-CIMP).
83 nscription is initiated by a distal upstream CpG island (CGI) located several kilobases away that fun
84 ere we report a novel method for genome-wide CpG island (CGI) methylation sequencing for single cells
85 alysis revealed hypermethylation at a distal CpG island (CGI) near the HLA-E gene in NIKS-16 cells co
86 which can analyse jointly all CpGs within a CpG island (CGI) or a Differentially Methylated Region (
87 t GC skew is prevalent at thousands of human CpG island (CGI) promoters and transcription termination
88 revealed that de novo DNA methylation of non-CpG island (CGI) promoters was more often associated wit
89 shed this phasing primarily at enhancers and CpG island (CGI) promoters, with little effect on insula
90 ically distinct subsets, which correspond to CpG island (CGI) proximal or distal regions, respectivel
91 found that 5hmC is significantly enriched in CpG island (CGI) shores while depleted in CGIs themselve
93 e analyzed 85,134 CpG sites [28,114 sites in CpG islands (CGI) and 57,020 in non-CpG islands (NCGI)].
95 but not directly shown, to protect promoter CpG islands (CGIs) against abnormal DNA methylation (DNA
96 ay occur in vivo for DNA methylation outside CpG islands (CGIs) and could facilitate localization of
101 at postnatal DNA methylation increases at 3' CpG islands (CGIs) correlate with transcriptional activa
103 we identify hundreds of genes and associated CpG islands (CGIs) for which the nearby presence of a so
104 DNA hypermethylation of promoter-associated CpG islands (CGIs) in cancer, hypermethylated sites in M
105 ell as increased methylation in the promoter CpG islands (CGIs) of a number of cell cycle related gen
106 methylation fidelity is lost at a number of CpG islands (CGIs) resulting in CGI hypermethylation at
109 , a DNA-binding module that often recognizes CpG islands (CGIs) where TET1 predominantly occupies.
110 stance, co-localization with coding regions, CpG islands (CGIs), and regulatory elements from the ENC
111 ion in the germline, especially at imprinted CpG islands (CGIs), is crucial to embryogenesis in mamma
112 half of human promoters are associated with CpG islands (CGIs), relatively CpG-rich stretches of gen
115 to CpG sites outside of genes, promoters and CpG islands (CGIs), while trans-meQTLs are over-represen
120 as CpG dinucleotides are over-represented in CpG islands, comparative CpG island analysis using conve
121 protein, promotes H2Bub1 at the promoters of CpG island-containing genes by interacting with Rnf20.
122 equired for efficient recruitment of PRC2 to CpG island-containing promoters in mouse embryonic stem
123 eils the preferential occupancy of Fbxl19 on CpG island-containing promoters, and we further discover
130 terestingly, the human EpCAM gene also has a CpG island downstream from its TSS, and a NF-kappaB-bind
132 demonstrated that a 1.5 kb methylation-free CpG island from the human HNRPA2B1-CBX3 housekeeping gen
133 ions and methylation at loci concentrated in CpG islands genome wide in 95 nuclear pedigrees, using D
136 regions show enhanced de novo activity, and CpG islands have both poor maintenance and de novo activ
137 pigenetic repression occurs concomitant with CpG island hypermethylation and loss of nucleosomes at p
138 t EBV infection of oral keratinocytes led to CpG island hypermethylation as an epigenetic scar of pri
139 wide patterns of aberrant hypomethylation or CpG island hypermethylation in specific cancer types.
140 thesized that LTF expression is silenced via CpG island hypermethylation in the early stages of prost
141 Ls with DNMT3A(R882), while DNMT3A-dependent CpG island hypermethylation is a consequence of AML prog
143 to EBV compared to uninfected controls, with CpG island hypermethylation observed at several cellular
146 lly all AMLs with wild-type DNMT3A displayed CpG island hypermethylation, this change was not associa
147 Here we demonstrate the presence of promoter CpG island hypermethylation-linked inactivation of DERL3
151 rum of methylated genomic DNA from the AGTR1 CpG island in metastatic melanoma implying that AGTR1 en
152 ing the changes in methylation patterns in a CpG island in the first exon of the promoter during lung
158 defined as DNA hypermethylation at specific CpG islands in subsets of tumors, show high concordance
161 ultiple SPRY3 transcripts originating at two CpG islands in the X-linked F8A3-TMLHE region, suggestin
162 ding pTreg displayed hypermethylation of the CpG islands in Treg-specific demethylated region, CTLA-4
163 Methylation-induced silencing of promoter CpG islands in tumor suppressor genes plays an important
164 high-level methylation in discrete promoter CpG islands, in a pattern clearly distinct from other lu
165 2235312 polymorphisms and methylation of the CpG island influence the expression of apelin in HAPE.
169 Likewise, the frequency at which the LTF CpG island is methylated across samples suggests it is a
173 f the variant PCGF1/PRC1 complex by KDM2B to CpG islands is required for normal polycomb domain forma
174 sults demonstrate that Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiq
178 of c9ALS cases show hypermethylation of the CpG island located at the 5' end of the repeat expansion
179 ing cells, and examined DNA methylation of a CpG island located downstream from SALL4 transcriptional
180 pigenetic changes such as DNA methylation of CpG islands located in the promoter region of some tumor
182 we provide evidence that methylation beyond CpG islands may be related to regulation of gene express
183 f age-related changes in promoter-associated CpG islands may contribute to the increased cancer risk
184 ells due to DNA hypermethylation of promoter CpG islands may offer new cancer prevention or therapeut
185 est a role for H3K4me1 in the demarcation of CpG island methylation borders in normal cells, which be
187 published data from a study of differential CpG island methylation in lung cancer and a dataset we g
188 melanomas expressing this receptor and AGTR1 CpG island methylation in serum may serve as a novel bio
189 report decreasing expression and increasing CpG island methylation of AGTR1 in metastatic versus pri
190 ed with the TCGA 'microsatellite instability/CpG island methylation phenotype' transcriptomic subtype
191 sis, which is associated with BRAF mutation, CpG island methylation phenotype, and MLH1 methylation.
192 utations, microsatellite instability status, CpG island methylation status, PTEN loss, EGFR expressio
193 or microsatellite instability, MLH1 promoter CpG island methylation, and KRAS and BRAF mutations in c
194 on differentiation, DNMT activation leads to CpG island methylation, causing loss of repressor protei
197 terized by extensive, abnormal gene-promoter CpG-island methylation, or the methylator phenotype (CIM
198 epigenetic clusters, including a clear cell CpG island methylator phenotype (C-CIMP) subgroup associ
199 ocitrate dehydrogenase 1/2 (IDH1/2) have the CpG island methylator phenotype (CIMP) and significantly
200 ntaining activated BRAF (BRAF[V600E]) have a CpG island methylator phenotype (CIMP) characterized by
201 AS-positive colorectal cancers (CRCs) have a CpG island methylator phenotype (CIMP) characterized by
204 dification recapitulated the hypermethylated CpG island methylator phenotype (CIMP) observed in EBV-a
207 ellite instability (MSI), genetic mutations, CpG island methylator phenotype (CIMP), and immunostaini
208 rmation on microsatellite instability (MSI), CpG island methylator phenotype (CIMP), and mutations in
209 btypes for microsatellite instability (MSI), CpG island methylator phenotype (CIMP), and somatic muta
210 features: microsatellite instability (MSI), CpG island methylator phenotype (CIMP), B-Raf proto-onco
213 er differences, in a small set of non-glioma CpG island methylator phenotype (non-G-CIMP) primary tum
214 gnificantly enriched for those harboring the CpG island methylator phenotype (p = 0.036, Chi square t
215 pe 1 (microsatellite instability [MSI]-high, CpG island methylator phenotype [CIMP] -positive, positi
216 suppressor genes, such as APC and TP53; (3) CpG island methylator phenotype CRCs in approximately 20
217 y unmethylated CpGs, a characteristic of the CpG island methylator phenotype in cancer, a novel filte
218 tion status, microsatellite instability, and CpG island methylator phenotype were also evaluated.
219 ldtype] or BRAF [BRAF wildtype], no or a low CpG island methylator phenotype, and microsatellite stab
220 AS wildtype, BRAF wildtype, have no or a low CpG island methylator phenotype, and microsatellite stab
221 stics (including microsatellite instability, CpG island methylator phenotype, KRAS, BRAF, and PIK3CA
222 correlated tumor molecular characteristics (CpG island methylator phenotype, microsatellite instabil
223 way expression patterns, the hypermethylated CpG island methylator phenotype-associated (CIMP) RCCs a
229 c pancreatitis (CP) and normal tissues using CpG island microarrays and identified WNK2 as a prominen
234 Aberrant DNA methylation in the promoter CpG island of Wnt inhibitory factor 1 (WIF1) has been ob
236 ted the function of Gadd45b in demethylating CpG islands of representative gene targets, which have b
237 hile early studies were mostly restricted to CpG islands or promoter regions, recent findings indicat
238 that the degree of methylation of the entire CpG-island or contribution of specific CpGs (n = 26) is
239 observed rapid methylation increases at the CpG-island overlapping the first 5'-untranslated region
242 be explained by differential methylation of CpG islands present in the TERRA-expressing murine subte
244 c landscape the FXN gene promoter, a typical CpG island promoter, was found to be in a transcriptiona
246 el filter always selected more features from CpG island promoters and the standard deviation filter a
249 rgently targeted to species-specific sets of CpG island promoters that extend beyond known imprint co
250 ation at hundreds of embryonically protected CpG island promoters, particularly those that are associ
252 is associated with increased methylation of CpG islands proximal to the promoters of these genes; fu
254 umulating evidence supports a model in which CpG islands recruit Polycomb group (PcG) complexes; howe
255 tion status of a miR-494 promoter-associated CpG island region (-186 to -20), which was confirmed by
257 her levels of methylation in gene-regulatory CpG island regions (Deltamethylation = 4.1%, P < 0.0001)
258 The majority of mammalian promoters are CpG islands; regions of high CG density that require pro
259 rtion of RGM proximal to promoter-associated CpG islands reports the gain or loss of DNA methylation.
260 ng abnormal DNA hypermethylation of promoter CpG islands, repressive chromatin modifications and enha
262 b expression due to hyper-methylation in the CpG island shore region of mmu-miR-15b in both the sperm
264 hed in flanking regions of active promoters, CpG island shores, binding sites of the transcription fa
265 ferential methylation was overrepresented in CpG island shores, enriched within gene bodies but not i
267 1500 and TSS200), 1st exons, 5'UTRs, 3'UTRs, CpG islands, shores, shelves, open seas and FANTOM5 enha
268 ion-induced tumors gained DNA methylation at CpG islands, some of which are associated with putative
269 or epigenetically in various cancers, and a CpG island spanning the transcriptional start site of LT
272 bisulfite amplicon sequencing on a range of CpG island targets across a panel of human cell lines an
275 nriched in CG content, which correlates with CpG islands that display a low level of DNA methylation.
276 Using methylome sequencing we identified CpG islands that display partial methylation encroachmen
277 onjunction with hypermethylation of promoter CpG islands that presumably lead to genome instability a
278 validate a set of 67 CpG dinucleotides in 51 CpG islands that undergo age-related methylomic drift.
280 n frequency at transcription start sites and CpG islands, thereby reducing the potential for insertio
281 onjunction with hypermethylation of promoter CpG islands; these changes are often correlated with pro
282 that mutant PPM1D drives hypermethylation of CpG islands throughout the genome and promotes epigeneti
283 d breaks enriched at Ssb-binding regions and CpG islands, together with the accumulation of R-loops a
284 iption start site, chromosome fragile sites, CpG islands, viral sequences and target sequences were i
287 Upon detailed analysis of the TLR2 promoter CpG Island, we noted higher CpG methylation in this dysr
288 whereas unmethylated and nucleosome-depleted CpG islands were enriched for CTCF sites that remained o
290 2 targets NuRD to unmethylated or methylated CpG islands where its distinct dynamic binding modes hel
291 nding site in BCL6 exon1A within a potential CpG island, which is unmethylated both in cell lines and
292 lated regions (DMRs) such as hypermethylated CpG islands, which may account for epigenetic instabilit
294 is unable to spread from large unmethylated CpG islands, while H3K27me2 can be deposited outside the
295 Genbank), which shares the first exon and a CpG island with STL but is transcribed in the opposite d
296 variable methylation of promoter-associated CpG islands with levels ranging from 4% to 35%, even at
298 hains, RNA binding protein binding sites and CpG islands within the flanking regions of the circular
299 In vitro, DF increased DNA methylation of CpG islands within the KLF4 promoter that significantly