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1 subtype-specific gene expression compared to CpG methylation.
2 cleotide variants, structural variations and CpG methylation.
3 gion, and identifies relevant differences in CpG methylation.
4 tudy the strand-specific distribution of non-CpG methylation.
5 r design of sequence-specific antagonists of CpG methylation.
6 ated by the neural master regulator REST and CpG methylation.
7 e analyses of microRNA expression levels and CpG methylation.
8 ided little or no relevant information about CpG methylation.
9 the structure of a nucleosome is affected by CpG methylation.
10 chanisms of gene repression and silencing by CpG methylation.
11 fection on MGMT RNA, protein expression, and CpG methylation.
12 in differential locus-specific propensity of CpG methylation.
13 sferase Dnmt3a/b and an increase in promoter CpG methylation.
14 ase in HP1 and Dnmt3a/b binding and promoter CpG methylation.
15 1) in leukemia cells revealed the absence of CpG methylation.
16 mitochondrial DNA failed to show meaningful CpG methylation.
17 s, while displaying a contrasting pattern to CpG methylation.
18 RE1 sequences is temporally regulated by non-CpG methylation.
19 different spacer lengths, and the effect of CpG methylation.
20 subset of body-methylated genes acquires non-CpG methylation.
21 regulators of cytosine guanine dinucleotide (CpG) methylation.
24 Most of these elements remain protected from CpG methylation, a prevalent epigenetic modification ass
25 on, while somatic copy-number alteration and CpG methylation accounted for 7.3% and 3.3%, respectivel
26 ly, our results demonstrate the stability of CpG methylation across generations, clarify the interpla
27 of the brain; (ii) there was an increase in CpG methylation after neural differentiation that resemb
28 er and in principle it can differentiate any CpG methylation alterations and can be adapted to analyz
29 n of these putative piRNAs, single-base pair CpG methylation analyses across the genome of Mili/piRNA
31 utarate, which is associated with higher DNA CpG methylation and altered histone methylation that acc
32 tudy, we use nanopore sequencing to evaluate CpG methylation and chromatin accessibility simultaneous
35 lencing of Vbeta10 correlated with increased CpG methylation and decreased histone acetylation over t
36 -eMS), identified by integrating genome-wide CpG methylation and gene expression profiles collected e
38 egulatory activity in terms of resistance to CpG methylation and gene silencing in murine P19 embryon
40 chanisms involving histone modifications and CpG methylation and hydroxymethylation as well as by the
42 r S-adenosyl methionine (SAM) did not affect CpG methylation and IEG gene expression at baseline.
46 nsplants, including through an evaluation of CpG methylation and mutation of critical CpG residues.
50 TORC1 signaling during development prevented CpG methylation and silencing of the Dlk1-Dio3 locus, th
51 nd also investigated the correlation between CpG methylation and single nucleotide polymorphisms (SNP
54 at loss of PTEN drives global changes in DNA CpG methylation and transcriptomic gene expression and h
55 , very low changes in the Mat1A:Mat2A ratio, CpG methylation, and histone H4 acetylation occurred.
56 etween epigenetic modifications-in our case, CpG methylation-and educational attainment (EA), a biolo
58 e to non-genetic effects, genetic effects of CpG methylation are shared across tissues and thus limit
59 including histone modifications and promoter CpG methylation, as a component of leukemia progression
60 (PHD(UHRF1)), an important regulator of DNA CpG methylation, as a histone H3 unmodified arginine 2 (
61 We conducted a study to assess differential CpG methylation at 1,500 genic loci during MM progressio
69 on activity was correlated with differential CpG methylation at the heterologous promoter: the promot
70 t dCas9-SunTag-DNMT3A dramatically increases CpG methylation at the HOXA5 locus in human embryonic ki
71 ore the FS challenge resulted in an enhanced CpG methylation at the IEG loci and suppression of IEG i
76 by histone chaperone Nap1 and the effects of CpG methylation based on three-color single molecule FRE
77 Methods for quantifying the imbalance in CpG methylation between alleles genome-wide have been de
80 nuclear cells by >75% and repetitive element CpG methylation by approximately 10%, and increased HbF
83 results suggest a general mechanism by which CpG methylation can modulate protein-DNA interaction str
84 d pronounced differences in both CpG and non-CpG methylation (CG-DMRs and CH-DMRs) only in neuronal c
85 disappeared upon B cell commitment, whereas CpG methylation changed extensively during B cell matura
87 ons in human macrophages are associated with CpG methylation, chromatin compaction, and histone modif
88 ortance of cell type-specific differences in CpG methylation, claiming these are restricted to locali
90 eveloped software, Cluster-Based analysis of CpG methylation (CluBCpG), and explored variation in rea
95 NAm data; expand on the relationship between CpG methylation, CpH methylation, and gene expression; a
97 native start site (39%), MBD-seq genome-wide CpG methylation data were analyzed for methylation alter
98 ons of high sequence complexity, and derived CpG-methylation data from 31 178 Alu elements and their
99 ional neural networks trained on genome-wide CpG-methylation data learned distinct sequence preferenc
100 48% of cases, P = .039), and mean levels of CpG methylation decreased from 12.6% to 5.7% (P = .025),
101 of CBX3 was associated with reduced promoter CpG-methylation, decreased levels of repressive and incr
102 al approaches enabled us to demonstrate that CpG methylation decreases I-CreI DNA binding affinity an
103 We find that at the chromosome level high CpG methylation density is correlated with subtelomeric
104 human cancer, suggesting that AID-mediated, CpG-methylation dependent mutagenesis is a common featur
105 e found that gene-associated neuron vs. glia CpG methylation differences are highly conserved across
109 de-methylation, despite the fact that global CpG methylation drops to 10% in primordial germ cells an
111 cer units within SEs typified by distinctive CpG methylation dynamics in embryonic stem cells (ESCs).
113 d SOCS alignment tool, and was used to align CpG methylation-enriched Arabidopsis thaliana bisulfite
115 cell line revealed a significant decrease in CpG methylation for the DNMT1 knockout and DNMT1, 3B dou
118 tion occurs at CpG sites, and asymmetric non-CpG methylation has only been detected at appreciable le
120 nt excess of quantitative trait loci for DNA CpG methylation, hereafter referred to as methylation qu
121 ent advances in our understanding of altered CpG methylation, hydroxymethylation, and active DNA deme
122 analyses of school-age asthma in relation to CpG methylation (Illumina450K) in blood measured either
126 nome-wide methylation screening, we assessed CpG methylation in a diverse set of 89 primary invasive
129 expressed in T cells increased Ifng promoter CpG methylation in both effector and memory Th2 cells.
131 disease-associated DNA variants regulate cis-CpG methylation in CD4(+) T and/or B cells at 37% RA loc
137 on of MGMT and its epigenetic regulation via CpG methylation in gastric tissue from patients with H p
138 sulfite genomic sequencing method to examine CpG methylation in HCT116 human cells and primary human
140 that display significantly higher levels of CpG methylation in immortalized cell lines as compared t
141 non-CpG sites, we show that the skew of non-CpG methylation in introns is mainly guided by sequence
143 we demonstrate our tool can induce targeted CpG methylation in mice by zygote microinjection, thereb
145 ays to test peripheral blood DNA to quantify CpG methylation in peripheral blood leukocytes at DMRs o
151 only certain body-methylated genes gain non-CpG methylation in the absence of IBM1 and others do not
153 analyses showed a decrease in the degree of CpG methylation in the EcSOD promoter in the 3D versus 2
154 A. fumigatus was associated with changes in CpG methylation in the IFN-gamma and IL-4 promoters that
156 bject to epigenetic regulation, specifically CpG methylation in the promoter region, by determining l
157 Herein, we firstly determined the role of CpG methylation in the regulation of ocular tissue-speci
161 pproach to studying the epigenetic mechanism CpG methylation in tissue samples is to identify regions
162 antly more long interspersed nuclear element CpG methylations in individuals at birth who were later
163 ound predominantly in CpGs but in plants non-CpG methylation (in the CpHpG or CpHpH contexts, where H
166 COR1 and H3K9me3 ChIP-Seq, FAIRE-seq and DNA CpG methylation interactions were related to gene expres
169 l packing unit of the eukaryotic genome, and CpG methylation is an epigenetic modification associated
170 changes in the structure of nucleosomes upon CpG methylation is an essential step toward the understa
172 ransposable elements, we also found that non-CpG methylation is distributed in a strand-specific mann
174 tep epigenetic inhibitory mechanism in which CpG methylation is linked with histone posttranslational
175 H Genotype-Tissue Expression (GTEx) program, CpG methylation is measured by deep whole-genome bisulfi
179 ion maps that revealed a strand-specific non-CpG methylation, its dynamic regulation, and its impact
180 e resolution, we quantitatively compared the CpG methylation landscape of adult mouse dentate granule
181 activity by Casilio-ME1 robustly alters the CpG methylation landscape of promoter regions and activa
183 pting to different correlation structures in CpG methylation levels across the genome while taking in
184 of Nanog and, overall, had decreased genomic CpG methylation levels, which included the promoters of
185 l and nuclear level of MAT1A protein, global CpG methylation, lin-28 homolog B (Caenorhabditis elegan
186 nscriptome, epigenome H3K4me3, H3K27me3, and CpG methylation maps of trophoblast progenitors, purifie
187 ding the functional significance of specific CpG methylation marks in the context of endogenous gene
188 sical properties of nucleosomes induced upon CpG methylation may contribute directly to the formation
189 tics with genetics and sex, and suggest that CpG methylation may serve as an epigenetic record of lif
190 Dnmt3a is the sole 'writer' of atypical non-CpG methylation (mCH), and MeCP2 is the only known 'read
191 a responsiveness is associated with promoter CpG methylation nearby site-alpha and TATA box, reversib
194 as overexpressed and associated with loss of CpG methylation of H3K4me1-associated enhancer regions.
197 g-read nanopore sequencing to directly infer CpG methylation of novel and extant TE insertions in hip
198 egulation of DNMT3B results in decreased non-CpG methylation of RE1 sequences, reduced REST occupancy
199 rate that DNMT3B preferentially mediates non-CpG methylation of REST-targeted genes in the developing
200 ells in vitro and in vivo is associated with CpG methylation of several regions of the Cd8a locus.
201 E and airway eosinophilia and alterations in CpG methylation of T-helper genes in third-generation mi
204 s also associated with a modest reduction in CpG methylation of the INS gene in cord blood mononuclea
205 configuration was required, because in vitro CpG methylation of the MOR promoter abolished MSK1 activ
206 cell lines through histone deacetylation and CpG methylation of the promoter region and can be re-act
208 yltransferases (Dnmt1 and Dnmt3a) and lowers CpG methylation of the survival gene promoters, leading
209 ngineered meganucleases can be diminished by CpG methylation of the targeted endogenous site, and we
210 y in cancer cells, being able to inhibit the CpG methylation of tumor suppressor gene (TSG) promoters
216 a genomewide method for detecting regions of CpG methylation on the basis of the increased melting te
218 whose expressions were regulated by LADs or CpG methylation, or by both, the latter pertained to gen
219 in utero exposure to BPA altered the global CpG methylation pattern of the uterine genome, subsequen
220 ries of pregnancy within our study reveals a CpG methylation pattern that is restricted to female ani
221 ethod was further validated by comparing the CpG methylation pattern, methylation profile of CGIs/pro
223 effects of changes in leukocyte fractions on CpG methylation patterns as well as the potential import
224 vide a valuable resource for the analysis of CpG methylation patterns in a differentiated human cell
225 lation microarrays to analyze differences in CpG methylation patterns in cells relevant to the pathog
227 rather than stochastic variation, read-level CpG methylation patterns in tissue whole genome bisulfit
228 uBCpG), and explored variation in read-level CpG methylation patterns in whole genome bisulfite seque
229 show 381 genes with significantly different CpG methylation patterns, with the vast majority being m
230 epigenetic analyses, our data indicate that CpG methylation plays a major role in neuroepigenetics,
232 erase Dnmt1, which preserves the patterns of CpG methylation, plays a key role in CAG repeat instabil
234 and unmethylated compartments and estimates CpG methylation probabilities at single base resolution.
235 In utero BPA exposure altered the global CpG methylation profile of the uterine genome and subseq
241 our data demonstrate that IGSF4 silencing by CpG methylation provides an anti-apoptotic signal to HRS
243 iations between cumulative lead exposure and CpG methylation remained unaltered from 30 to 78 months.
244 n from sequencing reads to a fully annotated CpG methylation report to biological interpretation.
245 s], SNPs, single nucleotide variants [SNVs], CpG methylation).RESULTSWe documented greater than 100-f
247 In this study, we performed genome-wide CpG methylation sequencing of chondrosarcoma biopsies an
250 s the epigenetic state of DNA by replicating CpG methylation signatures from parent to daughter stran
254 d for the presence of potentially functional CpG-methylation sites in enhancer and insulator regions
255 ated genes do not harbor more age-associated CpG-methylation sites than other genes, but are instead
256 ive smoking dose) with blood DNAm in 790,026 CpGs (methylation sites) measured with the Illumina Infi
258 Our model can successfully infer unobserved CpG methylation states from observations at the same sit
259 ers in conjunction with the determination of CpG methylation states in the repeat expansion and in ad
260 me bisulfite sequencing datasets by imputing CpG methylation states on individual sequencing reads.
261 erent epi-allelic haplotypes, annotated with CpG methylation status and DNA polymorphisms, from whole
262 s enabled quantitative measurement of single CpG methylation status at relatively low cost and sample
263 study, we investigated gene copy number and CpG methylation status in CRPC to gain insight into spec
266 nd miR-200b) and pyrosequencing to determine CpG methylation status of selected genes (Aph1a and Dkk4
267 ular memory and imprinting by regulating the CpG methylation status of specific promoter regions.
268 isulfite sequencing (scRRBS), to measure the CpG methylation status on the same cell for cell type in
270 d strategy for parallel determination of the CpG-methylation status of thousands of Alu repeats, and
272 1) this is the first report to indicate that CpG methylation susceptible "segments" exist; 2) our mod
273 n carriers, have a greater reduction of D4Z4 CpG methylation than can be expected based on the size o
274 nomic copy of the promoter element showed no CpG methylation, the same sequence carried by the transg
275 ry pathway that connects aberrant intergenic CpG methylation to human neoplastic and developmental ov
276 ional organization, and possesses a complete CpG methylation toolkit, its predicted genomic CpG conte
277 ed Infinium(R) Assay is used for analysis of CpG methylation using bisulfite-converted genomic DNA.
279 identified in GLU and GABA neurons, and non-CpG methylation was a better predictor of subtype-specif
281 y for drug repositioning, while for 36 genes CpG methylation was found to influence transcription ind
286 Using penalised regression on genome-wide CpG methylation, we tested whether DNAm risk scores (MRS
287 ss associations between arsenic exposure and CpG methylation, we used linear regression models adjust
288 are strongly biased to light (L)-strand non-CpG methylation with conserved peak loci preferentially
289 tor-2 inhibition mechanisms of KLF4 promoter CpG methylation with regional consequences for atherosus
290 triking convergence of both CpG and CpH (non-CpG) methylation with pluripotent states; the pluripoten
291 widespread cell type-specific differences in CpG methylation, with a genome-wide tendency for neurona
292 evel of global methylation and extent of non-CpG methylation, with hESC highest, fibroblasts intermed
294 arch to date for allele-specific patterns of CpG methylation within CpG isochores or CpG enriched seg
295 ion, protein expression, gene expression and CpG methylation within Forkhead box P3 (FOXP3) and inter
296 that was associated with increased levels of CpG methylation within the FOXP3 locus when compared to
300 ng of YY1 to DXZ4 in vitro is not blocked by CpG methylation, yet in vivo both proteins are restricte