コーパス検索結果 (left1)
通し番号をクリックするとPubMedの該当ページを表示します
1 DMR analysis identified 47 regions associated with the P
2 DMR detection is then carried out via a Wald test proced
3 DMRs found overlapping CpG islands and exons of imprinte
4 DMRs included six nonoverlapping DMRs (three in the Neth
5 DMRs located within intergenic regions were heavily enri
6 -0.0013; 95% CI: -0.0023, -0.0003, p = 0.01) DMR methylation, but primarily in females, (beta = -0.00
11 for asthma (285-CpGs), FeNO (8,372-CpGs; 191-DMRs), total IgE (3-CpGs; 3-DMRs), environment IgE (17-C
12 Rs of 648 genes were hypermethylated and 274 DMRs of 336 genes were hypomethylated in trained group c
13 , vitamin B-12 intake was associated with 29 DMRs annotated to 48 genes, of which the most significan
14 (8,372-CpGs; 191-DMRs), total IgE (3-CpGs; 3-DMRs), environment IgE (17-CpGs; 4-DMRs), allergic asthm
15 thylated region (DMR) approach, we found 315 DMRs between groups, including 28 regions encompassing 6
20 3-CpGs; 3-DMRs), environment IgE (17-CpGs; 4-DMRs), allergic asthma (1,235-CpGs; 7-DMRs) and bronchod
29 ethylome and returning potentially novel age DMRs, in addition to replicating several loci implicated
30 mbined into "allostatic load") and agnostic (DMR-based) pathway enrichment tests, and replicated prev
31 eriments in which accuracy of mC calling and DMR detection is evaluated on simulated data with variou
32 texts, read qualities, sequencing depths and DMR lengths, as well as on real data from a wide range o
33 ns between methylation at candidate DMPs and DMR sites and the following outcomes: newborn weight, ad
34 he genes identified in both the CpG site and DMR approaches were located in the MHC region on chromos
35 Several differentially methylated CpGs and DMRs associated with prenatal PM exposure were identifie
36 y methylated positions and regions (DMPs and DMRs) were identified through linear regression analysis
43 stricted ASM, and among them are 188 hap-ASM DMRs and 933 mQTLs located near GWAS signals for immune
44 ng sites were over-represented among hap-ASM DMRs and mQTLs, and analysis of the human data, suppleme
48 egional analysis showed 74 folate-associated DMRs, of which 73 were negatively associated with folate
54 e define patterns of epigenetic variation at DMRs, identifying rare individuals with global gain or l
57 indicate that the interactive loops between DMRs and respective downstream genes are present in B73,
58 ARK2, PID1, SLC2A2, and SOCS2, that had both DMRs and significant expression changes in T2D islets.
59 ic DMRs (t-DMRs) and cancer-specific DMRs (c-DMRs), and 5hmC is negatively correlated with methylatio
60 nces in both CpG and non-CpG methylation (CG-DMRs and CH-DMRs) only in neuronal cells across brain re
62 ith differential gene expression, whereas CG-DMRs were consistent with chromatin accessibility and en
67 ntegrated network analysis, BRCA1 and CRISP2 DMRs were identified as most central disease-associated
70 shows that ABBA has greater power to detect DMRs than existing methods, providing an accurate identi
76 al aspects that we can improve over existing DMR detection (i) methylation statuses of nearby CpG sit
81 fter comprehensive adjustment, including for DMR severity (adjusted hazard ratio [HR]: 1.05 [95% conf
85 that AFF3 can specifically bind both gametic DMRs (gDMRs) and enhancers within imprinted loci in an a
90 ially methylated region upstream of H19 (H19-DMR), serving as the imprinting control region, determin
91 ion of the maternal but not the paternal H19-DMR reduces adult haematopoietic stem cell quiescence, a
92 We found that heavy infection (i.e., high DMR) resulted in reduced growth during all four measurem
95 on factor binding sites located within human DMRs, suggesting that alteration of regulatory motifs un
96 riod was associated with higher PLAGL1/HYMAI DMR methylation regardless of sex (beta = 0.0075; 95% CI
99 esent a novel program, metilene, to identify DMRs within whole-genome and targeted data with unrivale
101 19 different chromosomes, defining imprinted DMRs as sites where the maternal and paternal methylatio
102 me-wide approach to identify novel imprinted DMRs in the human placenta and investigated the dynamics
103 Forty-three known and 101 novel imprinted DMRs were identified in the human placenta by comparing
104 investigated the dynamics of these imprinted DMRs during development in somatic and extraembryonic ti
105 t assays (two CpG islands and six imprinting DMRs) and demonstrated its benefits, including the abili
109 tionally, the ability to detect short length DMRs is necessary as biologically relevant signal may oc
110 ene 3 differentially methylated region (MEG3-DMR), which acts as a cis-regulatory element for 14q32 m
111 5-Aza-dC activated demethylation of the MEG3-DMR and expression of 14q32 miRNAs, which suppressed adh
113 group comparisons, MethylAction detects more DMRs with strong differential methylation measurements c
114 es of neonatal keratinocytes share many more DMRs with adult breast luminal and myoepithelial cells t
119 The frequent left atrial enlargement of DMR as measured by LAVI in routine practice displays, ov
122 th older age and more severe presentation of DMR, it is independently associated with excess mortalit
123 d across the entire population regardless of DMR level, and (b) both moderate and heavy infections re
124 ct locations of DMRs and better agreement of DMRs with gene expression and DNase I hypersensitivity.
125 there is little evidence for association of DMRs with genes that show quantitative differences in ge
126 nal statistical test allows the detection of DMRs in large methylation experiments with multiple grou
129 s insights into the origin and influences of DMRs in a crop species with a complex genome organizatio
130 he sequence specificity of DMRs, location of DMRs relative to genes and transposons, and patterns of
131 imates of mC levels, more exact locations of DMRs and better agreement of DMRs with gene expression a
133 racterization of the sequence specificity of DMRs, location of DMRs relative to genes and transposons
137 To demonstrate further the utility of our DMR set, we use it to classify unknown samples and ident
141 on and further exploratory analysis of six P-DMRs highlight the critical role of gestational timing.
143 restingly, differential methylation of the P-DMRs extends along pathways related to growth and metabo
144 sociated with a significant decrease in PEG3 DMR methylation (beta = -0.0014; 95% CI: -0.0023, -0.000
145 blocker profiling showed that the pinacidil DMR is due to the activation of SUR2/Kir6.2 KATP channel
146 cted a comprehensive evaluation of 4 popular DMR analysis tools under 60 different parameter settings
147 , FAM92A1, MIR155HG, and VWA8) with promoter DMRs and expression associated with overall survival (OS
150 is by comparing the distant metastasis rate (DMR) on initial (18)F-FDG PET/CT in a group of breast ca
154 tically similar dynamic mass redistribution (DMR) signals in A431, A549, HT29 and HepG2C3A, but not i
156 revealed a differentially methylated region (DMR) adjacent to the distal PR-binding site (PRBS) 87 kb
157 Using a differentially-methylated region (DMR) approach, we found 315 DMRs between groups, includi
159 e upstream differentially methylated region (DMR), which also included the site motifs for the enhanc
161 Multiple differentially methylated regions (DMR) could be identified in atherosclerosis patients, re
162 lly methylated positions (DMPs) and regions (DMRs), and a pathway analysis was performed on the DMR a
164 ly methylated CpGs (FDR < 0.05) and Regions (DMRs; >= 5-CpGs and FDR < 0.05) for asthma (285-CpGs), F
165 for differentially methylated gene regions (DMRs) using a methylated DNA immunoprecipitation on chip
166 and the DMRcate method to identify regions (DMRs) and conducted gene ontology enrichment analysis.
167 5 hap-ASM differentially methylated regions (DMRs) and 3,082 strong methylation quantitative trait lo
168 ificantly differentially methylated regions (DMRs) and 963 differentially methylated genes (DMGs) wer
169 that differentially DNA-methylated regions (DMRs) and enhancers are two major classes of cis-element
170 D-related differentially methylated regions (DMRs) and replicate the top signals in 42 unrelated T2D
171 ependent, differentially methylated regions (DMRs) are identical to the DMRs recently identified in u
172 usands of differentially methylated regions (DMRs) are identified population-wide that are correlated
175 fied 1027 differentially methylated regions (DMRs) associated with parental THC exposure in F1 adults
176 dentified differentially methylated regions (DMRs) associated with prognostic mutations in older (>/=
179 al of 400 differentially methylated regions (DMRs) discriminated placentas stored from children later
181 to detect differentially methylated regions (DMRs) from whole-genome bisulfite sequencing (WGBS).
182 Of 811 differentially methylated regions (DMRs) identified in ACF, 537 (66%) were hypermethylated
185 identify differentially methylated regions (DMRs) in diabetic islets, and to investigate the functio
187 imprinted differentially methylated regions (DMRs) in gametes or their maintenance in early embryogen
189 ndreds of differentially methylated regions (DMRs) in humans compared to non-human primates and estim
190 sites and differentially methylated regions (DMRs) in relation to 1-y average aircraft, railway, and
192 ion at 12 differentially methylated regions (DMRs) in the genes: APOB, MUC4, EDN2, ZFP57, GPX6, CFAP4
194 ection of differentially methylated regions (DMRs) is a necessary prerequisite for characterizing dif
196 ified 167 differentially methylated regions (DMRs) of DNA at baseline that distinguished responders f
197 -specific differentially methylated regions (DMRs) often overlap tissue-specific distal cis-regulator
198 ssociated differentially methylated regions (DMRs) passed Bonferroni correction (P-value < 1.15 x 10(
199 entifying differentially methylated regions (DMRs) remains a challenging task because of the complexi
201 everaging differentially methylated regions (DMRs) specific to cell type, identified from DNAm measur
202 erlapping differentially methylated regions (DMRs) such as hypermethylated CpG islands, which may acc
203 an 16,000 differentially methylated regions (DMRs) that are distributed across the 10 maize chromosom
204 ulated by differentially methylated regions (DMRs) that are established in the germline and maintaine
205 alter the differentially methylated regions (DMRs) that control the monoallelic expression of imprint
206 to detect differentially methylated regions (DMRs) that uses combined signals from differential methy
207 ified 557 differentially methylated regions (DMRs) that were overrepresented ([Formula: see text]) in
208 gnificant differentially methylated regions (DMRs) using a bump hunting approach and a permutation-ba
209 -specific differentially methylated regions (DMRs) were found in genes involved in metabolic pathways
210 nd 20 556 differentially methylated regions (DMRs) were identified by comparing the methylomes of dml
211 0.05 and differentially methylated regions (DMRs) were identified using comb-p (Sidak-adjusted p < 0
212 to reveal differentially methylated regions (DMRs) with context-specific functional correlations.
213 ontaining differentially methylated regions (DMRs) with negative correlation between their expression
214 level of differentially methylated regions (DMRs), and bootstrapping determines false discovery rate
215 cohort of differentially methylated regions (DMRs), most of which gain DNA methylation between the ea
216 Ps) and 5 differentially methylated regions (DMRs), which we study in detail using whole genome bisul
222 ied 2,130 differentially methylated regions (DMRs; <5% false discovery rate), of which 738 are associ
223 e-specific differential methylation regions (DMRs) overlapping enhancers, including super-enhancers (
224 ure of differential DNA methylation regions (DMRs) was identified to be associated with male idiopath
225 nificant differentially methylation regions (DMRs) were identified in the Netherlands Twin Register,
229 equent in degenerative mitral regurgitation (DMR), but its link to outcomes remains unproven in routi
231 method identified additional cancer-related DMRs that were missed by methods using one type of signa
232 eam that retrospectively evaluated high-risk DMR patients enrolled in the EVEREST (Endovascular Valve
236 , LAVI measurement should be part of routine DMR evaluation and the clinical decision-making process.
242 eQTLs where a methylation change at a single DMR is associated with transcriptional changes in a subs
243 e-specific DMRs (t-DMRs) and cancer-specific DMRs (c-DMRs), and 5hmC is negatively correlated with me
244 fy thousands of developmental stage-specific DMRs (dsDMRs) across zebrafish developmental stages.
245 gnificantly enriched in both tissue-specific DMRs (t-DMRs) and cancer-specific DMRs (c-DMRs), and 5hm
246 ised methods for use when cell-type specific DMRs are not available, allowing scientists to estimate
247 tly enriched in both tissue-specific DMRs (t-DMRs) and cancer-specific DMRs (c-DMRs), and 5hmC is neg
248 two trait-associated DMRs, vgt1-DMR and tb1-DMR, HiChIP data indicate that the interactive loops bet
249 ] exposure, of which two [Formula: see text] DMRs, including H19 and MARCH11, replicated in newborns.
250 re, gene ontology analysis demonstrated that DMRs associated with promoters were enriched for genes i
251 ted genetic variation provided evidence that DMRs can occur without local sequence variation, but the
256 G PET/CT examinations were reviewed, and the DMR was recorded for each clinical stage subgroup (stage
258 he bounds of a haplotype block; however, the DMR remained significant after accounting for SNPs in th
260 cytosine guanine dinucleotide status of the DMR correlated with expression of the miRNAs following a
265 Pathway deconvolution revealed that the DMR of epinephrine is originated mostly from the remodel
269 how that AG-haESCs carrying deletions in the DMRs (differentially DNA methylated regions) controlling
270 -specific DNA methylation differences in the DMRs of PEG3, IGF2/H19, and PLAGL1/HYMAI in adulthood.
271 genetic markers reveals that over 60% of the DMRs are not tagged by SNPs, suggesting the presence of
272 sociation scan found that nearly half of the DMRs with common variation are significantly associated
273 analysis results, including the size of the DMRs, overlap between the methods and execution time.
280 a substantial number of genes; four of these DMRs are near transcription factors (castor zinc finger
283 The methylation level for each of these DMRs was also assayed in 31 additional maize or teosinte
286 ctive cohort, we then examined whether these DMRs were also relevant for the development of deploymen
288 Mortality rates were positively related to DMR, but only during the warm and dry measurement interv
292 he current study also identified genome-wide DMRs that were associated with the patients that were re
293 , multicenter, international experience with DMR due to flail leaflets echocardiographically diagnose
296 ences in gene expression are associated with DMRs, and there is little evidence for association of DM
298 methylation at IRS2 was unaffected by within DMR genotype but modified by preconceptional maternal pr