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1 om each individual is identified by a unique DNA barcode.
2 fold when compared to the use of a monomeric DNA barcode.
3 on, with each domain being assigned a unique DNA barcode.
4 l library containing a highly diverse set of DNA barcodes.
5 fication through the use of species-specific DNA barcodes.
6 roach: high-resolution lineage tracking with DNA barcodes.
7 roducts, whilst still preserving the cognate DNA barcodes.
8 ction of ligand binding by quantification of DNA barcodes.
9 image-based readout of short (20-base-pair) DNA barcodes.
10 led through the use of reagents labeled with DNA barcodes.
11 ies diversity and community composition with DNA barcodes.
12 fied 265 specimens to species or genus using DNA barcodes.
13 and contig overlap tailored to the needs of DNA barcoding.
14 ent and can introduce serious ambiguity into DNA barcoding.
15 d in the literature or be identified through DNA barcoding.
16 a cost-effective method for high-throughput DNA barcoding.
17 idual droplets for messenger RNA and genomic DNA barcoding.
18 and its molecular identity was verified with DNA barcoding.
19 methods based on microscopic examination and DNA barcoding.
20 esigned a three-step pipeline for multilocus DNA barcoding.
23 mitochondrial and nuclear markers, 5670 bp), DNA-barcoding (98 Holarctic specimens), morphometry (88
24 Enrichment Barcoding (MEBarcoding) for plant DNA Barcoding, a cost-effective method for high-throughp
25 d using sequence-based applications, such as DNA barcoding, a diagnostic technique that utilizes PCR
30 es of nucleic acid barcodes (b-mRNA versus a DNA barcode) altered in vivo delivery, suggesting that t
32 ergent from orthologous mtDNA sequences, and DNA barcoding analysis incorrectly overestimates the num
33 a high-throughput quantitative method using DNA barcodes and a next-generation sequencing technology
34 equencing to generate large amounts of plant DNA barcodes and build more comprehensive barcode databa
35 alytical challenges to lineage tracking with DNA barcodes and discuss its applications to studies of
36 ge subunit (LSU) rRNA gene have been used as DNA barcodes and for phylogenetic studies in different e
39 NT-seq quantifies how dozens of LNPs deliver DNA barcodes and mRNA into cells, the subsequent protein
40 t couples multiplex PCR with sample-specific DNA barcodes and next-generation sequencing to enable hi
43 mediated homology-directed repair (HDR) with DNA barcoding and high-throughput sequencing to simultan
47 ose a potential impediment to application of DNA barcoding and metagenomics for biomonitoring using b
52 imal connectome sequencing), which leverages DNA barcoding and sequencing to map connectivity from si
54 cola, and S. integrifolia were identified by DNA barcoding, and phylogenetic relationships were estab
55 Complementary approaches (stomach contents, DNA barcoding, and stable isotopes) were used to examine
56 highly multiplexed signal amplification via DNA-barcoded antibodies and orthogonal DNA concatemers g
57 to enable combinatorially indexed dsc-seq of DNA-barcoded antibodies from over 10(5) cells per reacti
60 aining with either fluorophore-conjugated or DNA-barcoded antibodies, through an optimized immunostai
61 velopment and validation of a photocleavable DNA barcode-antibody conjugate method for rapid, quantit
67 t identifications at the species-level using DNA barcodes are feasible, cost-effective, and reliable,
71 boratory and our own used retrovirus-encoded DNA barcodes as unambiguous lineage-tracing tools to add
74 sed on host identification by morphology and DNA barcoding, as well as the morphology and phylogeneti
75 is study was to compare the performance of a DNA-barcode assay with fatty acid profile analysis to au
76 tes single cell transcriptome profiling with DNA barcode based clonal tracking in patient-derived xen
77 0 genera and 12 families were analyzed using DNA barcodes based on the ITS2 and psbA-trnH sequences.
79 that these data will motivate discussions on DNA barcoding based species identification as applied to
80 ication of nanoparticle delivery (FIND) is a DNA barcode-based system designed to measure how over 10
82 matK + trnH-psbA is currently applicable for DNA barcoding-based phylogenetic studies on forest commu
83 chain blocking group to enable synthesis of DNA barcoded beads having capture sequences for the cons
84 om tissue sections onto a surface covered in DNA-barcoded beads with known positions, allowing the lo
85 to sensitively read out compact and diverse DNA barcodes by imaging will facilitate a broad range of
86 a relatively new method based on the use of DNA barcodes can authenticate the biological origin of t
91 roliferation assay on a pooled collection of DNA-barcoded cell lines, we identify a subset of cancer
92 alidation of DOS-DEL-1, a library of 107 616 DNA-barcoded chiral 2,3-disubsituted azetidines and pyrr
94 sembly onto streptavidin (SA) to generate SA-DNA barcode complexes to increase the number and density
96 Here, we propose a binding-based screen of DNA-barcoded compounds on a target protein in the presen
97 o-CRISPR" assay, we used anti-CXCL9 antibody-DNA barcode conjugates to target CXCL9 and amplify fluor
98 ve approach involving chemical profiling and DNA barcoding could be applied for authentication of Ice
99 h analysis of over 600 specimens, we provide DNA barcode coverage for 35 described species and 70 mol
100 compared with morphological identifications, DNA barcodes (cytochrome oxidase I) revealed significant
101 n under-representation of parasitoids within DNA-barcode databases (we estimate <5% have a barcode).
102 combination of morphological and multi-locus DNA barcoding diagnoses of diverse arthropod lineages.
104 DNA bioconjugation assays in DNA biosensor, DNA barcode, DNA nanostructures, and DNA ultra-resolutio
106 we add complete nuclear genome sequencing to DNA barcoding, ecological distribution, natural history,
110 compound collections individually linked to DNA barcodes, facilitating pooled construction and scree
111 eninsula with unprecedented resolution (3502 DNA barcodes for all 228 species), creating a reliable s
112 length proteins covalently coupled to unique DNA barcodes for analysis by sequencing can be used for
114 Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eu
116 latform employs novel affinity-discriminated DNA barcodes for multistate decoding with exponential mu
117 Our integrated approach confirmed novel DNA barcodes for seven species (10 specimens) of woodbor
120 egion were developed by examining over 8,000 DNA barcodes from species in the U.S. Food and Drug Admi
122 from each treatment and processed to produce DNA barcodes from the mitochondrial gene cytochrome c ox
125 lling, and when identified correctly through DNA barcoding, had on average lower mercury than the oth
127 Recently, clonal labeling of cells using DNA barcodes has emerged as a powerful approach for iden
129 identification using DNA sequences, known as DNA barcoding has been widely used in many applied field
131 divergence among sister species, traditional DNA barcoding has not been successful for differentiatio
133 completed in 1.5 weeks, while automated RNA/DNA barcode hybridization and RNA/DNA imaging typically
137 658 base pairs of the cytochrome c oxidase I DNA barcode in 1,010 specimens from eleven orders of art
141 me b oxidase (COB), have been used to assess DNA barcoding in dinoflagellates, and both failed to amp
144 how that we can engineer phages by inserting DNA barcodes into newly identified inessential regions,
152 chnologies, sample identification (e.g., via DNA barcoding) is still most often done with Sanger sequ
153 Multiplexing (TaG-EM), involves inserting a DNA barcode just upstream of the polyadenylation site in
155 -specific neopeptide libraries consisting of DNA barcode-labelled pMHC multimers in a cohort of 24 pa
158 tions and 101 individuals, built a Tribolium DNA barcode library, and designed species-specific prime
160 sted 96 samples for each of the four primary DNA barcode loci in plants: rbcL, matK, trnH-psbA, and I
162 ple parallel amplification primers, multiple DNA barcode markers, 454-pyrosequencing, and Illumina Mi
166 High-throughput sequencing of environmental DNA barcodes (metabarcoding) offers an alternative to de
167 approach will eclipse existing single-locus DNA barcoding methods as a means to better understand th
168 s to better understand species overlap using DNA barcoding methods suggest coral species are widely d
171 vative step was to copy both strands of each DNA-barcoded molecule with a primer that allows the subs
172 re we used two high-throughput approaches, a DNA-barcoded mononucleosome library and a humanized yeas
173 h-throughput approach, based on the use of a DNA-barcoded mononucleosome library, to profile the bioc
174 terogeneity and dynamics, we used lentiviral DNA barcoding, mtDNA variants and single cell gene expre
176 is based on the streamlined semisynthesis of DNA-barcoded nucleosome libraries with distinct combinat
177 y relationship studies, including the use of DNA-barcoded nucleosome libraries, shows that steric hin
187 atially targeted, rapid photocrosslinking of DNA barcodes onto complementary DNAs in situ with a one-
191 he DNA oligonucleotide library, synthesis of DNA-barcoded peptide constructs, binding of constructs t
192 o main sections: (i) design and synthesis of DNA-barcoded peptide libraries and (ii) use of libraries
196 ces proximity records of any nearby pairs of DNA-barcoded probes, at physiological temperature, witho
201 the global BOLD Systems database holds core DNA barcodes (rbcL + matK) for about 15% of land plant s
202 orm for densely multiplexed, CRISPR-mediated DNA barcode readout that can potentially evaluate comple
204 etto dietary supplements was designed from a DNA barcode reference library created for this purpose.
206 ragments of the cytochrome c oxidase I (CO1) DNA barcode region were developed by examining over 8,00
207 then used to determine the sequence of the "DNA barcoding" region of the cytochrome c oxidase subuni
208 omic assemblages by deep sequencing of short DNA barcode regions (metabarcoding) have revolutionized
213 We replaced each effector with a specific DNA barcode sequence by allelic exchange and co-infected
214 ate how highly resolved phylogenies based on DNA barcode sequence data will enhance research focused
216 ur approach recovers a greater proportion of DNA barcode sequences from individuals than does convent
217 ved molecular phylogenies derived from these DNA barcode sequences have the potential to improve inve
218 m global CTFS-ForestGEO network, we analyzed DNA barcoding sequences of 1277 plant species from a wid
219 The tracking of lineage frequencies via DNA barcode sequencing enables the quantification of mic
220 e in many individuals, we used combinatorial DNA barcode sequencing to measure the fitness effects of
223 veness of hundreds of molecularly annotated 'DNA-barcoded' solid tumor cell lines in multiplexed form
226 roup of about 2000 described extant species, DNA barcoding studies have revealed large amounts of unr
227 eed for comprehensive reference databases in DNA barcoding studies, especially when dealing with inva
228 tern Cape and Gauteng) were identified using DNA barcoding, supplemented in certain cases with mitoch
231 to permit, within many droplets in parallel, DNA barcode tagging together with the mRNA molecules fro
232 ed intermolecular network of proximal unique DNA barcodes tagging complementary DNA molecules inside
233 Single-cell sequencing experiments use short DNA barcode 'tags' to identify reads that originate from
234 cation (MDA), low-input library preparation, DNA barcoding, targeted capture and next-generation sequ
237 hem to second-generation sequencing, using a DNA barcoding technique that allowed us to quantify inde
239 ses of clonal dynamics in SCP mixtures using DNA barcode technology revealed selection for distinct c
244 modular bacterial tags (MoBacTags) encoding DNA barcodes that enable tracking of near-isogenic bacte
245 ethods have been developed that add a unique DNA barcode to individual samples prior to pooling and s
246 mor growth dynamics and tagged with a unique DNA barcode to track their fate in multiclonal mixtures
247 Following target binding, this method allows DNA barcodes to be photoreleased in solution, enabling e
249 cing (scLT) methods use expressed, heritable DNA barcodes to combine cell lineage readout with single
250 op peptide-MHC (pMHC) tetramers labeled with DNA barcodes to detect single T cells by droplet digital
251 ule bisulfite sequencing and sample-specific DNA barcodes to determine the spectrum of MLH1 promoter
252 encoded in the number and sequence of short DNA barcodes to generate preparatory amounts of nanopart
253 uencing (Dub-seq), a method that uses random DNA barcodes to greatly increase experimental throughput
254 NA and recent single-cell RNAseq methods use DNA barcodes to identify samples and cells, and the barc
255 with the Genera of Fungi project, which adds DNA barcodes to known biodiversity and corrects the appl
256 plex (MHC) multimers labeled with individual DNA barcodes to screen >1,000 peptide specificities in a
257 l microfluidic channels were used to deliver DNA barcodes to the surface of a tissue slide, and cross
260 e results demonstrate (i) the sensitivity of DNA barcoding to detect plant feeding in malaria vectors
261 applicability of morphometric parameters and DNA barcoding to detect the adulterated timber sources.
263 PLC-QToF-MS chemical profiling together with DNA barcoding to distinguish species and chemotypes of t
264 sse CRISPR ribonucleoprotein injections, and DNA barcoding to enable large-scale functional genetic s
265 use of solid-state nanopores and multiplexed DNA barcoding to identify and characterize oligomers fro
267 ose of this study was to test the ability of DNA barcoding to identify the plant origins of processed
269 ged frozen fishery products, this study used DNA barcoding to investigate the breaded hake and plaice
270 limitations with a technology that leverages DNA barcoding to profile chromatin quantitatively and in
271 acterizing Pi-Lipids, we use high-throughput DNA barcoding to quantify how 65 chemically distinct LNP
273 s issue, we have demonstrated the utility of DNA barcoding to verify the taxonomic identity of fungi
274 or visualizing DNA sequence and using these 'DNA barcodes' to search complex mixtures of genomic mate
276 h traditional taxonomy and known, individual DNA barcodes ("traditional samples") or processed with m
278 t hundreds of genomic locations by combining DNA barcoding, unique split-pool encoding, and single ce
279 ll types in a single culture with the aid of DNA barcodes: unique sequences of DNA introduced to the
280 ersisting cells and identified by sequencing DNA barcodes uniquely labeling each of the tested cytoki
281 by converting a transcriptional event into a DNA barcode using a retron reverse transcriptase and the
282 e collected species was performed throughout DNA barcoding using ITS, rbcL, rpoC1 and matK sequences.
284 ralizing antibodies to block binding between DNA-barcoded viral spike protein subunit 1 and the human
285 ano-oscillator platform using self-assembled DNA-barcoded virion sensors is developed to address the
288 d to AAV capsid mutant libraries tagged with DNA barcodes, we can draw a high-resolution map of AAV c
289 Using CRISPR/Cas9 technology and specific DNA barcodes, we devised a strategy to recapitulate and
291 is report, we demonstrate that a three-locus DNA barcode when applied to 296 species of woody trees,
292 tive and practical alternative to exhaustive DNA barcoding when preparing sequencing libraries for hu
293 oximity ligation of RNAs with protein-linked DNA barcodes, which are subsequently decoded through seq
294 e complex organic compounds with amplifiable DNA barcodes, which could be easily incorporated into a
296 however, this is especially problematic for DNA barcoding, which attempts to characterize all living
298 and apply FateMap, a framework that combines DNA barcoding with single-cell RNA sequencing, to reveal
299 rmed a genome-wide screen using a library of DNA-barcoded yeast deletion mutants grown in copper-supp
300 aries displayed on phage that carries silent DNA-barcodes yields macrocyclic libraries in which the a