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1 scription initiation complex with a promoter DNA fragment.
2 a lower concentration to amplify its target DNA fragment.
3 and multiple copies of that gene are on one DNA fragment.
4 onal 270 bp DNA fragment and lacked a 450 bp DNA fragment.
5 apter oligonucleotides are hybridized to the DNA fragment.
6 samples containing small organic anions and DNA fragment.
7 vs. 11/20 aqueous samples along with shorter DNA fragments.
8 elective amplification of minute quantity of DNA fragments.
9 target at its center to generate blunt-ended DNA fragments.
10 d on micrometre scale for megabasepair-sized DNA fragments.
11 8 in complex with several origin of transfer DNA fragments.
12 ulti-gene circuitry assembled from different DNA fragments.
13 CHD4 interacts with PAX3-FOXO1 via short DNA fragments.
14 hat often require screening large numbers of DNA fragments.
15 mple droplets containing fluorescent dyes or DNA fragments.
16 he sequencing-adapters and the length of the DNA fragments.
17 as a single-base-pair change to insertion of DNA fragments.
18 aptamer was enzymatically cleaved into short DNA fragments.
19 thods for the detection of sequence-specific DNA fragments.
20 we find Hha improves H-NS binding to target DNA fragments.
21 vertices within a network of double-helical DNA fragments.
22 in a chiral liquid crystal containing short DNA fragments.
23 rom samples that are enriched for methylated DNA fragments.
24 to pry polymerase from incompletely extended DNA fragments.
25 that was more apparent on particular genomic DNA fragments.
26 rom samples that are enriched for methylated DNA fragments.
27 rhang but not of 5' overhangs or blunt-ended DNA fragments.
28 gregation process in a system containing 458 DNA fragments.
29 tiple and often large (up to at least 44 kb) DNA fragments.
30 e G-quadruplex targets have often been short DNA fragments.
31 lytic 3' -> 5' degradation of the individual DNA fragments.
32 ing undocumented cassettes and contaminating DNA fragments.
33 a preference for short (17- to 19-base-pair) DNA fragments.
34 orm thermal control for the amplification of DNA fragments.
35 of more than 8 million 20- to 300-kb genomic DNA fragments.
36 bp) and of 23S rDNA A2143G results in three DNA fragments (108, 310 and 350pb), due to a conserved B
37 RSE) is characterized by the capture of long DNA fragments (15-20 kb) by magnetic beads, after enzyma
38 27 and 37 bp) and its absence originated two DNA fragments (264 and 281 bp) due to a 16 S rDNA conser
39 cient non-mosaic targeted insertion of small DNA fragments (40-50 nucleotides) in 4.4-25.7% of F0 tad
40 Occurrence of 23S rDNA A2142G results in two DNA fragments (418 and 350 bp) and of 23S rDNA A2143G re
41 cally unfold structures in a human telomeric DNA fragment, 5'-(TTAGGG)4TTA, along three different tra
43 , FragSeq, and apply this method to identify DNA fragments accumulated in Escherichia coli cells unde
45 orphology and oligonucleosomal double-strand DNA fragments (also known as DNA ladder) are considered
47 tructures and melting points of the chimeric DNA fragment and its complexes with perfect-matched and
49 of Mg(2+) to release the fluorophore-labeled DNA fragment and produce a fluorescent turn-on signal fo
50 s, microfluidic partitioning of long genomic DNA fragments and barcoding of shorter fragments derived
52 ethods: umbrella sampling simulations of two DNA fragments and direct observation of the aggregation
53 accommodates parallel nicking on orthogonal DNA fragments and enzymatic toehold creation that enable
54 chnique was tested on complexes of two model DNA fragments and four ligands, namely, a representative
55 we demonstrate that TOP-PCR recovers minute DNA fragments and maintains the DNA size profile, while
56 e, and high-throughput method to internalize DNA fragments and proteins labeled with organic fluoroph
59 EXO1), play a major role in generating these DNA fragments and that the cytoplasmic 3'-5' exonuclease
60 DNA samples between the number of surviving DNA fragments and their length, ancient DNA sequencing l
61 " read duplicates that represent independent DNA fragments and therefore, over-estimate the PCR dupli
62 , a dye is used to intercalate the amplified DNA fragments, and identifications of the pathogens are
63 lysis of incompetent streptococci, uptake of DNA fragments, and integration of strands of that DNA in
64 med the binding of YY1 to unprocessed let-7a DNA fragments, and treatment with YY1 shRNA increased le
65 al cell/glycocalyx damage (histone-complexed DNA fragments, annexin V, thrombomodulin, syndecan-1), p
66 easing the rate at which externally supplied DNA fragments are incorporated into the genome through h
67 cation of this recovery method, biotinylated DNA fragments are isolated from a mixed solution to prov
68 gments with a length between 140 and 180 bp) DNA fragments are recovered and sequenced on Illumina Hi
70 e-5-methylenesulfonate (CMS); CMS-containing DNA fragments are then immunoprecipitated using a CMS-sp
71 s that genomic sequencing coverage of plasma DNA fragments around transcription start sites reflects
73 demonstrate a convenient rapid procedure for DNA fragment assembly using site-specific recombination
77 wn strategy enables the isolation of genomic DNA fragments bearing single, as well as multiple G-quad
78 PARPi promoted accumulation of cytosolic DNA fragments because of unresolved DNA lesions, which i
80 e report that, despite the large size of the DNA fragment, both plasmid integration and duplication r
82 and on the inversion of a central 32-kb-long DNA fragment, but overall their genomes displayed a high
84 ication of the target deoxyribonucleic acid (DNA) fragments by using single-nucleotide-polymorphism p
85 In Drosophila, PcG proteins are bound to DNA fragments called Polycomb group response elements (P
87 rapping patterned cells inside gels, damaged DNA fragment can diffuse out of the nucleus and form a h
89 oach is also able to distinguish between two DNA fragments carrying both N6-methyladenine and 5-methy
90 library construction methods that enrich for DNA fragments carrying deaminated cytosine residues, we
91 CC-seq signal reveals regional enrichment of DNA fragments characteristic of alternating rather than
93 this hairpin formation or the addition of a DNA fragment complementary to the hairpin destroys the c
96 1 or its isolated CID domain to a methylated DNA fragment containing alternating purine/pyrimidines,
100 eavage of a UG duplex generates the expected DNA fragments containing a 5'-terminal deoxyuridine mono
101 stranded DNA substrates to generate unhooked DNA fragments containing either an abasic site or a psor
102 viously showed that both linear and circular DNA fragments containing the 2-LTR palindrome junction c
103 rough ultrathin solid-state nanopores, short DNA fragments containing thymine modifications were foun
104 lus RNA polymerase, sigma(A), and a promoter DNA fragment corresponding to the transcription bubble a
106 we used to simultaneously assess over 80,000 DNA fragments derived from nucleosome-free regions withi
108 ing in vitro on four plasmid DNAs containing DNA fragments derived from the genomes of sheep, drosoph
110 h the cleavage sites that generate the 50 kb DNA fragments during the first stages of programmed cell
111 is also involved in the generation of small DNA fragments during the repair of high LET radiation-in
112 ion, we show that insertion of mitochondrial DNA fragments during the repair of induced double-strand
113 (SuRE), a method that assays more than 10(8) DNA fragments, each 0.2-2 kb in size, for their ability
114 ation, we combined CRISPR/Cas9-based genomic-DNA-fragment editing with chromosome-conformation-captur
115 molecular enrichment for promoter-containing DNA fragments enables the systematic mapping of interact
116 is-tagged CouR bound with high affinity to a DNA fragment encompassing the couAB promoter region, and
117 ke the probability of placement, the size of DNA fragments enriched for nucleosomes and/or whether nu
118 nal deep sequencing of short single-stranded DNA fragments enriched for RNA-primed nascent strands is
121 18S-ITS-5.8S, 28S D2/D3 and a mitochondrial DNA fragment flanking cytochrome oxidase gene subunit II
124 caspases in tumor cells to produce abundant DNA fragments for DNA sensing in antigen-presenting cell
127 lpha/primase complex assembles the short RNA-DNA fragments for priming of lagging and leading strand
128 nce allows bacteria to internalize exogenous DNA fragments for the acquisition of new phenotypes such
130 rand-specific, high-throughput sequencing of DNA fragments, FragSeq, and apply this method to identif
131 present the discovery of a 36-kilo-base pair DNA fragment from Vibrio splendidus encoding enzymes for
134 previously identified in silico evidence of DNA fragments from a Pseudomonas-like bacteria integrati
135 , we describe an advanced system for joining DNA fragments from a universal library that automaticall
138 nes to amplify 172, 163, 141, 129 and 108 bp DNA fragments from cat, dog, pig, monkey and rat meats,
139 rom regions where either genome has acquired DNA fragments from diverged genomes by homologous recomb
142 roughput functional selection to isolate ten DNA fragments from human oral and fecal metagenomes that
143 CRISPR-Cas adaptive immune systems capture DNA fragments from invading bacteriophages and plasmids
144 preparation protocols to better retain short DNA fragments from plasma, and applied these optimized m
145 n improved method for the isolation of small DNA fragments from serum using selective precipitation b
147 to provide high-confidence identification of DNA fragments from uncultivated members of the Roseobact
149 gargammel, a package that simulates ancient DNA fragments given a set of known reference genomes.
151 for integrating optical mapping (OM) of long DNA fragments (>150 kb) with next-generation sequencing
153 is a truncated form of the genome into which DNA fragments harboring the structural genes are ligated
156 verlap sequences, we can assemble up to five DNA fragments in a defined order and insert them into a
157 hich allows the detection of less than 10000 DNA fragments in a sample of 100 muL (corresponding to ~
158 Poisson statistics to estimate the number of DNA fragments in a sample with a specific sequence.
159 hat helps determine the size distribution of DNA fragments in an NGS library, or other DNA sample, ba
161 ed were all intronic T-DNA mutants and the T-DNA fragments in both the trigger T-DNA as well as in th
162 ent for Sequence Analysis), isolates genomic DNA fragments in microfluidic droplets and performs TaqM
163 ful because they enable assembly of multiple DNA fragments in one reaction, at the cost of requiring
164 s the highly selective extraction of desired DNA fragments in order to minimize interferences from sa
165 developed an approach to identify rearranged DNA fragments in sera, providing personalized biomarkers
166 lack of Trex2 results in the accumulation of DNA fragments in the cytoplasm of cornifying lingual ker
167 uid biopsy analysis of circulating cell-free DNA fragments in the patients' blood can monitor clonali
168 us behavior of the double helix happens when DNA fragments in the range of 100 bp are circularized wi
170 NII is fully embedded in CP, we inserted HBV DNA fragments in the sense orientation to determine thei
171 mbinants had received multiple donor-derived DNA fragments in the size range of 100 bp to 118 kbp, fr
172 entists have observed small extrachromosomal DNA fragments in tumor cells, yet comprehensive examinat
174 cloning approaches use in vitro assembly of DNA fragments, in vivo cloning offers potential for grea
175 omes, FRET observed upon H1 binding to naked DNA fragments includes both intra- and inter-molecular r
177 ials of mean force between the H4 tail and a DNA fragment indicate that contrary to the expectations
178 DNA identified a peak at 145 bp in the human DNA fragments, indicating a difference in the origin or
179 is highly correlated with the length of the DNA fragments, indicating that the sizes of PCR products
180 (over 14%) of random plasmid or chromosomal DNA fragment insertion at the target sites in transgenic
181 hat restriction did not affect the length of DNA fragment integration during natural transformation.
182 restrictive, in that they packaged only one DNA fragment into the head, whereas motors with the 120-
184 tegrase associates with Cas2 to insert short DNA fragments into a CRISPR array, establishing nucleic
185 s by insertion of foreign (viral or plasmid) DNA fragments into clustered regularly interspaced short
187 ocation involves the integration of inactive DNA fragments into nuclear chromosomes, and this process
188 bacterial cell extracts to assemble multiple DNA fragments into recombinant DNA molecules in a single
189 grase to capture and integrate short foreign DNA fragments into the CRISPR locus, enabling adaptation
190 unity requires integration of short, foreign DNA fragments into the host genome at the CRISPR locus,
191 Generated through the random integration of DNA fragments into the host genome, transgenesis can lea
192 utions of monodisperse stiff double-stranded DNA fragments is known not to occur, despite the fact th
193 presence of present-day human contaminating DNA fragments is one of the challenges defining ancient
197 ieval, amplification and sequencing of trace DNA fragments left behind by marine organisms; an approa
199 ch which moves computational complexity from DNA fragment length to fragment overlap, i.e., coverage,
200 ), we observe a highly structured pattern of DNA fragment lengths and positions around nucleosomes in
201 ndependent resource for automatic scoring of DNA fragment lengths diversity panels and biparental pop
203 ue to high rates of nucleotide damage, short DNA fragment lengths, low endogenous DNA content and the
206 equences have diverged to a degree that most DNA fragments longer than 50 bp are unique to just one s
207 ffect is attributable, in part, to the small DNA fragments (</=40 bp) directly produced by high LET r
209 measurements accomplished using non-specific DNA fragments mixed with samples, revealed the high spec
211 ion pathway are located in a 25.2-kb genomic DNA fragment of CBB1, including cdhABC (coding for caffe
212 An interaction study of the C-dots and the DNA fragment of lambda bacteriophage was performed, and
214 Five promoter-reporter constructs containing DNA fragments of 0.74kb, 1.35kb, 1.84kb, 3.97kb and 4.76
216 med by simultaneously deleting and inserting DNA fragments of different sizes at a common genomic loc
217 LAMP amplification for 0.18 kbp and 0.23 kbp DNA fragments of femB and mecA genes, respectively.
218 ent on various preparative steps to generate DNA fragments of required concentration, purity and aver
220 on and partitioning of large single-stranded DNA fragments of the homologous chromosome pairs allows
221 Among the systems considered are a large DNA fragment, oligopeptides, and even entire proteins in
222 unction, a multitude of genes, and noncoding DNA fragments or on a number of lengthy sequence-typing
225 ing a Poisson distribution for the number of DNA fragments present in each chamber, the DNA concentra
226 r (double-digest restriction site-associated DNA fragment procedure [ddRAD]) and mitochondrial DNA se
227 single cells, while the subnucleosome-sized DNA fragments provide information on chromatin accessibi
228 ch as transcriptomics, the millions of short DNA fragments (reads) produced by current sequencing pla
229 meters yield very similar results for longer DNA fragments, regardless of the nucleotide sequence, wh
230 16 S rDNA TetR genotype resulted in a three DNA fragment restriction pattern (281, 227 and 37 bp) an
231 ow tumor fraction (TF) and limited number of DNA fragments restricts low-disease-burden monitoring th
235 s the simultaneous sequencing of billions of DNA fragments simultaneously, has revolutionized how we
236 at these high-resolution measurements of CMV DNA fragment size accurately predict measured discrepanc
238 l conditions, Ogston sieving is achieved for DNA fragments smaller than 500 base pairs, whereas repta
239 , Pyrococcus furiosus, actively incorporates DNA fragments (spacers) from both plasmid (foreign) and
241 ecule imaging with DNA chains assembled from DNA fragments such that a chain is labeled at designated
242 rticularly useful for inserting heterologous DNA fragments, such as GFP, into a specific genomic locu
243 this study, structural changes of 22-mer ht-DNA fragment (Tel22), induced by binding of ions (K(+),
244 volves adaptation, the integration of ~30-bp DNA fragments, termed prespacers, into the CRISPR array
245 rpin and a G-quadruplex in a single-stranded DNA fragment that is found in the promoter region of hum
247 ion score-which allows the identification of DNA fragments that are unlikely to originate from presen
248 talyzed by active transposases, can generate DNA fragments that are used by the CRISPR-Cas adaptation
250 tes as low as 10(-8) and average 500-kb-long DNA fragments that can be assembled into haplotype conti
251 ng methods have limitations on the number of DNA fragments that can be simultaneously manipulated, wh
253 without considering the transposase digested DNA fragments that contain additional nucleosome positio
254 h as the precise insertion or replacement of DNA fragments that contain the coding regions of genes.
255 Additionally, five genomic islands, e.g. DNA fragments that facilitate horizontal gene transfer p
256 nsic cyclizabilities of 270,806 50-base-pair DNA fragments that span Saccharomyces cerevisiae chromos
257 gile nucleosomes were defined by nucleosomal DNA fragments that were recovered preferentially in earl
258 sidering that just after dissociating from a DNA fragment the protein remains in close proximity to t
259 ifications, translocations and inversions of DNA fragments thereby modifying genome architecture, and
260 1L2 and Trex2 causes massive accumulation of DNA fragments throughout the cornified layers of the ton
261 Ecl18kI, interacts with a FRET pair-labeled DNA fragment to form two different DNA loop conformation
262 Because the selective physical adsorption of DNA fragments to gold enable a direct read-out of region
263 d repairing DNA template flanked by homology DNA fragments to the target site, were demonstrated to g
265 rmination of microsatellite lengths or other DNA fragment types is an important initial component of
266 bLC) technique was developed, which can move DNA fragments up to 40-kb directly and integrate a 73.7-
269 Furthermore, all three proteins bind to a DNA fragment upstream of the bmp2b transcription start s
272 ll lines: targeted cleavage of mitochondrial DNA fragments using CRISPR technology and removal of det
273 that enable the efficient assembly of linear DNA fragments, using reactions developed by Gibson for t
276 single molecule mapping of telomere-terminal DNA fragments, we provide proof of principle for a novel
278 ] and mitochondrial DNA [mtDNA]) and nuclear DNA fragments were measured in plasma from APAP-overdose
279 encies of receipt and donation of recombined DNA fragments were observed in non-encapsulated lineages
280 us detections of four conserved HIV-1 B-type DNA fragments were performed in this integrated microflu
281 l ndm genes are located in a 13.2-kb genomic DNA fragment which also contained a formaldehyde dehydro
282 resent a multiplex microarray-based assay of DNA fragments, which allows the detection of less than 1
283 uble-strand breaks (DSBs) that include small DNA fragments, which are not repaired by the non-homolog
284 e-elicited double-strand DNA breaks releases DNA fragments, which may either activate the cGAS/STING-
285 ure of S1-15 in complex with single-stranded DNA fragments, which may provide clues about the genesis
286 of stable RNAP complexes with model promoter DNA fragments whose downstream ends extend from +3 to +2
287 at provide a drag equivalent to an uncharged DNA fragment with a length (alpha) of 509 bases (effecti
288 ngle-stranded overhangs, if present, on each DNA fragment with an overall accuracy between 80-90%.
290 ) blocks end-joining of double-stranded (ds) DNA fragments with 3' overhangs mimicking double-strand
291 nsor has the ability to detect complementary DNA fragments with a detection limit down to 20 DNA targ
292 We show that competent V. cholerae acquire DNA fragments with a length exceeding 150 kbp in a T6SS-
296 verage with two signals: The first considers DNA fragments with only a single binding event, whereas