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1 tin packing during processing of the damaged DNA template.
2 e first one to face the opposite side of the DNA template.
3 result in two or more RNA transcripts from a DNA template.
4 ers of information can be stored in a single DNA template.
5 milar to the one observed with an unmodified DNA template.
6 echanochemical coupling in a single-molecule DNA template.
7 a inhibition in the presence of a platinated DNA template.
8 nfluence TFs that are already present on the DNA template.
9 s the synthesis of the messenger RNA using a DNA template.
10 allowing for a semi-quantitative analysis of DNA template.
11 ge of the transcript without movement of the DNA template.
12 10 nm in width, and take on the shape of the DNA template.
13 e produced is limited only by the underlying DNA template.
14 hat increase the rigidity of the neutralized DNA template.
15 de nanostructure inherits its shape from the DNA template.
16 ontinuity of DNA replication on an undamaged DNA template.
17 g complex and in sequence recognition in the DNA template.
18 ers a remarkable rearrangement of enzyme and DNA template.
19 with a double- and/or single-stranded donor DNA template.
20 araensis p41-p46 complex in the absence of a DNA template.
21 onsible for messenger RNA synthesis from the DNA template.
22 of specific sequences in the single-stranded DNA template.
23 thesized by varying the base sequence of the DNA template.
24 ascent RNA molecule produced in cis with its DNA template.
25 s priming the ParB for polymerization on the DNA template.
26 by blocking RNAP with a protein bound to the DNA template.
27 re it also shows a preference for T-T in the DNA template.
28 hylcytosine, and 5-formylcytosine are in the DNA template.
29 tion require simultaneous access to the same DNA template.
30 with digital droplet PCR detection of mutant DNA template.
31 -stranded DNA breaks or provision of a donor DNA template.
32 e, specific, and sensitive down to 0.32ng of DNA template.
33 then closes to establish a tight grip on the DNA template.
34 diting genomes when codelivered with a donor DNA template.
35 ld-type maternal gene instead of a synthetic DNA template.
36 had higher activity from a more supercoiled DNA template.
37 ing transcription only from extrachromosomal DNA templates.
38 ulating the types and ratios of the circular DNA templates.
39 ass synthesis on oxidative damage-containing DNA templates.
40 directly observe TALE search dynamics along DNA templates.
41 with affinity for supercoiled and catenated DNA templates.
42 omponents in spite of an excess of the other DNA templates.
43 e sequences in ensembles of nearly identical DNA templates.
44 I-dependent transcription of single-stranded DNA templates.
45 stalling during bypass of ribonucleotides in DNA templates.
46 se in mutation frequency when copying gapped DNA templates.
47 ll four nucleobases on homopolymeric RNA and DNA templates.
48 s containing 100k copies of coamplifying IAC DNA templates.
49 TP or dGTP into complementary, homopolymeric DNA templates.
50 This switch occurs only on RNA and not on DNA templates.
51 he effect of activators, compared with naked DNA templates.
52 ter reconstituted on naked and chromatinized DNA templates.
53 alt concentrations or negatively supercoiled DNA templates.
54 ctions of holo-TFIID molecules at individual DNA templates.
55 hout requiring double-strand breaks or donor DNA templates.
56 purified mitochondrial proteins and defined DNA templates.
57 and produced by in vitro transcription from DNA templates.
58 t simplifies the preparation of roadblocking DNA templates.
59 operly suppress DNA synthesis on UVB-damaged DNA templates.
60 and provided different single-stranded donor DNA templates.
61 Biotin and other bulky adducts in synthetic DNA templates.
62 and other NRTIs, when complexed with RNA or DNA templates.
63 , with respect to the deoxyribonucleic acid (DNA) template.
64 lex binding inhibits the formation of duplex DNA templating.
67 ation proceeds sequence specifically along a DNA template and can generate polymers of at least 50 bu
68 RT to the same extent on either an RNA or a DNA template and did not alter the RNase H cleavage patt
69 a in unliganded form, bound to an RNA primer/DNA template and extending an RNA primer with deoxynucle
70 second strand synthesis of a single-stranded DNA template and generate millions of pair-wise combinat
71 stranded loops embedded in a double-stranded DNA template and is programmed by a set of double-strand
72 iated by signals directly encoded within the DNA template and nascent RNA, whereas Rho-dependent term
73 ion happens in the context of defects in the DNA template and other forms of replication stress that
74 ent of these metabolites base-pairs with the DNA template and provides a 3'-OH group for RNA extensio
76 e rolling circle amplification of a circular DNA template and simultaneous overlap extension by therm
78 binding and also defines the elements of the DNA template and the RNA primer that interact with p58C.
79 ocess of transcription alters the underlying DNA template and thereby modifies the genetic landscape.
80 I integrates inputs from both strands of the DNA template and three dedicated protein subunits to tri
81 factors interacts directly with the promoter DNA template and with RNA polymerase (RNAP) holoenzyme.
82 ssembled from nuclear extract on immobilized DNA templates and analyzed by quantitative mass spectrom
83 ack targeted integrations of large non-viral DNA templates and applied it to perform pooled knockin s
85 hinery gains access to damaged chromatinized DNA templates and how the chromatin structure is modifie
88 ed towards the recovery of CpG-rich and long DNA templates and is limited by the fast post-mortem cyt
89 on, and amplification on a library of 10(14) DNA templates and observed approximately 380-fold enrich
90 regenerate essential protein components from DNA templates and sustain synthesis activity for over a
91 ts between the initial concentrations of HBV DNA templates and the system response (DeltaRU) at varyi
93 two serines or two phosphoserines, from one DNA template, and demonstrate programmable kinase activi
94 hat accumulate during replication of damaged DNA templates, and also clarify the roles played by Top3
98 nts from a surface-bound RNA primer, and the DNA templates are enzymatically destroyed, leaving behin
99 pective account of the transformation of the DNA template, as it evolved from naked DNA to chromatin,
103 e fundamental requirement in case of complex DNA templates being prone to diversity degeneration and
105 ply of nucleotides, and the condition of the DNA template (both in terms of sequence context and the
106 ome duplication in the absence of a pristine DNA template, but identification of the enzymes involved
107 se epimer 2, was readily incorporated into a DNA template by HIV reverse transcriptase to act as a DN
112 e mRNA transcribed from uniformly uracilated DNA templates by T7 RNAP indicated an increased frequenc
113 ing, and removal of collided RNAPII from the DNA template can be achieved via ubiquitylation-directed
114 both homopolymeric and mixed-sequence 3'-NP-DNA templates can be copied into complementary 3'-NP-DNA
115 of individual RNAP molecules transcribing a DNA template carrying tandem repeats encoding the his pa
116 based on utilising simultaneously two donor DNA templates cloned in plasmids with different antibiot
117 tion and testing of recombinant proteins and DNA templates, clustering DNA templates on a flowcell, H
120 RNA polymerase II (Pol II) in complex with a DNA template containing oxidized 5mCs, revealing specifi
122 le-base nucleotide incorporation into primed DNA templates covalently attached to the surface of a gl
124 isplacement amplification (dMDA) to purified DNA templates, cultured bacterial cells and human microb
128 A polymerase II phosphorylated at Ser-5 in a DNA template-dependent manner and can alter the global g
129 ices that achieve complex functionalities by DNA-templated design steered by structural feedback.
130 matin and, consequently, are central to many DNA template-directed processes including replication, r
133 diated through chemical modifications of the DNA template, DNA-associated proteins, and RNA-mediated
134 en polymerase II (Pol II) and a heteroduplex DNA template do not depend on general transcription fact
135 d synthesizes RNA without movement along the DNA template, drawing downstream DNA into itself in a pr
136 RNA polymerase (RNAP) is dislodged from the DNA template either at specific DNA sequences, called th
137 gp5/trx complex binds tightly to a primer-DNA template enabling the polymerization of hundreds of
138 hat this conformational switch might control DNA template engagement and release, modulating replisom
139 Our results establish an example of the DNA-templated enzymatic synthesis and evolution of an un
142 d by the binding of the nascent RNA with its DNA template exposes the nontemplate DNA strand to mutag
143 polymerase processing multiple homopolymeric DNA templates extended over 600 s and through >10,000 bo
144 nuclear factors ensure efficient binding to DNA templates, facilitating RNA polymerase II recruitmen
145 in the presence of a guide RNA and repairing DNA template flanked by homology DNA fragments to the ta
148 scription initiation factor that engages the DNA template for RNA priming and growth and disengages w
149 d and completely in vitro method to generate DNA templates for cell-free systems, bypassing the need
152 uccessfully use click chemistry to construct DNA templates for sgRNA expression and show, rather than
155 or cell-free systems, bypassing the need for DNA template generation and amplification from living ce
156 the synthesis and characterization of a new DNA-templated gold nanocluster (AuNC) of approximately 1
161 strand of the open reading frame 50 (ORF50) DNA template in the genome of Kaposi's sarcoma-associate
162 ed on an SSB-coated single-stranded circular DNA template in the presence of the beta/gamma complex a
166 tides and that RNA templates are superior to DNA templates in template-directed nonenzymatic primer-e
167 ealed for the first time that hRap1 binds to DNA templates in the absence of hTRF2 with a preference
168 with this phenotype, PPL2 replicates damaged DNA templates in vitro, including templates containing t
169 ucleotides, a pipeline of primer assembly of DNA templates, in vitro transcription by T7 RNA polymera
170 complexity more evident than in challenging DNA templates, including highly repetitive or transcribe
171 mechanism that acts specifically on episomal DNA templates independently of the nature of the cis-reg
173 rate and fidelity in the copying of a 3'-NP-DNA template into a complementary strand of 3'-NP-DNA.
174 embly technique that folds a single-stranded DNA template into a target structure by annealing it wit
175 that enables the enzyme-free translation of DNA templates into sequence-defined synthetic polymers t
176 two ligands through their influence on their DNA template is determined by a subtle interplay of DNA
178 entral step in gene expression, in which the DNA template is processively read by RNA polymerase II (
179 nucleotide specified by a single base in the DNA template is repetitively added to the nascent RNA tr
180 nucleotide specified by a single base in the DNA template is repetitively added to the nascent transc
182 ions that are present in a small fraction of DNA templates is essential for progress in several areas
185 exa Fluor 350 as the donor, a 30 bp (9.7 nm) DNA templated K21 aggregate as the bridge, and Alexa Flu
187 p contrast, the presence of 2'-5' linkage in DNA template leads to dramatic decreases in both transcr
188 raction of CCMV capsid protein with this RNA-DNA template leads to selective packaging of the RNA por
190 hat comprise nascent RNA hybridized with the DNA template, leaving the nontemplate DNA single-strande
192 structures or topological stress within the DNA template may lead to stalling of the replication for
193 ding to GA-rich regions of a single-stranded DNA template may promote non-specific amplification in E
194 er these data suggest that rNMPs embedded in DNA templates may influence reverse transcription kineti
195 osome-ends through a telomerase-independent, DNA-templated mechanism called alternative lengthening o
196 Dpo4 binding conformations and activity with DNA templates modified with the carcinogenic DNA adducts
199 RNA polymerase (RNAP) dissociation from the DNA template much more often than their concurrent disso
201 f human Pol II transcription from individual DNA templates, observed attenuation of transcription by
204 in the AFM studies: the relative success of DNA templating of polymers compared to metals; the slow
205 and transcription translocate along the same DNA template, often in opposing directions and at differ
206 in-depth analysis of T4 DNA ligase-catalyzed DNA templated oligonucleotide polymerization toward the
207 e the application of T4 DNA ligase-catalyzed DNA templated oligonucleotide polymerization toward the
208 ng platforms are based on the tailoring of a DNA template on which the recognition of the target DNA
209 inant proteins and DNA templates, clustering DNA templates on a flowcell, HiTS and protein binding wi
214 ped a method for the T4 DNA ligase-catalyzed DNA-templated polymerization of 5'-phosphorylated pentan
215 acids by using T4 DNA ligase to mediate the DNA-templated polymerization of 5'-phosphorylated trinuc
216 rogression on ultraviolet (UV) light-damaged DNA templates, possibly mediated by its ability to catal
217 l cases, fortuitous errors introduced during DNA template preparation and RNA transcription are suffi
218 detailed, step-by-step procedures, including DNA template preparation, in vitro and in vivo transcrip
219 sing xeno nucleic acid (XNA) polymerases, on DNA templates primed with DNA, RNA or XNA oligonucleotid
220 f RT polymerase activity with respect to the DNA template/primer (T/P), and consequently also inhibit
221 NA.dNTP complexes between MeFapy-dG-adducted DNA template:primer duplexes and the Y-family polymerase
226 P) is considered to exert constraints to all DNA-templated processes, including base excision repair
227 odifications of histones can mediate diverse DNA-templated processes, including gene transcription(1-
228 n (H2Bub1) has central functions in multiple DNA-templated processes, including gene transcription, D
231 osome positioning can impact essentially all DNA-templated processes, making an appreciation of the f
232 post-translational modifications that alter DNA-templated processes, such as transcription, to facil
233 123ub1) plays a multifaceted role in diverse DNA-templated processes, yet the mechanistic details by
242 mote replication fork progression on damaged DNA templates relies on its recently identified prolifer
244 nscription elongation factor that assists in DNA-templated RNA synthesis by cellular RNA polymerases
246 cherichia coli selects its "codon-preferred" DNA template(s) for synthesis of proteins with required
247 s of 50 nm in size were produced from single DNA template sequence using a simple two step procedure
248 ivity is regulated by nascent RNA sequences, DNA template sequences, and conserved transcription fact
249 olymerization and pyrophosphate release with DNA templates showed that pyrophosphate (PPi) dissociati
251 sensing mechanism relies on building target DNA-templated silver nanowires (conductive paths) across
252 ymerase advances one nucleotide space on the DNA template strand after a correct nucleotide is incorp
255 ctive center-proximal contacts stabilize the DNA template strand in the active center cleft and/or po
258 quently, a dGh/dIa site was synthesized in a DNA template strand, and standing start primer extension
259 re identified during translocation of single DNA template strands through a modified Mycobacterium sm
262 cific IgG antibody to two antigen-conjugated DNA templating strands that triggers a chemical reaction
266 rase engineering, we describe the enzymatic, DNA-templated synthesis of P-methyl and P-ethyl phNAs, a
269 cleotide supply and physical barriers in the DNA template that include naturally occurring DNA lesion
272 ccessful construction of a series of plasmid DNA templates that contain many tandem copies of one or
273 tive algorithm, the probability of selecting DNA templates that stabilize fluorescent silver clusters
274 e describe forward and reverse ratcheting of DNA templates through the alpha-hemolysin nanopore contr
276 counterbalances the natural tendency of the DNA template to condense into toroids or buckle multiple
277 pproximately 2-fold) changes in the ratio of DNA template to nuclear extract were sufficient to chang
278 ed that allowed for the attachment of single DNA templates to gold nanoparticles with a single polyme
279 r proteins that enable transcription of both DNA templates.To identify the effector proteins, we tran
282 comprising a challenging methylated GC-rich DNA template under a novel 96-well microplate format.
283 l resolution is limited by distortion of the DNA template upon Au metallization and subsequent etchin
284 vidual chromatin fibers onto their composite DNA templates using nonspecific DNA N(6)-adenine methylt
287 nteraction of nascent transcripts with their DNA template via the formation of co-transcriptional R-l
289 n and/or more than 50 ng of starting genomic DNA template was, however, detrimental to both the fract
290 n, with thermocycling and the use of a novel DNA template, we demonstrate a polymerase chain transcri
291 ry into CD34+, CD19+, and CD3+ cell subsets; DNA templates were prepared using quantitative polymeras
292 Rpa12.2 showed a lower processivity on naked DNA templates, which was even more reduced in the presen
293 /GCE that followed the shape produced by the DNA template, while the electrodeposition of NiONPs on t
294 tion of a linear or circular double-stranded DNA template with preassembled mushroom-shaped nanostruc
297 of a polymerase-bound 20,000-base-pair-long DNA template within seconds from a sub-nanogram input qu
298 oteins can be expressed directly from linear DNA templates within 90 min, eliminating the need for ad
299 ted molecular machinery would move along the DNA template without transient decondensation of observe
300 e typically transcribed from random-sequence DNA templates, yielding a highly diverse set of RNAs tha