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1 DNA and cDNA 16S rRNA gene profiling demonstrated that t
2 DNA binding correlates with nucleotide occupancy: five M
3 DNA double-strand breaks (DSB) are the most deleterious
4 DNA methylation is a major silencing mechanism of transp
5 DNA repair GAs are relatively frequent in GBC and associ
6 DNA was extracted and sequenced.
7 DNA-encoded small molecule libraries (DELs) have enabled
9 diesterase 2 (TDP2) reverses Topoisomerase 2 DNA-protein crosslinks (TOP2-DPCs) in a direct-reversal
12 -subunit origin recognition complex (ORC), a DNA replication initiator, defines the localization of t
15 the allosteric mechanism of nickel-activated DNA binding by HpNikR is driven by conformational select
16 ed at nucleotide 991, creating an additional DNA substrate for the unessential but highly conserved A
17 The nucleolytic resection of DSB-adjacent DNA is a key step in meiotic DSB repair, but this proces
19 tion in PCR-based diagnostics, high-affinity DNA aptamer generation, site-specific labeling of RNAs,
22 lations of nanofibers formed using analogous DNA approaches, gammaPNA structures appear to form bundl
23 tance (drug extrusion, drug degradation, and DNA damage repair) and using rate constants of these rea
24 esponse protein regulated in development and DNA damage 1 (REDD1) is necessary for the development of
26 n X-chromosome inactivation, imprinting, and DNA damage repair, and mutations in SMCHD1 can cause fac
27 PBRM1, BAP1 and SETD2), DNA methylation and DNA damage repair, all of which have been associated wit
29 atin remodeler-associated modifications, and DNA methylation) that contribute to relapse to cocaine,
30 on treatments that target RNA processing and DNA repair pathways simultaneously as effective cancer t
31 , we explore the transcriptional profile and DNA replication timing (RT) under mild replication stres
32 zymes responsible for regulating protein and DNA modifications are targets of current cancer therapie
33 ions between the globular domains of M/R and DNA, we observe transient interactions between DNA subst
37 ly, H. pylori-induced replication stress and DNA damage depend on the presence of co-transcriptional
38 ggesting the modulation of transcription and DNA damage that may be mediated by the action of HDAC an
42 es, there was a reduction in cell-associated DNA load, intact proviral DNA levels, and in inducible S
46 mber of studies have reported that bacterial DNA methylation has important functions beyond the roles
49 rements of full length p53 tetramers binding DNA reveal the parameters that define the stability of p
50 e-boronic acid (An-BA) probe to a biomimetic DNA scaffold and consequently, to use the unique photoph
59 factor X, or MAX for short, to bind certain DNA recognition motifs in gene promoters that regulate g
60 etion of the Trp53 tumor suppressor or Chek2 DNA damage checkpoint kinase rescued Smc5 cKO neurodevel
61 l roles in base excision repair and ATR-Chk1 DNA damage response (DDR) pathways, it remains unknown h
62 analysis was conducted using six chloroplast DNA sequences from leaf material from across the BI and
63 titor, either in a plasmid or in chromosomal DNA, containing the same binding site but with a differe
66 The Cys2His2 zinc finger is the most common DNA-binding domain expanding in metazoans since the fung
67 at small changes outside of highly conserved DNA-binding regions can lead to profound changes in prot
68 clinical assays lack patient-matched control DNA and additional analysis is needed to distinguish som
72 d thus activates the TMEM173/STING-dependent DNA sensor pathway, which results in macrophage infiltra
74 ide unprecedented insight into how different DNA sequences select distinct compositions and configura
75 human cohort data have revealed differential DNA methylation signatures in proxy tissues that are ass
80 is based on standardized recombinase-driven DNA scaffolds expressing different genes according to th
81 Shot loss leads to double-strand break (DSB) DNA damage, and the apoptotic response is exacerbated by
82 nism essential for replisome assembly during DNA replication initiation that is vulnerable to inhibit
83 with the natural A, T, G and C bases during DNA synthesis, which allows for labeling of replicating
87 argc1a promoter had a fetal origin; elevated DNA methylation was also detected in neonatal BAT and br
88 tructures, which makes accessing the encased DNA strands difficult, or chemical modification, such as
89 clease domain mutations in the gene encoding DNA polymerase epsilon (POLE) have incredibly high mutat
90 d by the idiosyncratic needs of the encoding DNA tag relegating DEL compatible chemistry to dilute aq
93 fe of Nkx3.1 reduces proliferation, enhances DNA end-labeling, and protects from DNA damage, ultimate
95 Cs) are generally characterized by excellent DNA surveillance and repair, resulting in one of the low
96 asures of mRNA expression, miRNA expression, DNA methylation, and histone acetylation from ASD and co
98 various DNA motifs are mediated by its flat DNA-binding surface, which is centered on a short loop s
100 likely helps to position Bax1 at the forked DNA allowing the nuclease domain to incise one arm of th
101 ole-genome bisulfite sequencing of cell free DNA (cfDNA) and of matched metastatic tumor biopsies fro
102 enhances DNA end-labeling, and protects from DNA damage, ultimately blocking the proneoplastic effect
103 ics of biological and physical systems, from DNA to turbulent plasmas, as well as in climbing, weavin
105 ree different gRNAs targeting HEK293 genomic DNA, resulting in a set of 55 high-confidence gRNA cleav
107 s of maternal SMCHD1 does not alter germline DNA methylation imprints pre-implantation or later in ge
110 posed sensor was successfully applied in HBV DNA detection in sera from patients without any amplific
113 ak (DSB) repair pathways in human cells, how DNA repair failures can lead to human disease, and how P
114 on even when viral load exceeded 1 x 107 HSV DNA copies, and surges in granzyme B and IFN-gamma occur
118 chanistically, 6-4PPs, but not CPDs, impeded DNA replication across the genome as revealed by microfl
120 more frequently in isolates with defects in DNA mismatch repair that confer an elevated mutation rat
122 nally, exposed fish exhibited differences in DNA methylation in selected genes, across all three gene
123 temperatures have measurable differences in DNA, RNA and protein composition that allow OGT predicti
125 e 1 (PARP-1) is a nuclear enzyme involved in DNA repair and transcription regulation, among other pro
126 ription of the MCM6 gene that is involved in DNA replication by directly binding to specific motifs w
127 t pathways controlled by (pp)pGpp, including DNA replication, transcription, nucleotide synthesis, ri
128 s in diverse biological processes, including DNA damage repair (Fanconi anemia), telomere maintenance
131 ed another mechanism wherein 5-AzadC induced DNA damage, which then resulted in enhanced occupancy of
134 from IECs increases markers of inflammation, DNA damage, and cell proliferation and increases colorec
139 posi's sarcoma-associated herpesvirus (KSHV) DNA in blood and increased antibody titres may indicate
141 air with unique DNA handles in order to link DNA origami nanostructures bearing complementary strands
143 RSE) is characterized by the capture of long DNA fragments (15-20 kb) by magnetic beads, after enzyma
144 uring neurodevelopment, but it also mediates DNA damage repair essential to proliferating neural prog
145 rchical strand-displacement reaction on meta-DNA to transfer the dynamic features of DNA into the met
147 alpha-1 antitrypsin concentrations.Methods: DNA samples from 1,693 non-Hispanic white individuals, 3
150 ed by CGAS or STING knockdown, mitochondrial DNA depletion or mitochondrial outer membrane permeabili
151 ng the way to cost-effective single-molecule DNA sequencing, capable of handling widely varying GC-bi
156 4) structures are four-stranded noncanonical DNA structures enriched at telomeres and oncogenes' prom
157 s reveal that histone modifications, but not DNA methylation, underlie exon-specific transcription of
158 s similar Dnmt3b isoforms facilitate de novo DNA methylation during embryonic development and in soma
164 WS) and Bloom Syndrome (BS) are disorders of DNA damage repair caused by biallelic disruption of the
168 Deletion of DNA-PK or PTEN, or inhibition of DNA-PK sensitized recovering BLBCs to AZD1775 by abrogat
169 This is followed by a further injection of DNA as a competitor, either in a plasmid or in chromosom
171 ion (unlooping) rates (kloop and kunloop) of DNA with sticky ends over three helical periods (100-130
173 us sequencing reads, an additional 8.9 Mb of DNA sequence was mappable, variant calling achieved a hi
175 These results define the repair pathways of DNA interstrand crosslinks caused by an endogenous and a
180 G4) is a noncanonical secondary structure of DNA or RNA which can enhance or repress gene expression,
181 s a resource to facilitate future studies of DNA demethylation in pathogenesis and the development of
187 ides a way to study the effect of defects on DNA supercoiling and the dynamics of supercoiling in mol
188 reveals they bind to and randomly diffuse on DNA, however, in the presence of UV-induced DNA lesions
190 independent of the nucleic acid type (RNA or DNA), its strandedness (single or double), and its seque
191 in controlling the formation of higher-order DNA secondary structures to regulate transcription beyon
193 study unravels a role of endogenous oxidized DNA bases and APE1 in controlling the formation of highe
195 parameters that define the stability of p53/DNA complexes, and provide insight into the pathways by
196 lasma circulating tumor human papillomavirus DNA (ctHPVDNA) is a sensitive and specific biomarker of
197 ing at poly(ADP-ribose) polymerase 1 (PARP1)-DNA complexes trapped by PARP inhibitors, thereby promot
199 neurotrophic factor (BDNF) and total percent DNA methylation of Th and Bdnf genes in the frontal cort
201 nanonucleases, able to cleave pBR322 plasmid DNA with the highest efficiency reported so far for cata
202 nucleotide was in the first coding position, DNA synthesis fidelity was similar to that observed with
204 in cell-associated DNA load, intact proviral DNA levels, and in inducible SIV reservoir in lymph node
207 ibition of an analog-sensitive CDK12 reduces DNA damage repair gene expression, but selective inhibit
212 g DNA access for transcription, replication, DNA repair, and epigenetic modification, chromatin forms
213 how that the response of a model replicative DNA polymerase to variously structured DNA is sufficient
214 e licensed by the loading of the replicative DNA helicase, Mcm2-7, in inactive double hexameric form
215 pendent cohesin removal is needed to restart DNA synthesis at stalled forks and promote survival foll
217 We show that the phosphorylation of the RNA-DNA binding protein fused in sarcoma (FUS) is higher in
218 nd on the presence of co-transcriptional RNA/DNA hybrids (R-loops) that form in infected cells during
219 nctions along with its cognate toxin Rv0059 (DNA ADP-ribosyl transferase, DarT(Mtb) ), to mediate rev
222 elling (for example, PBRM1, BAP1 and SETD2), DNA methylation and DNA damage repair, all of which have
225 plasma viremia, reduced cell-associated SIV-DNA, and preserved Th17 homeostasis, including at pre-AR
226 that transcription factors bind to specific DNA sequences using a combination of base readout and sh
229 y challenging the notion that lagging-strand DNA polymerases frequently dissociate from replisomes du
231 lusively occupies the strong double-stranded DNA (dsDNA)-binding surface on cGAS and sterically preve
232 division, FtsK translocates double-stranded DNA until both dif recombination sites are placed at mid
236 that potentially binds with single-stranded DNA (ssDNA) in a manner similar to human PC4, the protot
239 e mechanisms including the oxidative stress, DNA damage, lysosomal dysfunction, inflammatory cascade,
240 ative DNA polymerase to variously structured DNA is sufficient to predict the complex genomic behavio
241 functions to moderately enhance class-switch DNA recombination (CSR), while decreasing at higher dose
243 required for packaging of newly synthetized DNA into nucleosomes during the S phase when their expre
246 ged with transposon ends and U-shaped target DNA prior to integration (the target capture complex) an
247 RF2 instead activate an attenuated telomeric DNA damage response that lacks accompanying telomere fus
249 k by homologous recombination, 5'-terminated DNA strands must first be resected to reveal 3'-overhang
250 t a rate approximately 25 times greater than DNA sequence changes and typically have short half-lives
252 We discuss this phenomenon and propose that DNA methylation turnover might facilitate key lineage de
255 to be endoergic in aqueous solution and the DNA duplexes but slightly exoergic in the polymerase, wi
257 sequence as the relaxosome, which nicks the DNA strand destined for transfer and couples the nicked
258 rent study, we report that inhibitors of the DNA damage response kinase ATR can significantly potenti
261 Here, we report a crystal structure of the DNA-binding domain of a model ASO-binding protein PC4, i
262 sequently suggests that the knowledge of the DNA-binding properties of the proteins is in itself not
266 ies on ISG15 functional interaction with the DNA helicase RECQ1, which promotes restart of stalled re
267 duplicate only once in coordination with the DNA replication cycle and have an important role in segr
269 ee arsenic-coordinating cysteines within the DNA-binding domain, distal to the zinc-binding site.
270 e binding to the same consensus motif, their DNA-binding syntax is different, suggesting discriminato
272 report that L1 activity triggers FOA through DNA damage-driven apoptosis and the complement system of
274 l studies showed that Rad4, when tethered to DNA, could also open undamaged DNA, suggesting a 'kineti
276 he initiating steps of conjugative transfer, DNA transfer and replication (Dtr) proteins assemble at
278 rag force exerted by flow on a translocating DNA can be exploited to tune the kinetics of DNA translo
279 to evaluate the utility of circulating tumor DNA (ctDNA) genotyping, we compare trial enrollment usin
281 n tethered to DNA, could also open undamaged DNA, suggesting a 'kinetic gating' mechanism whereby les
282 e a coiled-coil heterodimer pair with unique DNA handles in order to link DNA origami nanostructures
284 MDM2 autoubiquitination and degradation upon DNA damage, whereas S429A substitution protects MDM2 fro
286 ntial to be highly mutagenic because it uses DNA polymerases, nucleases, and other enzymes that modif
288 ce the effective depth of synthesized vector DNA libraries, thereby raising the discovery cost of nov
289 yme kinetic parameters of cellular and viral DNA and RNA polymerases with respect to cellular levels
290 with a Pyk2 kinase inhibitor increased viral DNA content in keratinocytes that maintain viral episome
292 on recognition by ATL and directly visualize DNA lesion search by highly motile ATL and ATL-UvrA comp
293 we demonstrate that high-throughput in vitro DNA binding assays coupled with unbiased computational a
295 stage of human NK cell development in which DNA demethylation takes place to allow for active transc
296 onchoscopy to collect epithelial cells whose DNA methylation was measured using the Illumina 450 K pl
298 ubles the number of published syndromes with DNA methylation episignatures and, most significantly, o
299 h synthetic DNA templates and validated with DNA from two breast cancer cell-lines and two patient tu