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1 EF-Tu alternates between GTP- and GDP-bound conformation
2 EF-Tu delivers aa-tRNA to the ribosomal A site and parti
3 EF-Tu from the clinically relevant pathogen Pseudomonas
4 EF-Tu is a cytoplasmic protein but has been localized ex
5 EF-Tu is in its active conformation, the switch I loop i
6 EF-Tu is required to support this tRNase activity in vit
7 EF-Tu plays a critical role in mRNA decoding by increasi
8 EF-Tu.GTP.aa-tRNA ternary complex formation and decay ra
9 ribosomes, indicates that in all cases ~3.7 EF-Tu copies are bound on average to each translating 70
11 in-ricin loop of the 50S subunit, activating EF-Tu for GTP hydrolysis and enabling accommodation of t
12 end of accommodation corridor passage after EF-Tu release can be reengaged by EF-Tu.GTP from solutio
19 onformational changes occur in both PPHD and EF-Tu, including a >20-A movement of the EF-Tu switch I
20 single-step displacements from ribosome and EF-Tu diffusive trajectories before and after Onc112 tre
24 s P-site tRNA, RF2-dependent termination and EF-Tu-dependent decoding are largely unaffected in analo
26 lants synthesized and accumulated three anti-EF-Tu cross-reacting polypeptides of similar molecular m
28 rchitecture to translational GTPases such as EF-Tu and the selenocysteine incorporation factor SelB.
32 Our results indicate that ribosome-bound EF-Tu separates from the GAC prior to its full separatio
34 cts, and ion dependence of GTP hydrolysis by EF-Tu off and on the ribosome to dissect the reaction me
36 lection and a proofreading step, mediated by EF-Tu, which forms a ternary complex with aminoacyl(aa)-
39 d by inefficient delivery to the ribosome by EF-Tu, not slow peptide bond formation on the ribosome.
41 s suggest that overexpression of chloroplast EF-Tu can be beneficial to wheat tolerance to heat stres
42 In vivo studies revealed that V. cholerae EF-Tu is highly sensitive to oxidative protein degradati
45 n of the H66A mutation into Escherichia coli EF-Tu, whereas Ala-tRNA(Ala) and Gly-tRNA(Gly) were unaf
50 he CCA tail of the tRNA, weakens the crucial EF-Tu-tRNA interactions, which lowers tRNA binding affin
52 e resulting closure of the 30S subunit docks EF-Tu at the sarcin-ricin loop of the 50S subunit, activ
54 ical and pathological significance of a DsbA/EF-Tu association is unknown, peptides derived from the
55 was used to identify a set of sites in eEF1A/EF-Tu associated with eEF1B binding in eukaryotes and an
56 ion, eukaryotic elongation factor 1A (eEF1A; EF-Tu in bacteria) delivers aminoacylated-tRNA to the A-
60 findings demonstrate how, through evolution, EF-Tu has fine-tuned the structural and dynamic features
63 ze bacterial flagellin and elongation factor EF-Tu (and their elicitor-active epitopes flg22 and elf1
64 urface-exposed translation elongation factor EF-Tu carrying a Lys-5 trimethylation, incorporated by t
66 8 (a part of the bacterial elongation factor EF-Tu) but not chitin (a component of fungal cell walls)
67 n of a single protein, the elongation factor EF-Tu, was sufficient to rescue both the ts and bleach-s
69 tly described location of translation factor EF-Tu on the ribosome and the proposed involvement of h1
70 and can phosphorylate the translation factor EF-Tu, suggesting a persistence mechanism via cell stasi
72 roplast protein synthesis elongation factor, EF-Tu, displays reduced thermal aggregation of leaf prot
74 ly conserved translation elongation factors, EF-Tu in bacteria (known as eEF1A in eukaryotes) and EF-
75 e tRNA mutants with different affinities for EF-Tu to demonstrate that proofreading of aa-tRNAs occur
76 , mutant tRNAs with differing affinities for EF-Tu were assayed for decoding on Escherichia coli ribo
77 biotinyl-lysine, had a very low affinity for EF-Tu:GTP, while the small unnatural AAs on the same tRN
79 ve previously identified the gene, eftM (for EF-Tu-modifying enzyme), responsible for this modificati
80 ons, combined with copy number estimates for EF-Tu and ribosomes, indicates that in all cases ~3.7 EF
81 the guanosine nucleotide exchange factor for EF-Tu, directly accelerates both the formation and disso
88 rary to current models--the reaction in free EF-Tu follows a pathway that does not involve the critic
89 with the velocity of tRNA dissociation from EF-Tu-GDP on the ribosome, which ensure uniform incorpor
93 nts that mediate the release of aa-tRNA from EF-Tu and EF-Tu from the ribosome after GTP hydrolysis.
95 strate that surface-associated M. genitalium EF-Tu (EF-Tu(Mg)), in spite of sharing 96% identity with
98 ose that EF-Ts promotes the formation of GTP.EF-Tu.tRNA ternary complexes, thereby accelerating subst
99 rvations suggest that the toxin remodels GTP.EF-Tu.aa-tRNA complexes to free the 3'-end of aa-tRNA fo
100 the toxin domain onto previously solved GTP.EF-Tu.aa-tRNA structures reveals potential steric clashe
101 on of the genetic code depends on the GTPase EF-Tu delivering correctly charged aminoacyl-tRNAs to th
102 lus adhesion and penetration protein [Hap]), EF-Tu, LDH, PD, and P6 exhibited interactions with lamin
103 phases could be made dominant by using high EF-Tu concentrations and/or lower reaction temperature,
105 kinetic model of accommodation and show how EF-Tu can contribute to efficient and accurate proofread
106 Most bacterial trGTPases, including IF2, EF-Tu, EF-G and RF3, play well-known roles in translatio
108 prior to the major conformational change in EF-Tu that follows GTP hydrolysis, or irreversible disso
111 ations reveal that conformational changes in EF-Tu coordinate the rate-limiting passage of aa-tRNA th
112 the toxin induces conformational changes in EF-Tu, displacing a beta-hairpin loop that forms a criti
114 tor (EF) Ts-catalyzed nucleotide exchange in EF-Tu in bacteria and particularly in clinically relevan
120 stress-responsive toxin HipA, which inhibits EF-Tu, also rescues bacterial growth and protein folding
121 stal structure of PPHD complexed with intact EF-Tu reveals that major conformational changes occur in
122 characterization of two different mesophilic EF-Tu orthologs, one from Escherichia coli, a bacterium
123 s corresponding to this region of EF-Tu(Mp) (EF-Tu(Mp) 340-358) blocked both recombinant EF-Tu(Mp) an
125 le-molecule tracking of MreB, EF-Tu and MreB-EF-Tu pairs reveals intriguing localization-dependent he
128 The toxin binds exclusively to domain 2 of EF-Tu, partially overlapping the site that interacts wit
131 ol, constant viability count, the absence of EF-Tu and SecA in the culture medium, and the lack of ef
132 le placement of the first 5-6 amino acids of EF-Tu into a conserved peptide-binding channel in EftM.
133 ing to identify the essential amino acids of EF-Tu(Mp) that mediate Fn interactions by generating mod
135 ion impairs the essential GTPase activity of EF-Tu, thereby preventing its release from the ribosome.
136 Notably, EF-Ts attenuates the affinity of EF-Tu for GTP and destabilizes ternary complex in the pr
139 ons, we studied the conformational change of EF-Tu from the guanosine triphosphate to guanine diphosp
143 e switch 1 loop of EF-Tu allows domain D1 of EF-Tu to rotate relative to domains D2 and D3 and leads
144 employing fluorescent labeled derivatives of EF-Tu, tRNA, and the ribosome to measure changes in eith
145 -molecule tracking study of the diffusion of EF-Tu in E. coli growing with doubling times in the rang
148 tively little is known about the dynamics of EF-Tu interaction with either the ribosome or aa-tRNA.
151 Here, we provide evidence that switch I of EF-Tu facilitates EF-Tu's involvement during aa-tRNA sel
155 ting the hypothesis that increased levels of EF-Tu will lead to a non-specific protection of leaf pro
156 ween the nucleotide and the switch 1 loop of EF-Tu allows domain D1 of EF-Tu to rotate relative to do
158 ween the sarcin-ricin loop and the P loop of EF-Tu, and between the effector loop of EF-Tu and a cons
159 ivo temperature dependence of methylation of EF-Tu, preincubation of EftM at 37 degrees C abolished m
163 uce the energetics of the GTPase reaction of EF-Tu with and without the ribosome and with several key
164 ion, the ribosome induces a rearrangement of EF-Tu that renders GTP hydrolysis sensitive to mutations
165 tic peptides corresponding to this region of EF-Tu(Mp) (EF-Tu(Mp) 340-358) blocked both recombinant E
168 es in the conserved GTPase switch regions of EF-Tu that trigger hydrolysis of GTP, along with key int
169 of EF-Ts was paralleled by up-regulation of EF-Tu and induction of genes involved in mitochondrial b
171 g in bacteria, highlight the pivotal role of EF-Tu for fast and accurate protein synthesis, and illus
173 ing activity, reinforcing the specificity of EF-Tu-Fn interactions as mediators of microbial coloniza
174 we have determined the crystal structure of EF-Tu and aminoacyl-tRNA bound to the ribosome with a GT
175 as been as laboratory tools for the study of EF-Tu and the ribosome, as their poor pharmacokinetic pr
176 While the amino acids on the surface of EF-Tu that contact aminoacyl-tRNA (aa-tRNA) are highly c
178 ith eftM and conclude that trimethylation of EF-Tu by EftM does not impact EF-Tu's canonical function
180 chaperones and proteases acting directly on EF-Tu to modulate the intracellular rate of protein synt
182 Our data suggest that GTP hydrolysis on EF-Tu is controlled through a hydrophobic gate mechanism
186 proved by modulating expression of plastidal EF-Tu and/or by selection of genotypes with increased en
187 we determined that binding of M. pneumoniae EF-Tu to Fn is primarily mediated by the EF-Tu carboxyl
188 the classically defined cytoplasmic protein EF-Tu relative to cellular function, compartmentalizatio
191 sites, in contrast with the related receptor EF-Tu receptor that can be rendered nonfunctional by dis
193 (EF-Tu(Mp) 340-358) blocked both recombinant EF-Tu(Mp) and radiolabeled M. pneumoniae cell binding to
194 eractions by generating modified recombinant EF-Tu proteins with amino acid changes corresponding to
195 ing the genetic code rested on reengineering EF-Tu to relax its quality-control function and permit S
197 d Sec incorporation into hAGT; the resulting EF-Tu variants contained highly conserved amino acid cha
198 ese pathways correspond to either reversible EF-Tu.GDP dissociation from the ribosome prior to the ma
200 eta-galactosidase, gamma-secretase, ribosome-EF-Tu complex, 20S proteasome and RNA polymerase III, we
201 lows down the rearrangements in the ribosome-EF-Tu-GDP-Pi-Lys-tRNA(Lys) complex following GTP hydroly
203 ftM cannot methylate the isolated N-terminal EF-Tu peptide and that binding-induced conformational ch
206 the results also support the hypothesis that EF-Tu contributes to heat tolerance by acting as a molec
207 ion in the absence of Hsp33, indicating that EF-Tu is a vital chaperone substrate of Hsp33 in V. chol
208 ll separation from aa-tRNA, and suggest that EF-Tu.GDP dissociates from the ribosome by two different
209 -tRNA is not essential for survival, and the EF-Tu barrier against misacylated aa-tRNA is not absolut
212 sults support the following conclusions: the EF-Tu ternary complex binds to the A-site whenever it is
213 iation is unknown, peptides derived from the EF-Tu switch I region bound to AbDsbA with submicromolar
218 te has peptidyl-tRNA; and association of the EF-Tu ternary complex is prevented, simply by steric hin
220 he nucleotide into the binding pocket of the EF-Tu.EF-Ts binary complex, followed by displacement of
221 mulations to investigate the dynamics of the EF-Tu.guanosine 5'-triphosphate.aa-tRNA(Cys) complex and
222 s in the elucidation of the structure of the EF-Tu/ribosome complex provide the rare opportunity of g
223 structure of this complex revealed that the EF-Tu switch I region binds to the non-catalytic surface
224 Further characterization confirmed that the EF-Tu- and DsbB-derived peptides bind at two distinct si
226 odon loop through h44 and protein S12 to the EF-Tu-binding CCA end of aa-tRNA, proposed to signal cog
228 body had essentially the same affinities to EF-Tu:GTP as natural AAs on this tRNA, but still 2-fold
230 ing on the observation that EftM can bind to EF-Tu lacking its N-terminal peptide (encompassing the L
231 that balance the strength of tRNA binding to EF-Tu-GTP with the velocity of tRNA dissociation from EF
233 tional change when EF-Tu.GTP is converted to EF-Tu.GDP, forms part of an aminoacyl(aa)-tRNA.EF-Tu.GTP
236 t predicts the DeltaG degrees of any tRNA to EF-Tu using the sequence of its three T-stem base pairs.
237 ave a characteristic DeltaG degrees value to EF-Tu, but different T-stem sequences are used to achiev
238 number of aa-tRNAs that bind more weakly to EF-Tu than expected and thus are candidates for acting a
241 odulating GTP hydrolysis by aminoacyl-tRNA * EF-Tu * GTP ternary complexes during the elongation phas
243 -Tu.GDP, forms part of an aminoacyl(aa)-tRNA.EF-Tu.GTP ternary complex (TC) that accelerates the bind
244 criminating against these misacylated tRNAS, EF-Tu plays a direct role in preventing misincorporation
245 that surface-associated M. genitalium EF-Tu (EF-Tu(Mg)), in spite of sharing 96% identity with EF-Tu(
246 ocalized M. pneumoniae elongation factor Tu (EF-Tu(Mp)) mediates binding to the extracellular matrix
247 al MAMPs flagellin and elongation factor Tu (EF-Tu) activate distinct, phylogenetically related cell
249 uential association of elongation factor Tu (EF-Tu) and elongation factor G (EF-G) with the ribosome
251 n ternary complex with elongation factor Tu (EF-Tu) and GTP and then, again, in a proofreading step a
257 e translational GTPase elongation factor Tu (EF-Tu) delivers a transfer RNA (tRNA) to the ribosome.
259 o Thermus thermophilus elongation factor Tu (EF-Tu) revealed that much of the specificity for tRNA oc
260 ly conserved His-66 of elongation factor Tu (EF-Tu) stacks on the side chain of the esterified Phe of
261 lar PGH motif found in elongation factor Tu (EF-Tu) that is required for GTP hydrolysis on interactio
262 diA-CT(EC869) binds to elongation factor Tu (EF-Tu) with high affinity and this interaction is critic
263 lved to bind bacterial elongation factor Tu (EF-Tu) with uniform affinities, mutant tRNAs with differ
264 GTP hydrolysis by elongation factor Tu (EF-Tu), a translational GTPase that delivers aminoacyl-t
265 lex (TC) consisting of elongation factor Tu (EF-Tu), aminoacyl tRNA and GTP, and locks the otherwise
268 by its poor binding to elongation factor Tu (EF-Tu), the yield of incorporation into peptide is addit
269 se) factors, including elongation factor Tu (EF-Tu), which delivers aminoacyl-transfer RNAs (tRNAs) t
270 red to the ribosome by elongation factor Tu (EF-Tu), which hydrolyzes guanosine triphosphate (GTP) an
271 for production of the elongation factor Tu (EF-Tu)-targeting 29-member thiazolyl peptide GE37468 fro
279 sociated M. pneumoniae elongation factor Tu (EF-Tu, also called MPN665) serves as a fibronectin (Fn)-
280 specifically binds to elongation factor-Tu (EF-Tu) and targets it for degradation by the protease Lo
281 ing protein synthesis, elongation factor-Tu (EF-Tu) bound to GTP chaperones the entry of aminoacyl-tR
282 ase EftM trimethylates elongation factor-Tu (EF-Tu) on lysine 5 to form a post-translational modifica
283 otein (RasGAP) and the elongation factor-Tu (EF-Tu) with a 1 W mechanism is still valid for the 2 W p
284 of Onc112 on ribosome, elongation factor-Tu (EF-Tu), and DNA spatial distributions and diffusive prop
287 dentified elongation factor thermo-unstable (EF-Tu), l-lactate dehydrogenase (LDH), protein D (PD), a
288 (aaRSs), elongation factor thermo-unstable (EF-Tu), the ribosome, and d-aminoacyl-tRNA deacylase (DT
289 mation most closely resembles that seen upon EF-Tu-GTP-aminoacyl-tRNA binding to the 70S ribosome.
291 undergoes a major conformational change when EF-Tu.GTP is converted to EF-Tu.GDP, forms part of an am
294 nto yeast tRNA Phe resulted in chimeras with EF-Tu binding affinities similar to those for the donor
295 that aminoacyl-tRNAs in ternary complex with EF-Tu*GTP can readily dissociate and rebind to aminoacyl
296 ilization of the EF-Ts variants complex with EF-Tu, in agreement with the dramatic steady-state level
297 First, aa-tRNAs in ternary complex with EF-Tu.GDP are selected in a step where the accuracy incr
298 tal structure of the ribosome complexed with EF-Tu and aminoacyl-tRNA, refined to 3.6 angstrom resolu
300 ctron microscopy map of the aminoacyl-tRNA x EF-Tu x GDP x kirromycin-bound Escherichia coli ribosome