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1 ERV activation was accompanied by significant hippocampu
2 ERV reactivation in Tlr7 (-/-) mice was comparable in th
3 ERV reactivation is accompanied by an epigenetic shift f
4 ERV RNA and Xist A-repeat bind the RRM domains of Spen i
5 ERV-DC sequence diversity was present across wild and do
6 ERV-DC14 was detected at a high frequency in European wi
7 ERVs are commonly found in two forms, the full-length pr
8 ERVs are epigenetically silenced during development, yet
9 ERVs are molecular remnants of ancient retroviruses and
10 ERVs are provirus insertions in germline cells that are
11 ERVs make up 8 to 10% of human and mouse genomes and ran
13 the antiretroviral soluble factor Refrex-1 (ERV-DC7 and ERV-DC16), or can generate recombinant felin
15 ion-defective human endogenous retrovirus 9 (ERV-9) and thousands of copies of its solitary long term
17 eveal that hA3G can potently restrict active ERV in vivo and suggest that expansion of the APOBEC3 lo
20 nd performing simple correlations across all ERV lineages, we show that when ERVs lose the env gene t
22 ngly, deletion or epigenetic silencing of an ERV-derived enhancer suppresses cell growth by inducing
26 plication competent (ERV-DC10, ERV-DC18, and ERV-DC14), produce the antiretroviral soluble factor Ref
27 roviral soluble factor Refrex-1 (ERV-DC7 and ERV-DC16), or can generate recombinant feline leukemia v
28 monstrate preferential gene derepression and ERV reactivation in AML with chromosomal deletions, prov
30 on and interaction properties of the p24 and ERV-29 cargo adaptors, as well as their role in cellulas
31 However, it is unknown how broadly RBPs and ERV transcripts directly interact to provide a posttrans
34 sulfide intermediate between thioredoxin and ERV domains was highlighted by rapid reaction studies in
36 nous retrovirus (ERV) transcription and anti-ERV antibody reactivity are implicated in lupus pathogen
39 we characterized a family of class II avian ERVs, "TgERV-F," that acquired a mammalian gammaretrovir
40 ity have revealed novel interactions between ERVs and their hosts, with the potential to cause or con
44 ted in an elevated transcript level of bound ERVs of the HERV-K and -H families, as well as increased
46 rly 5% of the genome assembly is occupied by ERV-derived sequences, a quantity comparable to findings
47 pt that some of the gene products encoded by ERVs and other endogenous viral elements may offer to th
48 genous retroviruses (ERVs) of domestic cats (ERV-DCs) are one of the youngest feline ERV groups in do
50 t-transcriptionally silence coding-competent ERVs, while 18 nt tRFs specifically interfere with rever
51 us); some members are replication competent (ERV-DC10, ERV-DC18, and ERV-DC14), produce the antiretro
53 tern of retroviral evolution and contrasting ERV diversity with known retroviral diversity, our study
55 ion of dedicated host mechanisms controlling ERV activity have revealed novel interactions between ER
56 members are replication competent (ERV-DC10, ERV-DC18, and ERV-DC14), produce the antiretroviral solu
62 revents aberrant expression of ERV elements (ERVs) has been functionally co-opted via a stress-induce
63 le elements, endogenous retroviral elements (ERVs) containing long terminal repeats (LTRs), are silen
65 ats (ERV-DCs) are one of the youngest feline ERV groups in domestic cats (Felis silvestris catus); so
66 g in vitro and polymorphic ERVs, older fixed ERVs) allowed us to disentangle integration vs. fixation
68 e we studied 2 independent murine models for ERV activation: muMT strain (lacking B cells and antibod
69 sues, suggesting that tissues permissive for ERV activity gain access to an otherwise silenced source
70 eloped a pipeline to screen full genomes for ERVs, and using this pipeline, we have located over 800
71 retroviruses and discusses the potential for ERVs to reveal virus-host interactions on evolutionary t
74 al BLT-1, low levels of minimally functional ERV-1, and inversed coexpression when compared to neutro
75 T mice and ICVI-STZ mice induced hippocampal ERV activation, as shown by increased gene and protein e
76 1 was present in European wildcats; however, ERV-DC16, but not ERV-DC7, was unfixed in European wildc
79 LTR, although members of one group of human ERVs (HERVs), HERV-K, were recently active with members
84 ant H3.3 is enriched at class I and class II ERVs, notably those of the early transposon (ETn)/MusD f
87 rphism than X-MLVs, and these differences in ERV acquisition and fixation are linked to subspecies-sp
91 pobec3 (-/-) Tlr7 (-/-) mice, and infectious ERV virions could not be amplified through coculture wit
96 onstrate that ZFP809 is required to initiate ERV silencing during embryonic development but becomes l
100 en merged to the Repbase collection of known ERV/long terminal repeat (LTR) elements to annotate the
101 f the methodology used here to analyze large ERV datasets and improve understanding of retroviral evo
103 ls and birds were screened, and epsilon-like ERV fragments were found in all primate and tree shrew g
105 ver 800 fragments of endogenous epsilon-like ERVs in the genomes of all major groups of primates, inc
106 y few mammals are known to have epsilon-like ERVs; however, we have identified over 800 fragments of
107 al history of a specific retrovirus lineage (ERV-Fc) that disseminated widely between ~33 and ~15 mil
110 s, suggesting that loss of KRAB-ZFP-mediated ERV control may contribute to human lupus pathogenesis.
117 ubspecies origins of laboratory mouse XP-MLV ERVs and their coevolutionary trajectory with their XPR1
121 urally occurring thymic lymphoma and a mouse ERV, suggesting a common mechanism of virus inactivation
122 imultaneous epigenetic silencing of multiple ERVs, we demonstrate that ERV deregulation directly alte
123 ion in the env genes of both FeLV and murine ERV provides a common mechanism shared by endogenous and
127 ifferent cat lineages and generated numerous ERVs in the host genome, some of which remain replicatio
128 he mechanistic level, Rif1 directly occupies ERVs and is required for repressive histone mark H3K9me3
129 nt greater appreciation of the complexity of ERV biology and the identification of dedicated host mec
132 transcribed from many of the 4000 copies of ERV-9 LTR retrotransposons acted by a similar cis mechan
133 obal knockdown or locus-specific deletion of ERV-9 lncRNAs in human erythroblasts carrying approximat
135 m recent studies cataloging the diversity of ERV LTRs acting as important transcriptional regulatory
136 hat normally prevents aberrant expression of ERV elements (ERVs) has been functionally co-opted via a
138 formation decreases rapidly as a function of ERV age and that an age dependent model of solo-LTR form
139 diomyocytes in vitro to discover hundreds of ERV transcripts from the primate-specific MER41 family,
141 counteracted LPS and TNF-alpha induction of ERV-1 overexpression and endogenous diabetic overexpress
146 ed to provide for the continued restraint of ERV in the human genome.IMPORTANCE Although APOBEC3 prot
147 transcribed from the LTR retrotransposons of ERV-9 human endogenous retrovirus activated transcriptio
148 nes protein (STING), 2 downstream sensors of ERV activation, provided confirmation of ERV impact.
149 that intronic RNAs arising from U3 sLTRs of ERV-9 were expressed as both sense (S) and antisense (AS
151 ethylation and transcriptional activation of ERVs, including CpG-rich IAP (intracisternal A particle)
153 te proviruses from the three main classes of ERVs, which were further resolved into 13 major families
154 reciated role for immunity in the control of ERVs and provide a potential mechanistic link between im
158 tion, we examine whether the distribution of ERVs can be explained by host factors predicted to influ
160 e diversity, we uncover a great diversity of ERVs, indicating that retroviral sequences are much more
163 solo-LTR formation describes the history of ERVs more accurately than the commonly used exponential
164 an unexpectedly strong functional impact of ERVs in disrupting gene transcription at a distance and
168 ranslocation (TET) enzymes at LTR regions of ERVs, because vitamin C acts as a cofactor for TET prote
170 any previously uncharacterized repressors of ERVs, and defined an essential role of Rif1 in the epige
172 KRAB-ZFP) family, initiates the silencing of ERVs in a sequence-specific manner via recruitment of he
175 sibility that a genome-wide transposition of ERVs rewired germline gene expression in a species-speci
179 tionary ages (young in vitro and polymorphic ERVs, older fixed ERVs) allowed us to disentangle integr
180 contributions from xenotropic and polytropic ERVs differentially alter the regions responsible for re
182 peculate how this interaction could preserve ERV/host chimeric gene products affecting female fertili
183 nts inversely correlated with three putative ERV-suppressing KRAB-ZFPs, suggesting that loss of KRAB-
185 ematically identified RBPs that may regulate ERV function and demonstrate a role for RBM4 in controll
186 candidates for an RBP negatively regulating ERV expression was RNA-binding motif protein 4 (RBM4).
187 LTR sequences derived from distantly related ERVs have been exapted as regulatory sequences for many
190 activates a subset of endogenous retroviral (ERV) elements in mouse embryonic stem cells, with gain o
191 ds to derepression of endogenous retroviral (ERV) elements, unmasking this cellular source of "self"
192 ation results from an endogenous retroviral (ERV) insertion upstream of the Ptf1a gene resulting in i
193 tic signal from large endogenous retrovirus (ERV) datasets by collapsing information to facilitate br
194 Here we identify six endogenous retrovirus (ERV) families with AML-associated enhancer chromatin sig
195 on of hypermethylated endogenous retrovirus (ERV) genes accompanies the response and ERV overexpressi
196 e mapped thousands of endogenous retrovirus (ERV) germline integrants in highly divergent, previously
199 biallelic and include endogenous retrovirus (ERV) targets, the rest show monoallelic binding based ei
201 ctionally transcribed endogenous retrovirus (ERV) transcripts, increased cytosolic dsRNA, and activat
202 ficantly derepressing endogenous retrovirus (ERV)3-1, with promoter demethylation, enhanced chromatin
206 etrotransposons, or endogenous retroviruses (ERV), account for most novel insertions and are expresse
215 Here, we show that endogenous retroviruses (ERVs) influence species-specific germline transcriptomes
221 viruses have become endogenous retroviruses (ERVs) on several occasions, integrating into germ line c
224 ting in the form of endogenous retroviruses (ERVs) that account for nearly one-tenth of the mouse and
225 us MLVs derive from endogenous retroviruses (ERVs) that were acquired by the wild mouse progenitors o
227 In the case of endogenous retroviruses (ERVs), a TE subclass, experimental interrogation is cons
228 The life cycle of endogenous retroviruses (ERVs), also called long terminal repeat (LTR) retrotrans
230 al tracts, and also endogenous retroviruses (ERVs), comprising a substantial fraction of the mammalia
231 elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian geno
233 siderable number of endogenous retroviruses (ERVs), relics of ancestral infectious retroviruses, whos
237 ng the germ line as endogenous retroviruses (ERVs), where they lose their infectivity over time but c
245 REs (a total of 111 endogenous retroviruses [ERVs] and 488 solo long terminal repeats [sLTRs]) within
246 lized to a small interval adjacent to the Sd ERV insertion overlapping a known Ptf1a enhancer region,
248 tivity and precision for detecting simulated ERV and other TE insertions derived from real polymorphi
251 isease, there is mounting evidence that some ERVs have become integral components of normal host deve
252 rrying a single copy of the primate-specific ERV-9 LTR in the 100 kb human beta-globin gene locus.
253 in other tissues shows that species-specific ERV enhancer activity is generally restricted to hypomet
254 mouse viruses derive directly from specific ERVs or arise by recombination between different ERVs.
255 f innate immunity, and that lineage-specific ERVs have dispersed numerous IFN-inducible enhancers ind
256 to-meiosis transition in male mice, specific ERVs function as active enhancers to drive germline gene
262 encing of multiple ERVs, we demonstrate that ERV deregulation directly alters the expression of adjac
270 contrast, the proximal CXXC disulfide in the ERV (essential for respiration and vegetative growth) do
271 ecific single nucleotide polymorphism in the ERV-DC14 env gene, which results in a replication-defect
273 ults demonstrate the unique potential of the ERV fossil record for studying the processes of viral sp
274 d mouse, and indicate that the effect of the ERV insertion on Ptf1a expression may be mediated by inc
276 As acted in cis to stabilize assembly of the ERV-9 LTR enhancer complex and facilitate long-range LTR
277 ts carrying approximately 4000 copies of the ERV-9 LTRs and in transgenic mouse erythroblasts carryin
278 CRISPR-Cas9 deletion of a subset of these ERV elements in the human genome impaired expression of
280 bryos and embryonic stem cells (ESCs), these ERVs remain silenced when Np95 is deleted alone or in co
282 histone modifications) in +/-32 kb of these ERVs' integration sites and in control regions, and anal
288 e that recruitment of DAXX, H3.3 and KAP1 to ERVs is co-dependent and occurs upstream of ESET, linkin
290 for Toll-like receptor 7 (TLR7), transcribed ERV loci can recombine and generate infectious ERV.
294 s across all ERV lineages, we show that when ERVs lose the env gene their proliferation within that g
296 nfections and certain cancers, coincide with ERV expression, suggesting that transcriptional reawaken
299 ach P-MLV has an E-MLV backbone with P- or X-ERV replacements that together cover 100% of the recombi
300 ow close relationships to a small xenotropic ERV subgroup largely confined to the inbred mouse Y chro