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2 and DNA gap repair typically involve growing Escherichia coli (E coli) containing plasmids, followed
3 ofiles of sites of unsaturation of lipids in Escherichia coli (E. coli) and Acinetobacter baumannii (
4 vestigated the inactivation of Gram-negative Escherichia coli (E. coli) and Gram-positive Enterococcu
5 sed using the inhibition zone method against Escherichia coli (E. coli) and Staphylococcus aureus (S.
6 an in vivo assessment platform comprised of Escherichia coli (E. coli) and transgenic zebrafish embr
7 demonstrate rapid, sensitive and label-free Escherichia coli (E. coli) detection utilizing interfero
8 IEF-MS/MS identified 711 proteoforms from an Escherichia coli (E. coli) proteome consuming only nanog
11 Interacting Protein (DIP) Human, Drosophila, Escherichia coli (E. coli), and Caenorhabditis elegans (
13 modelling (FBA, pFBA, FVA and MOMA) and the Escherichia coli (E.coli) core stoichiometric model to i
15 ith the diarrheal pathogen enteroaggregative Escherichia coli (EAEC) is associated with growth falter
21 Recent efforts to develop an enterotoxigenic Escherichia coli (ETEC) vaccine have focused on the anti
24 -R assay in Klebsiella pneumoniae (n = 236), Escherichia coli (n = 22), Enterobacter cloacae (n = 23)
28 ssociated outbreaks of Shiga toxin-producing Escherichia coli (STEC) were first identified in 1991.
29 es are caused by Gram-negative uropathogenic Escherichia coli (UPEC) or Gram-positive Enterococcus fa
30 remove established biofilms of uropathogenic Escherichia coli (UPEC), Pseudomonas aeruginosa, and Sta
33 ectron microscopy (cryo-EM) structure of the Escherichia coli 50S subunit at an average resolution of
35 nesis in tobacco correlated with assembly in Escherichia coli advocating use of this bacterium to pre
36 munized camel and purified the antibody from Escherichia coli after refolding it from inclusion bodie
37 interest in the structure and specificity of Escherichia coli AlkB and its homologs, difficulties in
38 oea associated with typical enteropathogenic Escherichia coli among children aged 6-11 months was 2.0
39 usters between 15 diverse species (including Escherichia coli and 12 rhizobia) help identify the barr
40 proposed SEF-AuNI sensors for model bacteria Escherichia coli and Bacillus subtilis can go to 0.5119
41 esent BEs that cause C-to-A transversions in Escherichia coli and C-to-G transversions in mammalian c
42 psis thaliana, Schizosaccharomyces pombe and Escherichia coli and how it can be used to study RBP dyn
43 Using tREX, we test 243 candidate tRNAs in Escherichia coli and identify 71 orthogonal tRNAs, cover
45 stinct plasmids in communities consisting of Escherichia coli and Klebsiella pneumoniae once antibiot
49 eria strains (including carbapenem-resistant Escherichia coli and methicillin-resistant Staphylococcu
50 nce-specific killing of carbapenem-resistant Escherichia coli and methicillin-resistant Staphylococcu
51 ic model of the fatty acid synthase (FAS) of Escherichia coli and paired that model with a fully reco
52 rs of the family, the transporters AmtB from Escherichia coli and Rh50 from Nitrosomonas europaea.
53 d BSA [AcBSA], zymosan, mannan, and LPS from Escherichia coli and Salmonella as well as to the monosa
57 factors and their target genes in pathogenic Escherichia coli and Salmonella revealed using chromatin
58 gle-cell lag times of populations of starved Escherichia coli and show that population growth after s
61 wo live bacterial strains: the Gram-negative Escherichia coli and the Gram-positive Bacillus subtilis
62 hese proteins were produced recombinantly in Escherichia coli and used as antigens in phage display s
63 n of the sensor surface with polyclonal anti-Escherichia coli antibody allow to obtain high detection
65 positive Bacillus subtilis and Gram-negative Escherichia coli as model organisms to monitor bacterial
67 tenot et al. now show that Fur purified from Escherichia coli binds an all-Cys-coordinated [2Fe-2S] c
70 demonstrated Gram-negative activity against Escherichia coli BW25113, which is the first reported fo
71 dly, myristoylation efficiency of MA(NOS) in Escherichia coli by co-expressed mammalian NMT was reduc
72 in diameter) in the industrial microorganism Escherichia coli by expressing a set of carboxysome prot
73 on with the enteric pathogen enterotoxigenic Escherichia coli by maternal natural IgG antibodies agai
74 at its depletion attenuates the virulence of Escherichia coli by reducing levels of LPS and outer mem
78 ation factor antigen I (CFA/I) fimbriae from Escherichia coli can inhibit autoimmune diseases in muri
82 cally active recombinant hGFAT2 (rhGFAT2) in Escherichia coli cells fused or not to a HisTag at the C
84 m of genetically modified Rosetta-gami B DE3 Escherichia coli cells, facilitating high-yield producti
85 ngle-cell measurements, we find that in live Escherichia coli cells, Zur's unbinding rate from DNA is
90 microscopy (cryo-EM) structures of an intact Escherichia coli class-II CAP-dependent transcription ac
91 ined high-resolution structures of wild-type Escherichia coli ClpAP undergoing active substrate unfol
92 to three published examples of multi-strain Escherichia coli communities with increasing complexity:
95 'gold-standard' is represented by infecting Escherichia coli cultures, followed by precipitation wit
98 gulation of gene expression by small RNAs in Escherichia coli depends on RNA binding proteins Hfq and
101 hering of a protein of interest (POI) to the Escherichia coli DNA adenine methyltransferase (Dam).
102 entapeptide motif toward the beta subunit of Escherichia coli DNA polymerase III holoenzyme by mutati
104 We present the NMR solution structure for Escherichia coli DolP, which is composed of two BON doma
105 otypic multidrug (Mdr) transporter MdfA from Escherichia coli efflux chemically- dissimilar substrate
106 These observations were analogous to how Escherichia coli encountering cell stress and nutrient d
107 To address these challenges, we show that Escherichia coli Endonuclease V (eEndoV), an inosine-cle
109 ter-membrane porin (omp)-deficient strain of Escherichia coli expressing heterologous VcChiP could gr
114 prisingly, recent single-cell experiments in Escherichia coli flagellar synthesis showed that flagell
117 no acid sequence identity, were expressed in Escherichia coli Functional characterization of the puri
120 fied evolutionarily conserved rare codons in Escherichia coli genes and associated such codons with c
123 he authors describe an elegant strategy that Escherichia coli has evolved to minimize metabolic stres
124 ol-Pal components to the cytokinetic ring in Escherichia coli has led to the proposal that the primar
125 ere, we present the crystal structure of the Escherichia coli Hfq Core bound to a 30 bp DNA, containi
126 itro impair P2 OLD-mediated killing of recBC-Escherichia coli hosts, indicating that both the ATPase
127 haride (LPS) and the Gram-negative bacterium Escherichia coli However, the physiological roles of TCP
128 microfluidic device to study thermotaxis of Escherichia coli in a broad range of thermal gradients w
129 tress, and contributes to gene expression in Escherichia coli In addition, Q8 was proposed to confer
130 th the prevalence of ciprofloxacin-resistant Escherichia coli in cattle and to determine if removal o
131 In 2015, the mcr-1 gene was discovered in Escherichia coli in domestic swine in China that conferr
132 ull-length human FMRP, FXR1P, and FXR2P from Escherichia coli in high yields, free of protein and nuc
141 ned priority AMR phenotypes and genotypes of Escherichia coli isolated from the gastrointestinal trac
144 g Synechococcus elongatus with heterotrophic Escherichia coli K-12, Escherichia coli W, Yarrowia lipo
145 zed 48 RIBO-Seq samples from nine studies of Escherichia coli K12 grown in lysogeny broth medium and
148 mon alkylating agents to growing cultures of Escherichia coli leads to the accumulation of several ad
149 ssing three enzymes (almA, xylE, p450cam) in Escherichia coli led to degradation of 60-99% of target
150 necrosis factor-alpha (TNF-alpha), IL-1beta, Escherichia coli lipopolysaccharide (Ec-LPS) and Porphyr
153 ous crystallographic studies have shown that Escherichia coli McrB uses a base-flipping mechanism to
154 Here we determine cryo-EM structures of Escherichia coli MlaFEDB in an apo state and bound to ph
155 ction is favored for C. crescentus MreB over Escherichia coli MreB because of a closer match in the d
156 s in the translation initiation step of many Escherichia coli mRNAs, particularly those with weak Shi
157 ct substrate is especially difficult for the Escherichia coli Nudix hydrolase RppH, which triggers 5'
161 , breakpoints have been established only for Escherichia coli or Enterobacterales per the Clinical an
162 ally in classical bacteriophages that infect Escherichia coli or Salmonella, yet, less is known about
163 cal ligation and puncture or bacteremia with Escherichia coli or Streptococcus pneumoniae infection).
164 caecal ligation and puncture or infection by Escherichia coli or Streptococcus pneumoniae) and endoto
166 ve peptidoglycan precursors and fragments by Escherichia coli PBP1B, allowing us to (a) identify reco
167 19)F-(19)F nuclear Overhauser effects in the Escherichia coli peptidyl-prolyl cis/trans-isomerase B f
168 erminal domain is toxic when targeted to the Escherichia coli periplasm and that it depolarizes the c
169 r, we made the surprising discovery that the Escherichia coli periplasmic glycerol-3-phosphate (G3P)-
170 ng 10,000 compounds directly for stimulating Escherichia coli persister cell resuscitation, we identi
171 characterize host dependencies of two novel Escherichia coli phages, the T1-like siphophage LL5 and
172 bic growth on citrate (Cit(+)) evolved in an Escherichia coli population during adaptation to a minim
173 he "escape time" required for drug-resistant Escherichia coli populations to eclipse a threshold dens
174 eveal that colonization with curli-producing Escherichia coli promotes alphaSyn pathology in the gut
176 ntional 'on-bead' approach, we reconstituted Escherichia coli proteins MsbA and MscS and find that pe
179 ilarly affect both the efficiency with which Escherichia coli RNA polymerase incorporates dinucleosid
180 to visualize seven intermediates containing Escherichia coli RNAP with the transcription factor TraR
181 , can stimulate translesion RNA synthesis by Escherichia coli RNAP without altering the fidelity of n
183 one due to neutropenic sepsis and one due to Escherichia coli sepsis), each in the setting of progres
185 ons of increased chromosome occupancy of the Escherichia coli SMC complex, MukBEF, the chromosome is
191 rowth of the C. elegans dynamin mutant on an Escherichia coli strain with low vitamin B12 also strong
192 of febrile UTI is often caused by a virulent Escherichia coli strain, whereas recurrent infections an
193 e double-stranded DNA phages using two model Escherichia coli strains (K-12 and BL21) with known sequ
194 in vivo k (cat)s using metabolic specialist Escherichia coli strains that resulted from gene knockou
195 A library of recombinant non-pathogenic Escherichia coli strains was engineered to express seven
196 ation-enabled large-scale experiment wherein Escherichia coli strains were evolved in parallel after
197 rmine the antibiotic dose-response curves of Escherichia coli strains, and previous observations on a
200 sate consisting of heat-killed Gram-negative Escherichia coli Symbio and Gram-positive Enterococcus f
201 fitness effects of missense mutations in the Escherichia coli TEM-1 beta-lactamase antibiotic resista
203 n-mucin stain derived from enterohemorrhagic Escherichia coli that is tolerant to a wide range of gly
206 ve bioprocess using metabolically engineered Escherichia coli The pretreatment step achieved an almos
207 scharging is not known to occur in bacteria, Escherichia coli ThrRS also possesses robust cross-editi
210 n most studied species and R1-R2 octamers in Escherichia coli To better understand the distribution o
215 ts of transcript, protein and flux levels of Escherichia coli under various growth conditions as well
216 protein expressed in mammalian cells and in Escherichia coli using in vitro and in vivo methods.
218 . smegmatis, which possesses homologs of the Escherichia coli uvrA, uvrB, and uvrC genes, removes cyc
219 us with heterotrophic Escherichia coli K-12, Escherichia coli W, Yarrowia lipolytica, or Bacillus sub
222 charide synthesis, as has been suggested for Escherichia coli We find that ftsH interacts with divers
223 monas aeruginosa, Staphylococcus aureus, and Escherichia coli We have previously demonstrated that sp
224 genotypes in three distinct mRNA contexts in Escherichia coli We uncovered generic principles governi
227 We experimentally evolved populations of Escherichia coli with genetically perturbed TMs for 1,00
228 from a biochemical analysis of the purified Escherichia coli YecSC-FliY cysteine/cystine import syst
229 some profiling analysis of phage T4-infected Escherichia coli yielded protected mRNA fragments within
231 e (Staphylococcus aureus) and Gram-negative (Escherichia coli) bacterial pathogens as well as with he
233 -encoding plasmid was present in K. oxytoca, Escherichia coli, and Enterobacter cloacae isolates from
234 ium tuberculosis, Staphylococcus aureus, and Escherichia coli, and identify thousands of MGEs, includ
236 is class include M.EcoGII and M.EcoP15I from Escherichia coli, Caulobacter crescentus cell cycle-regu
238 d analysis of the three most common species, Escherichia coli, Enterococcus faecalis and Bacteroides
239 ACPs in complex with the elongating KSs from Escherichia coli, FabF and FabB, in order to better unde
240 ost well-studied of organisms, the bacterium Escherichia coli, for ~65% of promoters we remain ignora
242 ed from intestinal bacteria and expressed in Escherichia coli, has become commercially available.
243 ble for recycling peptidoglycan fragments in Escherichia coli, has not been annotated for most intrac
244 ine that the high-persister mutant strain of Escherichia coli, HipQ, is associated with the phenotype
245 hat is present in mycobacteria but absent in Escherichia coli, is required for the EsxA:B separation.
246 vitro antimicrobial activity of CAR against Escherichia coli, Listeria monocytogenes, Salmonella ent
248 ution digestions of proteomes extracted from Escherichia coli, mouse embryonic fibroblast cell cultur
249 o difference in the prevalence of pathogenic Escherichia coli, norovirus, or Giardia genes in the dom
250 ive organisms, including the human pathogens Escherichia coli, Pseudomonas aeruginosa, and Vibrio cho
251 erable 'all-in-one' vector was functional in Escherichia coli, Pseudomonas syringae and Klebsiella pn
252 AAE genes, expressed them heterologously in Escherichia coli, purified the corresponding recombinant
254 tein HU and on the ParB partition protein in Escherichia coli, revealing partially reversible dissoci
258 e finding that commensal bacteria, including Escherichia coli, stimulated HDAC activity through metab
260 TPS1 and with a heterologous TPS (OtsA) from Escherichia coli, under the control of the TPS1 promoter
261 tribution of the FinO-domain ProQ protein in Escherichia coli, we carried out RIL-seq to identify RNA
262 -canonical cross-links into the cell wall of Escherichia coli, we generated a bacterium where up to 3
263 tive guidelines for compound accumulation in Escherichia coli, we have converted the antibiotic Riboc
264 rary of the bla(ampC) beta-lactamase gene of Escherichia coli, we identified mutations that allow gro
265 monitoring of gene-copy-number mutations in Escherichia coli, we show that gene duplications and amp
269 ted, arsH1 and arsH2 genes were expressed in Escherichia coli, which has an endogenous arsRBC operon
270 into a Flux Balance Analysis (FBA) model of Escherichia coli, which quantitatively revealed potentia
271 anslocation of a gut-resident human pathogen Escherichia coli, which spreads systemically and caused
272 tive Shigella species are close relatives of Escherichia coli, yet relatively few previously describe
273 , consists of an RNA-guided Cas9 nickase, an Escherichia coli-derived uracil DNA N-glycosylase (eUNG)
274 We used a preclinical model of uropathogenic Escherichia coli-induced acute pyelonephritis to determi
276 l inflammatory profile accounted for reduced Escherichia coli-specific responses in aged MAIT cells c
298 e dominated by facultative anaerobic genera (Escherichia, Enterococcus, and Streptococcus), with mult
299 overall and individually at the genus level: Escherichia, Klebsiella, Enterobacter, Pseudomonas, and
300 ving potential clinical relevance, including Escherichia-Shigella linked to urinary tract infections.