ライフサイエンスコーパス: Eukarya

1 se of Bacteria, Archaea are not simply 'mini Eukarya'.

2 hree domains of life (Bacteria, Archaea, and Eukarya).

3 hree domains of life (Archaea, Bacteria, and Eukarya).

4 hesis in Bacteria and sterol biosynthesis in Eukarya.

5 hat is conserved in Eubacteria, Archaea, and Eukarya.

6 e conserved among the Bacteria, Archaea, and Eukarya.

7 ia, and at least four in archaea and nine in eukarya.

8 acetylated by the related Nat3 acetylase in eukarya.

9 pted genomic strategies currently present in Eukarya.

10 ative organisms from eubacteria, archaea and eukarya.

11 species but are absent from the Archaea and Eukarya.

12 ne in bacteria, four in archaea, and nine in eukarya.

13 es have only been identified in bacteria and eukarya.

14 RNA(Sec) remained unresolved for archaea and eukarya.

15 ea, but the family is to this date absent in Eukarya.

16 three domains of life: Archaea, Bacteria and Eukarya.

17 evolved before the divergence of Archaea and Eukarya.

18 ss and ER associated degradation pathways in Eukarya.

19 ucleoside found in tRNA(GUN) of Bacteria and Eukarya.

20 ost of the ESPs that make it a member of the Eukarya.

21 the three domains of Bacteria, Archaea, and Eukarya.

22 er that is structurally conserved throughout eukarya.

23 all subunit rRNAs from bacteria, archaea and eukarya.

24 Sm and Sm-like RNA-associated proteins from eukarya.

25 ied from Archaea as compared to Bacteria and Eukarya.

26 DNA lesions and involves over 30 proteins in eukarya.

27 ion -3, reminiscent of the Kozak sequence of Eukarya.

28 embers known from the Bacteria, Archaea, and Eukarya.

29 riety of organisms from archaea, bacteria to eukarya.

30 D-loops of tRNA from Archaea, Bacteria, and Eukarya.

31 ular sensors of extracellular signals in all eukarya.

32 f life, being found in bacteria, archaea and eukarya.

33 posite that of glycerolipids of Bacteria and Eukarya.

34 m of one gene in Archaea to seven or more in Eukarya.

35 s evident against representative bacteria or eukarya.

36 rs have been identified only in bacteria and eukarya.

37 utionary relationships with the Bacteria and Eukarya.

38 n, recombination, and repair in bacteria and eukarya.

39 the ABC-transporter systems of Bacteria and Eukarya.

40 ibozyme that is present in both bacteria and eukarya.

41 d parallel evolution of a histone variant in Eukarya.

42 ke proteins date back close to the origin of Eukarya.

43 ilies are included for bacteria, archaea and eukarya.

44 e anticodon of several tRNAs in bacteria and eukarya.

45 ange of proteins from bacteria, archaea, and eukarya.

46 anii to be comparable in size to that of the Eukarya.

47 A topoisomerases from bacteria, archaea, and eukarya.

48 eins that play a crucial role in Archaea and Eukarya.

49 the acetate kinase in Bacteria, Archaea, or Eukarya.

50 ect a broad range of hosts from Bacteria and Eukarya.

51 ling enzymes found in bacteria, viruses, and eukarya.

52 on in Bacteria and, more rarely, Archaea and Eukarya.

53 tivities involved in RNA 3'-end formation in Eukarya.

54 a and metabolic enzymes between Bacteria and Eukarya.

55 ected from bacteria compared with archaea or eukarya.

56 es the earliest diverging branches of domain Eukarya.

57 t functional IPKs also exist in Bacteria and Eukarya.

58 the other two domains of life, Bacteria and Eukarya.

59 as the replicative helicases in archaea and eukarya.

60 ctivation of the MCM helicase in archaea and eukarya.

61 neral, conserved mechanisms found throughout eukarya.

62 related to known RNA viruses of Bacteria and Eukarya.

63 in bacteria, at least 4 in archaea and 9 in eukarya.

64 hese properties are conserved in Archaea and Eukarya.

65 s, including those of bacteria, archaea, and eukarya.

66 repair or splicing reactions in archaea and eukarya.

67 many DNA metabolic processes in archaea and eukarya.

68 ion, with examples in Archaea, Bacteria, and Eukarya.

69 enzymes widespread in Bacteria, Archaea and Eukarya.

70 omponents are regulated differ widely across Eukarya.

71 PPs) varies from 1 in bacteria to 9 or 10 in eukarya.

72 binases observed in Archaea, Eubacteria, and Eukarya.

73 nserved pathways present ubiquitously across eukarya?

74 omprised bacteria (98.01%), archaea (1.81%), eukarya (0.07%) and viruses (0.11%).

75 hondria (16 S-like 0.89, 23 S-like 0.69) and Eukarya (18 S 0.81, 28 S 0.86).

76 acteria (81%), followed by Archaea (15%) and Eukarya (3%).

77 erformed by the RecA protein, whereas in the eukarya a related protein called Rad51 is required to ca

78 ilities during the course of evolution while Eukarya acquired a number of diverse molecular functions

79 three domains of life (bacteria, archaea and eukarya): additional strand catalytic 'E' (ASCE) P-loop

80 In bacteria and eukarya, all known lysyl-tRNA synthetases are subclass I

81 ease HI (RNH) domains present in Eubacteria, Eukarya, all long-term repeat (LTR)-bearing retrotranspo

82 aproteobacteria and Gammaproteobacteria) and eukarya (Alveolata, Fungi, Stramenopiles and Chloroplast

83 -DNA and protein-protein interactions within Eukarya, an event unlikely to occur in either an anoxic

84 The earliest Eukarya, anaerobic mastigotes, hypothetically originated

85 teins of Eubacteria and the FEN1 proteins of Eukarya and Archaea are members of a family of structure

86 Bacteria, Eukarya and Archaea constituted >98%, ~1% and <1% of Shi

87 However, Eukarya and Archaea exclusively use the pyroA pathway.

88 he trmD gene), the identity of the enzyme in eukarya and archaea is less clear.

89 ndent ligases are found predominantly in the eukarya and archaea whereas NAD+-dependent DNA ligases a

90 Trm10 is conserved throughout Eukarya and Archaea, and mutations in the human gene (TR

91 Its homologs, present in Eukarya and Archaea, are part of protein complexes that

92 Histones compact and store DNA in both Eukarya and Archaea, forming heterodimers in Eukarya and

93 In eukarya and archaea, selenocysteine insertion requires a

94 for replication initiation and elongation in eukarya and archaea.

95 m10 homologs are widely conserved throughout Eukarya and Archaea.

96 O-methylation, one rRNA modification type in Eukarya and Archaea.

97 licase necessary for DNA replication in both eukarya and archaea.

98 es suggest a deep evolutionary divergence of Eukarya and Archaea; C27-C29 steranes (derived from ster

99 ns are found in archaea and the cytoplasm of eukarya and are believed to function like other chaperon

100 Hemoglobins are ubiquitous in Eukarya and Bacteria but, until now, have not been found

101 are poorly understood when compared with the Eukarya and Bacteria domains of life.

102 In Eukarya and Bacteria it has been shown that membrane doc

103 In both eukarya and bacteria, the addition of Cys to dehydroalan

104 sent in the anticodon region of tRNA(GUN) in Eukarya and Bacteria, while G(+) is found at position 15

105 ed to previously characterized proteins from Eukarya and Bacteria.

106 s these organisms share characteristics with Eukarya and Bacteria.

107 is distinct from the RdRps of RNA viruses of Eukarya and Bacteria.

108 Archaea share genomic similarities with Eukarya and cellular architectural similarities with Bac

109 ed in the queuosine modification of tRNAs in eukarya and eubacteria and in the archaeosine modificati

110 erases and arrests the growth of unicellular eukarya and eukaryal viruses.

111 Eukarya and Archaea, forming heterodimers in Eukarya and homodimers in Archaea.

112 of SL trans-splicing and operons throughout Eukarya and improve gene discovery and annotation for a

113 d between the rRNAs of bacteria, archaea and eukarya and in mitochondrial rRNA, and in a proposed min

114 the presence of a primordial CTD code within eukarya and indicates that proper recognition of the chr

115 Type I IDI, which is found in Eukarya and many Bacteria, catalyzes the isomerization o

116 of informational enzymes between Archaea and Eukarya and metabolic enzymes between Bacteria and Eukar

117 In Eukarya and most Archaea, DNA-bound histone proteins rep

118 een discovered to date: PurH in Bacteria and Eukarya and PurO in Archaea.

119 DNA recombinases (RecA in bacteria, Rad51 in eukarya and RadA in archaea) catalyse strand exchange be

120 ee-living proteomes of Archaea, Bacteria and Eukarya and reconstructed species phylogenies while trac

121 des the 174 taxa into Archaea, Bacteria, and Eukarya and satisfactorily sorts most of the major group

122 shares many features with the NHEJ system of eukarya and suggest that this DNA repair pathway arose b

123 and distributions across Archaea, Bacteria, Eukarya and viruses revealed six evolutionary phases, th

124 A gene-focused analysis of bacteria archaea, eukarya and viruses showed a vertical partition of the c

125 Eukarya and, more recently, some bacteria have been show

126 TFS (TFIIS in Eukarya) and the Spt4-Spt5 complex are universally encod

127 level, we conclude that the SSBs of archaea, eukarya, and bacteria share a common core ssDNA-binding

128 isms used by termination factors in archaea, eukarya, and bacteria to disrupt the TEC may be conserve

129 communities of viruses, bacteria, fungi, and Eukarya, and live as biofilms.

130 e for Bacteria, Saccharomyces cerevisiae for Eukarya, and Methanococcus jannaschii for Archaea, provi

131 represent extremely distal points within the Eukarya, and one such organism, Trypanosoma brucei, has

132 is a complex community of Bacteria, Archaea, Eukarya, and viruses that infect humans and live in our

133 ds between and within proteomes belonging to Eukarya, Archaea, and Bacteria along the branches of a u

134 is accepted then the three cellular domains, Eukarya, Archaea, and Bacteria, would collapse into two

135 Eukarya, Archaea, and some Bacteria encode all or part o

136 ous ATP-dependent proteases that function in eukarya, archaea, and some bacteria.

137 nd Trm5 are, respectively, the bacterial and eukarya/archaea methyl transferases that catalyze transf

138 e lengths of orthologous protein families in Eukarya are almost double the lengths found in Bacteria

139 e initiation process in archea, bacteria and eukarya are also summarized.

140 ies and differences of those of bacteria and eukarya are highlighted.

141 assembly proteins found in the Bacteria and Eukarya are not universally conserved in archaea.

142 , but the equivalent proteins in archaea and eukarya are unknown.

143 ea, Bacteria, chloroplasts, mitochondria and Eukarya, as predicted by the partition function approach

144 he phylogenies of the bacteria, archaea, and eukarya, as well as an intriguing set of problems to be

145 ation across three domains of life involving Eukarya, Bacteria and Archaea demonstrate its roles in r

146 Of the three domains of life (Eukarya, Bacteria, and Archaea), the least understood is

147 tionship spanning the three domains of life (Eukarya, Bacteria, and Archaea).

148 ral ancestor that predates the divergence of Eukarya, Bacteria, and Archaea.

149 ifferent hosts in all three domains of life: Eukarya; Bacteria; and Archaea that diverged billions of

150 In archaea and eukarya, box C/D ribonucleoprotein (RNP) complexes are r

151 long been considered similar in Bacteria and Eukarya but accomplished by a different unrelated set of

152 ates are remarkably similar for Bacteria and Eukarya, but Archaea exhibit a significantly slower aver

153 t coherently polyadenylated, whereas mRNA of Eukarya can be separated from stable RNAs by virtue of p

154 osmopolitan clades of Bacteria, Archaea, and Eukarya characterized by their ribosomal RNA gene phylog

155 In eukarya, dehydroamino acids in signaling proteins are in

156 osed of one or two (in Archaea) or eight (in Eukarya) different subunits.

157 ally transferred to certain bacteria and few eukarya, displays a more relaxed substrate range and may

158 to viruses associated with the Bacteria and Eukarya domains of life, further strengthening the hypot

159 ion is enriched in reproductive cells across eukarya - either just prior to or during meiosis in sing

160 sensory proteins from eubacteria, archea and eukarya eliminates the redox response.

161 he counterpart of this enzyme in archaea and eukarya, encoded by the trm5 gene, is unrelated to trmD

162 conservation of the ribosome among kingdoms (Eukarya, Eubacteria, and Archaea).

163 This phenomenon suggests that Prokarya and Eukarya evolved in anoxic and oxic environments, respect

164 likely evolved independently in Archaea and Eukarya for more than 2000 million years.

165 standing effort to search in prokaryotes and eukarya for proteins promoting HJ migration.

166 surface fissure water systems and identified Eukarya from a river that are genetically identical for

167 They are found throughout the Eukarya, functioning in core cellular processes such as

168 hree domains of life: Archaea, Bacteria, and Eukarya (fungi).

169 hree cellular domains Archaea, Bacteria, and Eukarya has become a central problem in unraveling the t

170 How this stage of the cell cycle unfolds in Eukarya has been clearly defined and considerable progre

171 Ribosomal expansion in Asgard and Eukarya has been incremental and iterative, without subs

172 Eukarya have been discovered in the deep subsurface at s

173 of biological signalling in the Bacteria and Eukarya have revealed a new class of haem-containing pro

174 milies of alternative-splicing regulators in Eukarya, have two types of RNA-recognition motifs (RRMs)

175 GCNA proteins are expressed across eukarya in pluripotent cells and have conserved function

176 Following the discovery of the first Eukarya in the deep subsurface, intense interest has dev

177 ngly, when we included large body size micro-eukarya in the soil, it shifted the soil carbon cycling,

178 Archaea share many similarities with eukarya in their information processing pathways and hav

179 Members of the domains Bacteria and Eukarya, in general, contain one type of SSB or RPA.

180 the tree of life, with Bacteria, Archaea and Eukarya included.

181 pathway found in some Bacteria, Archaea, and Eukarya, including the cytosol of plants.

182 es, but not to date elsewhere in bacteria or eukarya, indicates that the gene that encodes this enzym

183 diverse and rich assemblages of Bacteria and Eukarya indicating that there may be high rates of dispe

184 teins MnmE and MnmG (and their homologues in Eukarya) install a 5-carboxymethylaminomethyl (cmnm(5))

185 on of bacteria as Prokarya while subdividing Eukarya into uniquely defined subtaxa: Protoctista, Anim

186 But, the equivalent value for Eukarya is <10%; (iii) HGT will have very little impact

187 (FtsJ), highly conserved from eubacteria to eukarya, is responsible for the 2'-O-ribose methylation

188 on of the branched structure in Bacteria and Eukarya lends further support to the archaeal rooting of

189 In both bacteria and eukarya, lesions located in transcribed strands are repa

190 s archaeal system combines bacteria-like and eukarya-like components, which suggests the possible con

191 slation in this archaeon with bacteria-like, eukarya-like, and potentially novel translation mechanis

192 mple aspects of the evolution of protocells, eukarya, multi-cellularity and animal societies.

193 ntral players in protein synthesis, which in Eukarya need to be delivered from the nucleus to the cyt

194 MAT is strongly conserved among bacteria and eukarya, no homologs have been recognized in the complet

195 perclass are related with proteins in either Eukarya or Bacteria, as recognized previously.

196 n metabolism and decoding in archaea than in eukarya or bacteria.

197 rRNAs harbor tenfold more m(5)C compared to Eukarya or Bacteria.

198 ing proteins to the endoplasmic reticulum in eukarya or to the inner membrane in prokarya.

199 AAA+ ring of the 19S regulatory particle in eukarya or with the AAA+ proteasome-activating nucleotid

200 DNA damage-scanning proteins from different Eukarya organisms.

201 In Eukarya, PCNA is known to interact with more than a doze

202 e massive rise of architectural novelties in Eukarya perhaps linked to multicellularity.

203 This essential reaction in bacteria and eukarya permits a single tRNA to decode multiple codons.

204 37 in tRNA(Phe) and known previously only in eukarya, plus two new wye family members of presently un

205 tors have been independently lost across the Eukarya, pointing to genetic buffering within the essent

206 f the rDNA are variable in both prokarya and eukarya, posing interesting questions about the biology

207 out ssDNA, the mechanism of ssDNA binding in eukarya remains speculative.

208 ough their phylogenetic placement within the Eukarya remains uncertain.

209 Planktonic Bacteria, Archaea and Eukarya reside and compete in the ocean's photic zone un

210 one, four and nine in Bacteria, Archaea and Eukarya, respectively.

211 ec61alpha channel in Bacteria or Archaea and Eukarya, respectively.

212 occus aureus, and Bacillus subtilis; and the eukarya Schizosaccharomyces pombe, Aspergillus oryzae, a

213 Among eukarya, SftH homologs are present in plants and fungi.

214 ations for TTP family members throughout the eukarya, since species from all four kingdoms contain pr

215 ansferase center, and G1735A, mapping near a Eukarya-specific bridge to the 40S subunit.

216 In Eukarya, stalled translation induces 40S dissociation an

217 -acid sequences of globins from Bacteria and Eukarya suggests that they share an early common ancesto

218 most inclusive taxa: Prokarya (bacteria) and Eukarya (symbiosis-derived nucleated organisms).

219 fe, the archaeal system is closer to that of eukarya than bacteria.

220 e more similar to the metabolic processes of Eukarya than those of Bacteria, Archaea are not simply '

221 e more similar in sequence to those found in eukarya than to analogous replication proteins in bacter

222 share much closer evolutionary ties with the Eukarya than with the superficially more similar Bacteri

223 cally address the major class of circRNAs in Eukarya that are generated by a spliceosome-catalyzed ba

224 nveiled sharing patterns between Archaea and Eukarya that are recent and can explain the canonical ba

225 nd one small protein subunit, in archaea and eukarya the enzyme contains several (> or =4) protein su

226 ts the first evidence that in Archaea, as in Eukarya, the oligosaccharides N-linked to glycoproteins

227 of the enzyme exert this function in various eukarya (there termed PRORPs) and in some bacteria (Aqui

228 ere found adjacent to each other, whereas in eukarya these genes are on separate chromosomes.

229 emperature cannot sterilize most bacteria or eukarya, these data support the hypothesis that meteorit

230 Focus diversified beyond the Eukarya to include the hidden world of microbial life.

231 ide phyletic distribution extending from the Eukarya to the Archaea.

232 of the three domains, bacteria, archaea, and eukarya, to unwind RNA-containing substrate was determin

233 ymes are prevalent in bacteria, archaea, and eukarya, Tpt1 is uniquely essential in fungi and plants,

234 Type IB DNA topoisomerases are found in all eukarya, two families of eukaryotic viruses (poxviruses

235 The discovery of a group of Eukarya underground has important implications for the s

236 the functional and ecological success of the Eukarya, underpinning much of their modern diversity in

237 -1) is incorporated posttranscriptionally in eukarya via an unusual 3'-5' nucleotide addition reactio

238 translational regulation of DNA packaging in Eukarya vs. the Archaea.

239 re the potential formations of homodimers in Eukarya, we utilized MD-based AWSEM and AI-based AlphaFo

240 tallomes of 23 Archaea, 233 Bacteria, and 57 Eukarya were constructed.

241 greatest coverages of genes of bacteria and eukarya were detected in first layers, while the highest

242 paraphyletic basal group, while Bacteria and Eukarya were monophyletic and derived.

243 , where superkingdoms Archaea, Bacteria, and Eukarya were specified; and (3) organismal diversificati

244 here its function has been uncertain, and in eukarya where Cdc48 participates by largely unknown mech

245 usly found in all life including archaea and eukarya, where the enzyme is referred to as Dim1.

246 s occur widely in the Archaea, Bacteria, and Eukarya, where they play important roles in metabolism o

247 Lig1) and ligase IV (Lig4) are ubiquitous in Eukarya, whereas ligase III (Lig3), which has nuclear an

248 e regulatory system, RNAi is used throughout eukarya, which indicates a long evolutionary history.

249 ty of translation regulation in Bacteria and Eukarya with large-scale effects on cellular functions.

250 izontal gene transfer to the Bacteria or the Eukarya, would seem to reflect the significant innovatio

251 ependently evolved multiple times throughout Eukarya, yet our understanding of these phenomena is lim

252 al for translational fidelity in Archaea and Eukarya; yet it does not occur in Bacteria and has never