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1 FISH analysis indicated that SOD knockdown moderately in
2 FISH analysis indicated the presence of Rickettsia bacte
3 FISH with break-apart probes identified CCND2 rearrangem
4 histochemistry 3+; 3 immunohistochemistry 2+/FISH amplified), whereas 7 were HER2- (3 immunohistochem
6 enome structures that are consistent with 3D FISH data and known knowledge about the human chromosome
9 patient with childhood-onset melanoma had a FISH aberration compared with 4 patients with adult-onse
11 h a FISH ratio >/= 2.0, 1.3% (n = 35) with a FISH ratio >/= 2.0 despite a HER2 signal < 4.0, and 3.0%
12 verall, 11.8% (n = 339) were positive with a FISH ratio >/= 2.0, 1.3% (n = 35) with a FISH ratio >/=
14 e how we overcame the challenges of adapting FISH for imaging in plant tissue and provide a step-by-s
15 culating tumor cells (CTC) with aberrant ALK-FISH patterns [ALK-rearrangement, ALK-copy number gain (
17 coupled with tyramide signal amplification (FISH-TSA), that this gene is located in the distal regio
18 ngly paradoxical relationship between 3C and FISH, both in minimal polymer models with dynamic loopin
20 set of chromosomes, for which both Hi-C and FISH data are available, demonstrate that GEM-FISH can o
22 ugh systematically integrating both Hi-C and FISH data with the prior biophysical knowledge of a poly
23 s indicate that cross-validation of Hi-C and FISH should be carefully designed, and that jointly cons
26 f the combined single-cell (meta)genomic and FISH approach for studies of complicated symbiotic syste
29 atment effect was found for all ER, IHC, and FISH levels, except for the ER-positive/HER2 low FISH ra
33 eliable alternative to Sanger sequencing and FISH for studying the genetic properties of the Ig loci.
35 gh concordance with standard methods such as FISH, and its success in the POLLUX and CASTOR clinical
36 (SABER), which endows oligonucleotide-based FISH probes with long, single-stranded DNA concatemers t
39 rst application, to our knowledge, of BONCAT-FISH and BONCAT-FACS within an environmental context, we
41 is-free survival (5 years) for monosomy 3 by FISH was 40% to 60%, by MLPA was 30% to 40%, by SNP was
42 u co-examination of chromosome aneuploidy by FISH and immunostaining of multiple biomarkers displayed
46 > cogain > polysomy > disomy) as detected by FISH, and evaluated on a semiquantitative scale (modifie
48 port the original categorizations of HER2 by FISH status in BCIRG/Translational Research in Oncology
49 d by Hi-C, and spatial distance, measured by FISH, are often assumed to quantify the same phenomena a
50 he tumor tissue assessed by qPCR (but not by FISH) have significantly more often a high number of HER
52 cell sorting, DNA sequencing, qPCR and CARD-FISH assays revealed discrepancies involving the identif
54 ion fluorescence in situ hybridization (CARD-FISH) on >14 500 archaeal and bacterial cells (Methanosa
55 ion fluorescence in situ hybridization (CARD-FISH), we show that only four novel clonal phylotypes we
57 This assay detected aberrant centromeric CO-FISH patterns consistent with sister chromatid exchange
58 e, superresolution imaging of centromeric CO-FISH using structured illumination microscopy implied th
60 ation, we developed an assay with dual-color FISH that enables detection of HR between different pair
62 s cost and time compared to the conventional FISH protocols and opens up new opportunities to investi
65 es), respectively, and generated 26 distinct FISH signals that can be used as a barcode to uniquely l
66 We show that SABER amplified RNA and DNA FISH signals (5- to 450-fold) in fixed cells and tissues
67 g RNA-seq, single-molecule RNA FISH, and DNA FISH, we detected a cancer sample with EML4-ALK fusion R
71 ng of an enigma as beyond low-resolution DNA FISH we do not have the appropriate tools to analyze the
72 on strategy that provides flexibility to DNA FISH experiments by coupling a single primary probe synt
74 both classes of NADs were confirmed via DNA-FISH, which also detected Type I but not Type II probes
76 (FISH) using prespecified criteria and EGFR FISH-positive status was defined as high polysomy or amp
78 .78-1.27; p=0.96; respectively; and for EGFR FISH non-positive 1.00, 0.85-1.17; p=0.97; and 1.03, 0.8
79 ogy regardless of EGFR FISH status (for EGFR FISH-positive 0.88, 0.68-1.14; p=0.34; and 0.99, 0.78-1.
81 linical trials in different settings in EGFR FISH-positive and, in particular, EGFR-amplified esophag
83 th non-squamous histology regardless of EGFR FISH status (for EGFR FISH-positive 0.88, 0.68-1.14; p=0
85 oup and 198 in the control group in the EGFR FISH-positive subpopulation, progression-free survival d
86 did not differ among patients who were EGFR FISH non-positive with squamous cell histology (HR 1.04,
88 gression-free survival in patients with EGFR FISH-positive cancer and overall survival in the entire
89 fied subgroup analyses of patients with EGFR FISH-positive squamous-cell carcinoma cancers are encour
90 tion improves MERFISH performance when fewer FISH probes are used for each RNA species, which should
96 diversity detected by high-resolution fibre-FISH and conclude that extensive molecular analysis is r
100 sed fluorescence in situ hybridization (Flow-FISH) for IFN-gamma to multicolor flow cytometry that al
101 els of other cytokines, indicating that Flow-FISH helps identify the best cytokine producers during T
104 Three studies reported survival data for FISH, 1 study reported survival data for CGH, 1 study re
108 ISH data are available, demonstrate that GEM-FISH can outperform previous chromosome structure modeli
113 by fluorescence in situ hybridization (HiPR-FISH), a versatile technology that uses binary encoding,
114 Combined with super-resolution imaging, HiPR-FISH shows the diverse strategies of ribosome organizati
116 umber by fluorescence in-situ hybridisation (FISH) can identify patients most likely to benefit from
117 um using fluorescence in situ hybridisation (FISH) to differentiate individual meiotic chromosomes 1
120 ning and fluorescence in situ hybridization (FISH) analyses confirmed that L. campestre, L. heterophy
121 IHC and Fluorescence in situ hybridization (FISH) analyses when analyzed with Receiver Operative Cha
123 es using fluorescence in situ hybridization (FISH) and growth in microfluidic drops demonstrate that,
124 e we used fluorescent in situ hybridization (FISH) and immuno-FISH on metaphase chromosomes from kary
126 etaphase fluorescence in situ hybridization (FISH) and PacBio sequencing on the cell-line UPCI:SCC090
127 nterphase fluorescent in situ hybridization (FISH) and sequencing of purified cell populations from p
128 ction is Fluorescence In Situ Hybridization (FISH) and while highly sensitive and specific, it is als
130 gical and fluorescent in situ hybridization (FISH) approaches respectively, and shown to be distribut
131 (3C) and fluorescence in situ hybridization (FISH) are two widely used technologies that provide dist
132 ion via a fluorescent in situ hybridization (FISH) assay, which can detect those rearrangements to a
133 (SKY) and fluorescent-in-situ hybridization (FISH) demonstrated coordinate localization and transloca
134 ly by 3D fluorescence in situ hybridization (FISH) experiments and show that active RNAPII is enriche
136 Sperm fluorescence in situ hybridization (FISH) for chromosomes X, Y, and 18 was used to determine
138 led using fluorescent in situ hybridization (FISH) for RNA, and then isolated by fluorescent activate
139 ule mRNA Fluorescence In Situ Hybridization (FISH) has been established as the standard method for th
141 (IHC) and fluorescent in situ hybridization (FISH) HER2 testing guidelines in 2007 (AC2007) and updat
142 xpansion, fluorescent in situ hybridization (FISH) imaging of RNA can be performed with high yield an
143 on using fluorescence in situ hybridization (FISH) in an additional 87 osteosarcomas, with IGF1 recep
146 ckground Fluorescence in situ hybridization (FISH) is a standard method for 1p/19q codeletion testing
148 -targeted fluorescent in situ hybridization (FISH) microscopy, we demonstrate that NCLC1 cells form i
150 specific fluorescence in situ hybridization (FISH) probes designed in our lab or obtained from commer
152 ation, a fluorescence in situ hybridization (FISH) protocol was established to detect different viral
154 ule mRNA fluorescence in situ hybridization (FISH) reveals that, upon site-specific CTCF disruption o
156 specific fluorescence in situ hybridization (FISH) technique that allows visualization of COs directl
157 pment of fluorescence in situ hybridization (FISH) technologies enables the quantification of telomer
159 We use fluorescence in situ hybridization (FISH) to characterize the endogenous expression of Tacr1
160 rmined by fluorescent in situ hybridization (FISH) using prespecified criteria and EGFR FISH-positive
162 tatus by fluorescence in situ hybridization (FISH), comparative genomic hybridization (CGH), microsat
163 escence, fluorescence in situ hybridization (FISH), micronuclei imaging, and the telomere shortest le
164 ed by RNA fluorescent in situ hybridization (FISH), Northern blots, and RNA sequencing-implicates MRP
165 aint DNA-fluorescence in situ hybridization (FISH), RNA-FISH and protein fluorescence, 3D ATAC-PALM c
166 ) MCL by fluorescence in situ hybridization (FISH), whole-genome/exome sequencing, and gene-expressio
167 fluorescence imaging in situ hybridization (FISH)-based assay for the detection of duck hepatitis B
169 based on fluorescence in situ hybridization (FISH)-supplemented immunohistochemistry of biopsied tumo
177 sion diagnosis exist, including pan-Trk IHC, FISH, reverse transcription PCR, DNA-based next-generati
179 cent in situ hybridization (FISH) and immuno-FISH on metaphase chromosomes from karyotypically normal
180 e/fluorescence in situ hybridization (immuno-FISH) assays demonstrate frequent asymmetry in genomic c
182 nt subtraction enrichment and immunostaining-FISH (SE-iFISH), to detect a variety of aneuploid circul
184 ohesin SMC1A, and used four-color-interphase-FISH coupled with BrdU incorporation and analyses of sen
185 Recent technological advances have leveraged FISH to visualize these features in a highly multiplexed
186 xed snapshots as a result of techniques like FISH and Hi-C, little is known about chromatin dynamics
187 ysis of a sample processed using an off-line FISH protocol, the total analysis time was reduced from
188 levels, except for the ER-positive/HER2 low FISH ratio (>/=2 to <5) group (DFS: 3-way ITT Pvalue for
197 plied this approach to image single-molecule FISH in combination with immunofluorescence (smFISH-IF)
199 concept of the usefulness of single-molecule FISH to increase knowledge about the interactions betwee
203 synaptic retrograde tracing, and multiplexed FISH to characterize the cells of the mouse habenula.
209 ent advances in multiplexed amplification of FISH signals, it remains challenging to achieve high lev
210 wever, background-from off-target binding of FISH probes and cellular autofluorescence-can become lim
212 ent has paved the way to the construction of FISH probes entirely from synthetic oligonucleotides (ol
216 sing probes based on oligonucleotides (oligo-FISH) is a useful tool for chromosome identification and
219 el optimization of a method that is based on FISH and proximity ligation techniques to quantify mRNA
220 evaluation have relied on simulation and/or FISH imaging that typically features a handful of low re
225 ation using peptide nucleic acid probes (PNA-FISH) and matrix-assisted laser desorption ionization-ti
227 e describe an optimized quantitative FISH (Q-FISH) protocol for measuring telomere length that bypass
228 Here we describe an optimized quantitative FISH (Q-FISH) protocol for measuring telomere length tha
235 ch produces a drastic signal increase in RNA FISH samples without increasing the fluorescent spot siz
238 -cell RNA sequencing and single-molecule RNA FISH to provide a systematic molecular atlas of full-thi
239 y, by combining RNA-seq, single-molecule RNA FISH, and DNA FISH, we detected a cancer sample with EML
242 encing, and at the single-cell level, by RNA-FISH, and is not attributable to differences in repressi
243 uorescence in situ hybridization (FISH), RNA-FISH and protein fluorescence, 3D ATAC-PALM connected mi
244 fluorescence in situ RNA hybridization (RNA-FISH) of the intron region of immediate early transcript
245 -cell flow cytometry and single-molecule RNA-FISH assays, we demonstrate that knocking down of CTCF o
249 stems such as multiplex RNA imaging with RNA-FISH and multiplex protein imaging with antibody-stainin
250 omatin tracing, RNA multiplexed error-robust FISH (MERFISH), multiplexed imaging of nucleome architec
257 e-cell RNA sequencing, for example, to smart FISH, large-scale calcium imaging from cortex and deep b
258 RNA fluorescent in situ hybridization (smRNA FISH), we show that egl-1 is transcribed in the mother o
265 to colorimetric in situ hybridization, sRNA-FISH signals can be imaged using super-resolution micros
267 plant tissue and provide a step-by-step sRNA-FISH protocol for studying sRNAs at the cellular and eve
269 n and G4 stabilization causes multi-telomere FISH signals and telomere loss, hallmarks of deficient t
271 cellular compartmental analysis of temporal FISH technique based on the cellular distribution of imm
274 matic review is sufficient to recommend that FISH and IGHV be performed as standard clinical tests fo
278 s neuroradiologist 1p/19q prediction and the FISH result was 84.8% (95 of 112; 95% confidence interva
280 the distribution of subpopulations from the FISH data, which quantitatively reproduces the Hi-C data
281 iologist 1p/19q prediction differed from the FISH result and (b) consensus neuroradiologist confidenc
286 ted by tREX have higher correlation with the FISH measurements than any of the comparison methods.
287 D structure from tREX is consistent with the FISH measurements, and the corresponding distances predi
288 us as determined with CMA disagreed with the FISH result and agreed with the consensus neuroradiologi
289 ethods may provide a suitable alternative to FISH as they are compatible with multiplexing and diagno
293 mparison methods to a Hi-C dataset for which FISH measurements are available to evaluate estimation a
297 and 1p/19q codeletion status determined with FISH that were accrued from January 1, 2010 to October 1
298 ma, we observed a high concordance rate with FISH for del17p, a risk defining CNV event (88% in POLLU