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1 Fd and Pf4 formed tactoids with different morphologies t
2 Fd, a related bacteriophage of Escherichia coli, has sim
3 Fd-GOGAT is a chloroplastic enzyme responsible for the r
4 Fd-OCT is a promising potential alternative modality to
6 the paramagnetic oxidized cluster of Pf 3Fe Fd with an intact disulfide bond reported previously are
7 emperature behavior for the forms of the 3Fe Fd with alternate disulfide orientations have been analy
8 ger forms of pFNRII bound more strongly to a Fd affinity column than did the shorter forms, pFNRII(IS
10 d between oxidized mNT and apo-ferredoxin (a-Fd) using UV-VIS spectroscopy and native-PAGE, as well a
12 ure of the reduced form of the 98-amino acid Fd domain determined by nuclear magnetic resonance (NMR)
16 ferredoxin (Fd), thioredoxins (Trxs), and an Fd-dependent Trx reductase (FTR), the Fd-FTR-Trxs system
17 n inactive scFab effector arm composed of an Fd region and light chain from two separate binders.
19 tion 95a, were combined individually with an Fd region known to generate a Hib PS-combining site when
20 fragments (the light chain and the Fc/2 and Fd fragments of the heavy chain) confirms the monoclonal
22 he N-terminal amino acids of the L chain and Fd remained unchanged, and a random HCDR3 library built
23 The library contained random L chains, and Fd segments enriched in VH domains encoded by the VHX24
24 een the FNR charge-reversal mutant E139K and Fd at 12 mM ionic strength (mu) is extremely impaired re
25 EtfAB bifurcates to afford alpha-FAD(*-) and Fd(-); a second bifurcation yields alpha-FADH(-) in the
28 NiR), indicating the genes encoding GSII and Fd-NiR in these prasinophytes evolved via vertical trans
31 results suggest that the C. tepidum Fd I and Fd II polypeptides each contain two bound [4Fe-4S] clust
35 act mAb, Fab, or F(ab')2 mass, intact LC and Fd masses, and CDR3 sequence coverage enabled determinat
37 ctron transfer pathways to the NAD(P)(+) and Fd reduction sites by a mechanism that is fundamentally
38 ier for two oxidoreductases from Pf, POR and Fd:NADP oxidoreductase, and the POR holoenzyme displayed
39 tron flow between mutant pFNRII proteins and Fd, showed there was a variation in k(obs) from 76 to 26
41 oxidation-derived redox pair, DsrC(red) and Fd(red), relative to the Qmo-MQ-Qrc (quinone-interacting
43 these domains induced potent anti-IZ or anti-Fd antibody responses in animals when fused to an HIV-1
46 wild-type Hs ISU cluster transfer to Hs apo Fd, k(2) approximately 540 M(-1) min(-1), relative 56 M(
48 change in the affinity of binding to the apo Fd since k(2) was found to be independent of the concent
49 ermined for cluster transfer from ISU to apo Fd for both Homo sapiens and Schizosaccharomyces pombe p
50 Fe-S cluster transfer from holo IscU to apo Fd in the presence of chaperone DnaK demonstrate an inhi
52 s rate constants for cluster transfer to apo Fd targets from Homo sapiens and S. pombe demonstrated t
60 odified version of filamentous bacteriophage Fd that produces significantly higher colorimetric signa
62 affected and where complex formation between Fd and the enzyme prevented the inhibition by either rea
71 The incipient fovea is present at fetal day (Fd) 100 as the only part of the retina that contains fiv
72 s and wholemounts of retinas from fetal day (Fd) 65 to adult animals were analyzed immunohistochemica
73 cones across 70% of the retina at fetal day (Fd) 88, indicating that it is expressed shortly after ph
74 nas from Macaca monkeys from ages fetal day (Fd) 89 through adulthood were double labeled using immun
75 s generated first in the fovea at fetal day (Fd)70-74 and with the last generated at the retinal edge
81 contrasts with GLU1, the major gene encoding Fd-GOGAT, which is most highly expressed in leaves and i
85 the ability of reduced [2Fe-2S] ferredoxin (Fd) to act as a catalytically competent electron donor d
90 ted RapJ and RapN, an associated ferredoxin (Fd) RapO, and three potential SAM-dependent O-methyltran
91 of the [2Fe-2S] vegetative cell ferredoxin (Fd) from Anabaena PCC 7120, each of which has a cluster
92 hree-iron, single cubane cluster ferredoxin (Fd) from the hyperthermophilic archaeon Pyrococcus furio
94 studied [Fe4S4] model complexes, ferredoxin (Fd), and to new data on high-potential iron-sulfur prote
98 l electron acceptor, P. furiosus ferredoxin (Fd), has been established from an FOR-Fd cocrystal struc
99 e of the paramagnetic, four-iron ferredoxin (Fd) from the hyperthermophilic archaeon Thermococcus lit
100 Spinach (Spinacea oleracea) leaf ferredoxin (Fd)-dependent nitrite reductase was treated with either
101 educed by the plastid-localized, ferredoxin (Fd)-dependent enzyme P Phi B synthase to yield 3Z-P Phi
103 radient regulation-like1 (PGRL1) ferredoxin (Fd) pathway, involved in recycling excess reductant to i
104 tion which reduces low potential ferredoxin (Fd) and high potential crotonyl-CoA using NADH as an ele
105 kely functions as proton-pumping ferredoxin (Fd): type-I cytochrome c oxidoreductase, which transitio
106 e-bound enzymes that use reduced ferredoxin (Fd) as an electron donor to reduce protons to molecular
107 otein (e.g., CODH/ACS or reduced ferredoxin (Fd)) to the FeS cluster which then directs electrons to
108 es on photosynthetically reduced ferredoxin (Fd), thioredoxins (Trxs), and an Fd-dependent Trx reduct
109 l truncation on interaction with ferredoxin (Fd), recombinant pFNRII proteins, differing by deletions
115 ontrast, uncleaved, histidine-tagged Foldon (Fd) domain-containing gp140 proteins (gp140UNC-Fd-His),
117 a mutation in only one of the two genes for Fd-GOGAT leads to a photorespiratory phenotype in the gl
118 tion K56A/K60A decreased the k(cat)/K(M) for Fd by 250-fold, whereas the triple mutation K56A/K60A/K2
119 30A on Delta9D decreased the k(cat)/K(M) for Fd by 4-, 22-, and 2400-fold, respectively, as compared
121 light of the presently available models for Fd-mediated electron transfer in Delta9D and other prote
125 mide revealed that carboxylate residues from Fd and lysine residues from Delta9D contribute to cross-
126 bilizing interactions in Pyrococcus furiosus Fd, however, lead to strong destabilization of the disul
127 s distinguished AlkB that couples with fused Fd-Fdr reductases from AlkB with alternate architectures
129 abine, busulfan, and antithymocyte globulin (Fd/Bu/ATG) was associated with the lowest TRM of 11.6% (
131 are abundant in uncleaved CZA97.012 gp140UNC-Fd-His proteins but very rare in native-like trimer popu
132 ) domain-containing gp140 proteins (gp140UNC-Fd-His), based on the same env genes, very rarely form n
133 ume of a single-diamond network (space group Fd 3 m) templated into gold from a triblock terpolymer c
135 (X), supports the F(X) --> F(A) --> F(B) --> Fd sequence of electron transfer on the acceptor side of
138 covalency is much lower in natively hydrated Fd active sites than in HiPIPs but increases upon water
139 e S K-edge XAS of the protein ferredoxin II (Fd II) from the D. gigas active site shows a decrease in
141 roduced to detect variants and impurities in Fd, Fc/2, and LC subunits of an IgG1 consistently across
142 f the activity of hydrogenosomal proteins in Fd KO cells show a fourfold increase in hydrogenase acti
143 aK reduces the rate of formation of the IscU-Fd complex (greater than 8-fold), but has little influen
144 analysis of these ferredoxins by localizing Fd, Fdx2, Fdx3, and Fdx6 to the chloroplast by using iso
145 ain-switched Fab fragment containing the M77 Fd fragment and a different light chain was able to reco
146 urements; and (2) that an alternative, minor Fd isoform has been overexpressed in plants, giving new
152 ther to explore the modularity of MMOR, MMOR-Fd and MMOR-FAD were connected in a non-native fashion.
155 transfer from MMOR-FAD(hq) to oxidized MMOR-Fd is extremely slow (k = 1500 M(-1) s(-1) at 25 degrees
156 rved in those cells expressing a non-mutated Fd (UMHC) or in IPTG-treated non-transduced V79 cells.
158 ps on Fd may situate the [2Fe-2S] cluster of Fd closer to W62, a surface residue that is structurally
161 so measured the midpoint redox potentials of Fd and Fdx2 and determined the kinetic parameters of the
163 rogen production kinetics in the presence of Fd, ferredoxin:NADP(+)-oxidoreductase (FNR), and NADP(+)
164 m of oxidized Fd I closely resembled that of Fd II; however, both spectra appeared to be unique relat
166 ated with growth pattern and size of CNVM on Fd-OCT, with correlation being stronger for classic lesi
167 en K56 and K60 and the carboxylate groups on Fd may situate the [2Fe-2S] cluster of Fd closer to W62,
168 giographic CNVM size correlated with size on Fd-OCT but correlation was better for classic CNVM (clas
170 s indicated that the CD spectrum of oxidized Fd I closely resembled that of Fd II; however, both spec
171 ng illumination confirmed that the minor pea Fd isoform promotes enhanced cyclic flow around photosys
173 are found in other hyperthermostable Fds, Pf Fd has two elements, the long helix and the triple-stran
174 n a longer helix and larger beta-sheet in Pf Fd, relative to other hyperthermostable Fds, more likely
175 clusters in wild-type and mutant forms of Pf Fd with Asp, Ser, Cys, Val, His, Asn, and Tyr residues o
179 ogether, our results suggest that PGR5/PGRL1-Fd CEF is most required under conditions when Fd becomes
180 natural carbohydrate decorated form of PSM (Fd-PSM) containing 40% of the core 1 blood group type A
182 ain deficient in sulfite assimilation, pssm2-Fd complemented bacterial growth when coexpressed with a
183 ctural analysis of myovirus P-SSM2 Fd (pssm2-Fd), which infects the cyanobacterium Prochlorococcus ma
184 inus sulfite reductase, revealing that pssm2-Fd can transfer electrons to a host protein involved in
185 ctase, which transitions to a proton-pumping Fd(red): nicotinamide adenine dinucleotide (NAD(+)) oxid
186 at the structural alternations in Pyrococcus Fd relative to other hyperthermostable Fds are not to in
188 P(+) oxidoreductase could use NADH to reduce Fd and thus facilitate ADO-mediated alkane production.
190 order of addition for substrate and reduced Fd showed high conversion of 18:0-ACP to 18:1-ACP (appro
191 enzyme-substrate complex with excess reduced Fd, a slower, linear rate (k(obsd) = 3.4 s(-1)) of produ
192 t rates of direct electron loss from reduced Fd to O2 However, this loss does not interfere with meas
196 idized enzyme-substrate complex with reduced Fd were studied by rapid-mix and chemical quench methods
198 for ferredoxin-dependent nitrite reductase (Fd-NiR), indicating the genes encoding GSII and Fd-NiR i
199 eracting proteins, namely nitrite reductase, Fd:NADP+ oxidoreductase, and Fd:thioredoxin reductase.
200 lier proposal that the structure of the same Fd with the R disulfide orientation resembles that of th
201 we overexpressed a minor pea (Pisum sativum) Fd isoform (PsFd1) in tobacco (Nicotiana tabacum) plants
203 k(2) approximately 170 M(-1) min(-1) for Sp Fd and k(2) approximately 169 M(-1) min(-1) for Hs Fd).
205 other RIC regimen demonstrated superiority, Fd/Bu/ATG should be considered as baseline in future pro
207 Ferredoxin-dependent glutamate synthase (Fd-GOGAT) plays a major role in photorespiration in Arab
209 here the rates differed for Hs and Sp target Fd's, suggesting distinct binding sites for binding of h
212 These results suggest that the C. tepidum Fd I and Fd II polypeptides each contain two bound [4Fe-
214 wo novel features of this work are: (1) that Fd levels achieved in transplastomic plants promote an a
222 this construction, genomic DNA encoding the Fd fragment of humanized anti-Fc gammaRI mAb, H22, which
223 vents the backflow of the electrons from the Fd reduction branch toward the FMN site, providing a bas
224 and an Fd-dependent Trx reductase (FTR), the Fd-FTR-Trxs system, which links redox regulation to ligh
227 he protein-protein interface involved in the Fd-Delta9D complex by the use of chemical cross-linking,
229 imately 2.6 and approximately 2.0 kBp of the Fd 5' and 3' flanking regions (pKO-FD-NEO) was introduce
231 pombe demonstrated that the identity of the Fd is less critical for promoting cluster transfer from
234 are present at these positions in all of the Fd-dependent nitrite reductase for which sequences are a
236 a specific intracellular target and once the Fd expression is repressed the activity of intracellular
237 5'-phosphate under conditions where only the Fd-binding affinity of the enzyme was affected and where
238 the parental strain, demonstrating that the Fd gene product eliminated in KO cells is neither necess
242 nd that the decreased et reactivity of these Fd mutants toward FNR may be due to small changes in the
243 Several minor structural adjustments in Tl Fd relative to other Fds, in addition to the third stran
247 se of mesophilic ferredoxins reveals that Tl Fd possesses the same secondary structural elements, two
248 To analyze the sites which contribute to Fd binding at the pFNRII N-terminal, three mutants were
249 nities of SBA and VML for Tn-PSM relative to Fd-PSM indicate the importance of carbohydrate compositi
252 equency domain optical coherence tomography (Fd-OCT) scans (Spectralis HRA+OCT; Heidelberg Engineerin
253 nit suggest that it evolved from an 8Fe-type Fd by the addition of approximately 40 residues at the N
254 ipapillary RNFL thickness was measured using Fd-OCT in 16 segments from 4 quadrants--temporal (316 de
255 d CEF is most required under conditions when Fd becomes overreduced and photosystem I is subjected to
257 and V(m) values in a coupled assay in which Fd was reduced by pyruvate ferredoxin oxidoreductase (PO
259 ficantly impaired in its et interaction with Fd at low FNR concentrations and low mu values, the depe
263 is not significantly altered from that of wt Fd (-384 mV), the potential of the C49S mutant (-329 mV)
264 the variants, the reduction potential of WT Fd makes it the most appropriate protein to both accept