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1 e proton T(1) values for a water-soluble DNA G-quadruplex.
2 onal spectra for several proteins and an RNA G-quadruplex.
3 specifically to human telomeric antiparallel G-quadruplex.
4 o distribute between a monomeric and dimeric G-quadruplex.
5 ires interaction of TRF2 with a p21 promoter G-quadruplex.
6 onic metallohelices with human telomeric RNA G-quadruplex.
7 able exons that contain splice site-proximal G-quadruplexes.
8 to switch between inter- and intramolecular G-quadruplexes.
9 e metabolites and functionality of the bound G-quadruplexes.
10 ed through RNA secondary structures known as G-Quadruplexes.
11 e property of individual human telomeric DNA G-quadruplexes.
12 telomeric G-quadruplex from other telomeric G-quadruplexes.
13 ains do not preferentially interact with DNA G-quadruplexes.
14 typical B-form DNA to single-stranded DNA to G-quadruplexes.
15 ution of, and replication through, telomeric G-quadruplexes.
16 structure-forming sequences, exemplified by G quadruplex and H-DNA motifs, across the genome in both
17 31 is a 31-nt DNA aptamer, consisting of the G-quadruplex and a duplex domain, which is able to effec
19 pregnanol derivatives that recognize the MYC G-quadruplex and BCL2 i-motif promoter DNA structures lo
20 sed RGG box-dependent binding to the SC1 RNA G-Quadruplex and is required for outgrowth of neurites.
21 , specificity is increased by targeting both G-quadruplex and its flanking duplex DNA in a naturally
22 ructures of (i) Pseudorabies virus (PRV) RNA G-quadruplex and ligand complex, (ii) PRV DNA G-quadrupl
24 These studies show that T-oligo can form a G-quadruplex and that the antitumor effects of T-oligo m
25 with a high affinity to human telomeric RNA G-quadruplex and that their binding selectivity consider
26 The modified 40-nt aptamer, with a stable G-quadruplex and two modified loops, exhibited a 100 tim
29 r cells, proved to be able to stabilize both G-quadruplexes and R loops and showed a potent cell kill
30 RGG domain of FMRP as important for binding G-quadruplexes and the transport of G-quadruplex-contain
34 -quadruplex and ligand complex, (ii) PRV DNA G-quadruplex, and (iii) an i-motif of human telomeric se
39 o any conformational form of human telomeric G-quadruplex (antiparallel, hybrid, parallel monomers or
40 ng assay for HBeAg, which takes advantage of G-quadruplex aptamers for enhanced binding and stability
48 ome-wide role in MiDAS at loci prone to form G-quadruplex-associated R-loops, in a process that is de
49 two guanine electron donors into crystalline G-quadruplex-based organic frameworks, wherein the elect
50 promising and desirable features to develop G-quadruplex binders as safe and effective anticancer ag
51 In the search for new drug-like selective G-quadruplex binders, a bioinspired design focused on th
53 tories finds that the Timeless protein has a G-quadruplex binding domain that works together with the
58 nical property of individual human telomeric G-quadruplexes bound to telomestatin, using optical twee
59 nvolve DNA synthesis: DNA replication across G-quadruplexes; break-induced replication; and processin
60 R can dramatically simplify the depiction of G-quadruplexes by automatically detecting G-tetrads and
63 altered mechanical anisotropy of the ligand-G-quadruplex complex can add additional level of regulat
65 servation that NONO preferentially binds the G-quadruplex conformation of G-rich C9orf72 repeat RNA,
73 to G-quadruplex motifs, and treatment with a G-quadruplex-disrupting small molecule causing dissociat
76 gh selectivity, and induced the formation of G-quadruplex DNA along with the related DNA damage respo
77 romoter activity of c-MYC gene that contains G-quadruplex DNA forming sequence in the upstream promot
78 elop a competitive screening method in which G-quadruplex DNA linked magnetic nanoparticles pull down
85 ticles (MNPs) as supporting matrix and hemin/G-quadruplex DNAzyme as signal amplifier for determinati
88 netic and biochemical analyses show that RNA G-quadruplex folding is able to regulate translation and
93 l approach allows separation of K(+)-induced G-quadruplex formation and subsequent refolding and prov
94 at stabilization of RNA sequences capable of G-quadruplex formation by metallohelices investigated in
97 in GTEx, suggesting that variants affecting G-quadruplex formation within UTRs may also contribute t
100 Our investigation has been performed for G-quadruplexes formed by folding of GGG(TTAGGG)3 single
101 cribe not only the basic structural motif of G-quadruplexes formed by, e.g., telomeric DNA sequences,
102 8-dihydroguanine ((oxo)G), and evaluated the G-quadruplex forming ability of such oligonucleotides.
103 The structure of the 68 nt sequence with G-quadruplex forming potential within the hTERT promoter
104 we confirmed their binding to pseudoknot and G-quadruplex forming RNAs as well as their ability to re
106 etic and genomic data, we show that putative G-quadruplex forming sequences (pG4) in 5' and 3' UTRs a
109 g an in vitro assay, we show that a putative G-quadruplex-forming sequence (PQFS) in the first intron
110 G-rich promoter element that is a potential G-quadruplex-forming sequence (PQS) in NEIL3 is a site f
112 experiments have identified a non-canonical G-quadruplex-forming sequence containing bulges within t
113 when OG is formed in guanine-rich, potential G-quadruplex-forming sequences (PQS) in promoter-coding
114 e porphyrin dyes are first attached to short G-quadruplex-forming sequences and then reacted with per
115 ultiple sequence alignments, we observe that G-quadruplex-forming sequences are a general feature of
120 plicing enhancer motifs and a propensity for G-quadruplex (G-Q) formation, linking the defective spli
122 reviously showed that CST binds and disrupts G-quadruplex (G4) DNA in vitro, suggesting that CST may
130 a structural transition of the sequence to a G-quadruplex (G4) fold that positions the AP in a loop f
131 , oxidation sensitivity and a propensity for G-quadruplex (G4) folding, both of which depend upon seq
139 opensity to adopt four-stranded tetrahelical G-quadruplex (G4) structures that are overrepresented in
140 e (G), but G-rich DNA can form four-stranded G-quadruplex (G4) structures, which plays important role
152 binds directly with DNA guanine quadruplex (G quadruplex, G4) structures in vitro and in cells, whic
153 r complex (Pt-DA) has been incorporated into G-quadruplex G4K(+) borate hydrogels by using borate est
154 Noncanonical tetrahelical nucleic acids, G-quadruplexes (G4Q), and i-motifs have been shown to pl
164 now exists to support that formation of DNA G-quadruplexes (G4s) is coupled to altered gene expressi
169 -rich telomere DNA repeats readily fold into G-quadruplex (GQ) structures in vitro, and the presence
171 d biophysical characterization of folding of G-Quadruplex (GQ)-based light-up aptamers such as Spinac
176 can fold into noncanonical structures called G-quadruplexes (GQs), which exhibit a common stem struct
177 The structural and topological diversity of G-quadruplexes have attracted great attention for decade
181 enanthrene, dppz=dipyridophenazine) bind DNA G-quadruplex in an enantiospecific manner that parallels
183 with strong G/C skew and propensity to form G-quadruplex in non-template DNA, corroborating with all
191 k for further investigation into the role of G-quadruplexes in paraspeckle formation and function.
196 plicational or co-transcriptional folding of G-quadruplex inside the polymerase machinery in cells.
197 x ligands and then used with a new series of G-quadruplex interactive bis-triazolyl ligands that are
198 The complex folding energy landscape of DNA G-quadruplexes leads to numerous conformations for this
200 r basis for the retention of potency by this G-quadruplex ligand has been examined using whole transc
201 ing agents, and that the cytotoxicity of the G-quadruplex ligand pyridostatin involves trapping topoi
202 wed the identification of a highly selective G-quadruplex ligand that, when studied in human cancer c
205 ening strategy is first optimized with known G-quadruplex ligands and then used with a new series of
207 lity to perform high-throughput screening of G-quadruplex ligands for the development of drug molecul
208 RNAs that have structured 5' UTRs (including G-quadruplexes), many of which are involved in signal tr
209 les such as gold (Au)-carbene that stabilize G-quadruplexes may also interfere with the elongation of
210 n of G-rich C9orf72 repeat RNA, we find that G-quadruplex motifs are abundant and conserved features
211 ctural specificity and provide evidence that G-quadruplex motifs mediate NONO-NEAT1 association, with
212 ding sites on NEAT1 corresponding largely to G-quadruplex motifs, and treatment with a G-quadruplex-d
213 validated TRF2 occupancy at several promoter G-quadruplex motifs, which did adopt quadruplex forms in
214 upon binding as a doublet to one side of the G-quadruplex, much larger translational and orientationa
215 gand, BMPQ-1, which bound to human telomeric G-quadruplex multimers over monomeric G-quadruplexes wit
216 esses occurring at specific locations within G-quadruplex nucleic acids, providing valuable probes fo
219 ural features of the experimentally observed G-quadruplexes (OQs), highlighting differences in their
220 far the work was limited to the colorimetric G-quadruplex or fluorescent substrate cleaving NAzymes.
221 ed RNA, double-helical DNA, Pauling triplex, G-quadruplex, or DNA structures 'decorated' with protein
222 is introduced in differentiating multimeric G-quadruplexes over monomeric species, which would be ab
223 d grooves of the Oxytricha nova's telomeres' G-quadruplex ( Oxy-GQ), in agreement with high-resolutio
224 similar size have the capability of binding G-quadruplexes, potentially affecting the expression of
225 nism of hTERT epigenetic control involving a G-quadruplex promoter motif, which potentially can be ta
226 uggest that genetic variation is enriched in G-quadruplex regions that impede mitochondrial DNA repli
228 inally in syn or anti in nonsubstituted hTel G-quadruplex requires a minor structural rearrangement o
229 phaeline as small molecules that disrupt RNA G-quadruplexes, resulting in inhibition of G-quadruplex-
230 oscopy reveals that excitation of TDI in the G-quadruplex results in symmetry-breaking charge separat
232 reveals different binding landscapes of RNA G-quadruplex (rG4) structures-binding proteins and disco
235 a three-layered intramolecular (3+1) hybrid G-quadruplex scaffold, in which three strands are orient
236 ress this question, we studied two different G-quadruplexes, selecting a single conformation by block
237 enables the identification of c-MYC and BCL2 G-quadruplex selective bis-triazole ligands that specifi
238 t these transcripts contain an enrichment of G-quadruplex sequences in their 3' UTRs, suggesting that
239 Herein, we employ an improved version of a G-quadruplex sequencing method (G4-seq) to generate whol
240 e results are supportive of the concept that G-quadruplex small molecules such as CM03 have potential
249 binding of POT1 to an initially folded 24 nt G-quadruplex structure is four orders of magnitude slowe
251 DI self-assembles into a nearly monodisperse G-quadruplex structure of 16 layers, with strong pai-ove
252 nding capability caused by (oxo)G, a loss of G-quadruplex structure was observed for most oligonucleo
253 tive chemical targeting of the non-canonical G-quadruplex structure within the PARP1 promoter, which
254 two complexes, both comprised of a (4n - 1) G-quadruplex structure, one bound to a linear dinucleoti
255 in aqueous-media, which first implements the G-quadruplex structure-switching biosensing principle in
261 G-quadruplex in vivo and indicates that RNA G-quadruplex structures act as important regulators of p
262 gues of a lead which was proved to stabilize G-quadruplex structures and increase R loop levels in hu
264 profiling, we determine that hundreds of RNA G-quadruplex structures are strongly folded in both Arab
269 ediether (Sd) hole acceptor separated by DNA G-quadruplex structures possessing 2-to-4 tetrads by mea
278 they also demonstrated a strong and specific G-quadruplex targeting strategy by conjugating highly sp
279 selective artificial nucleases that degrade G-quadruplex telomeric DNA and exhibit selective DNA bin
281 , LOTUS domains exhibit high affinity to RNA G-quadruplex tertiary structures implicated in diverse c
282 hairpin (HP) probes, molecular beacons, and G- quadruplex) that mediate cyclic cascade and role of h
283 ed the conformational ensemble of multimeric G-quadruplexes towards (3+1) hybrid-2 topology, which be
285 that includes equilibrium constants for both G-quadruplex unfolding and POT1 binding to the resultant
287 ures a structure with three stacked parallel G-quadruplex units, while another features an unusual du
288 ogenous ribonucleoprotein A1 (hnRNP A1) as a G-quadruplex-unwinding helicase, which unfolds these sta
291 -beta gene promoter sequence forms a vacancy G-quadruplex (vG4) which can be filled in and stabilized
292 Introducing the term 'clustered damage to G-quadruplexes' we report here on the structural effects
293 molecular mechanism of Au-carbene binding to G-quadruplexes, we employed molecular dynamics simulatio
294 etrad planes changes the conformation of the G-quadruplex, which resembles a balloon squeezed in cert
296 induce targeted mechanical unfolding of the G-quadruplex while leaving the nanocage unperturbed.
297 However, the design of probes recognizing a G-quadruplex with high selectivity in vitro and in vivo
298 omeric G-quadruplex multimers over monomeric G-quadruplexes with high selectivity, and induced the fo
299 thermore, we determine that NONO binds NEAT1 G-quadruplexes with structural specificity and provide e