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1 GAA expansions were evaluated by polymerase chain reacti
2 GAA induces antioxidative response and inhibits accumula
3 GAA maturation increases its affinity for glycogen by 7-
4 GAA peptide vaccination in children with gliomas is gene
5 GAAs for these peptides are EphA2, interleukin (IL)-13 r
6 GAAs were EphA2, interleukin-13 receptor alpha 2 (IL-13R
7 mic DNA were noted with Cervista (P=0.0015), GAA treatment had no significant effects on Aptima HPV s
8 epeats in the frataxin (FXN) gene: every 100 GAA repeats on the smaller repeat allele was associated
13 s a molecular model of FRDA by inserting 560 GAA*TTC repeats into an intron of a GFP reporter minigen
14 individuals are compound heterozygous for a GAA expansion and a FXN point/insertion/deletion mutatio
15 ed in almost all cases by homozygosity for a GAA trinucleotide repeat expansion in the frataxin gene.
17 FRDA patients, 26 heterozygous carriers of a GAA expansion, and 53 controls underwent oral and intrav
19 N) that results from low FXN levels due to a GAA triplet repeat expansion or, occasionally, from miss
22 afirin was dissolved in glacial acetic acid (GAA) and simple coacervation was performed by rapid addi
23 mpounds and identified gossypol acetic acid (GAA) as a potent inhibitor of oxidative stress-induced R
24 s can be facilitated by glacial acetic acid (GAA) treatment of primary liquid-based collections to re
25 cytology processing and glacial acetic acid (GAA) treatment, may occur prior to the arrival of specim
26 thermal properties of guanidinoacetic acid (GAA) and its aqueous solutions have been performed to te
27 us expansion of the guanine-adenine-adenine (GAA) repeats in intron 1 of the FXN gene leading to tran
30 cific gene subset enriched for AAA, CAA, and GAA codons is impaired in the absence of URM1- and ELP-d
32 t tracts (CTG)n, (CAG)n, (CGG)n, (CCG)n and (GAA)n, are associated with diseases including myotonic d
34 analysis in 21 children showed positive anti-GAA immune responses in 13: to IL-13Ralpha2 in 10, EphA2
35 etic peptides for glioma-associated antigen (GAA) epitopes and administration of polyinosinic-polycyt
36 DC1s loaded with glioma-associated antigen (GAA)-derived CTL epitope peptides prolonged the survival
37 fied a series of glioma-associated antigens (GAAs) commonly overexpressed in pediatric gliomas, we in
44 originated from naturally occurring DSBs at (GAA)n microsatellites in Saccharomyces cerevisiae These
46 cribe an experimental system to characterize GAA repeat contractions in yeast and to conduct a geneti
48 was not dependent on the presence of 12-copy GAA trinucleotide repeats in the promoter region and did
50 the two hybrid duplexes [r(GAA):d(TTC) and d(GAA):r(UUC)] in an R-loop; and three hybrid triplexes th
51 .d(GAA):r(UUC) is unstable, while parallel d(GAA).r(GAA):d(TTC) and d(GA+A).r(GAA):d(TTC) are stable.
52 he collapsed R-loops, antiparallel d(TTC+).d(GAA):r(UUC) is unstable, while parallel d(GAA).r(GAA):d(
54 orodiamidate morpholino oligomers to enhance GAA exon 2 inclusion in the mature mRNA of patients with
58 ataxia (FRDA) are homozygous for an expanded GAA triplet repeat (GAA-TR) mutation in intron 1 of the
59 reich ataxia (FRDA) is caused by an expanded GAA triplet-repeat (GAA-TR) mutation in the FXN gene.
60 t inherited ataxia, is caused by an expanded GAA triplet-repeat sequence in intron 1 of the FXN gene.
61 ure and formation of triplex DNA at expanded GAA TTC repeats have been shown to regulate the FXN gene
62 Among 133 patients homozygous for expanded GAA repeats, the mean (SD) age was 31 (10) years (age ra
64 ence of heterochromatin at the long expanded GAA TTC repeats, which is enriched in hypoacetylated his
65 We demonstrate that the presence of expanded GAA repeats recapitulates the epigenetic modifications a
67 a model system, we demonstrate that expanded GAA/TTC repeats represent a threat to eukaryotic genome
70 pressive chromatin spreads from the expanded GAA triplet-repeat sequence to cause epigenetic silencin
71 r objective was to test whether the expanded GAA triplet-repeat sequence undergoes further expansion
72 both upstream and downstream of the expanded GAA triplet-repeat sequence, without any change in trans
74 ive epigenetic modifications at the expanded GAA-FXN locus may lead to NL relocation, where further r
75 pressive chromatin extends from the expanded GAA-TR in intron 1 to the upstream regions of the FXN ge
79 eam (R(2) = 0.89, p = 0.002) of the expanded GAA-TR mutation, suggesting that FXN promoter silencing
83 om deficient elongation through the expanded GAA-TR sequence because of repeat-proximal heterochromat
85 disease caused by the presence of expanded (GAA)(n) repeats in the first intron of the FXN gene [V.
86 hile it is generally believed that expanded (GAA)n repeats block transcription elongation, fine mecha
87 We examined instability of the expanded (GAA*TTC)(n) sequence in mammalian cells by analyzing ind
88 mouse and a transgenic line (MTP) expressing GAA only in skeletal muscle, as well as a detailed analy
89 no-associated virus (AAV)9 vector expressing GAA (AAV9-hGAA) into the tibialis anterior muscle of Gaa
90 ere we describe the development of the first GAA-expanded FXN genomic DNA reporter model of FRDA.
91 ulfite sequence analysis of the FXN flanking GAA regions reveals a shift in the FRDA DNA methylation
92 esults, 21.9% reverted to negative following GAA treatment; the correlate value was 2.7% for Aptima H
96 ough yeast and reporter construct models for GAA.TTC triplet-repeat expansion have been reported, stu
109 acterized by lack of acid-alpha glucosidase (GAA) resulting in ubiquitous lysosomal glycogen accumula
110 ng lysosomal enzyme acid alpha -glucosidase (GAA) (also called "acid maltase"), causes death in early
111 n-hydrolyzing enzyme acid alpha-glucosidase (GAA) activity, which results in lysosomal glycogen accum
112 er and kidney, while acid alpha-glucosidase (GAA) deficiency in GSD II causes primarily muscle diseas
113 acement therapy with acid alpha-glucosidase (GAA) has achieved only partial efficacy in Pompe disease
114 aded in lysosomes by acid alpha-glucosidase (GAA) in mammals, but it is unclear why and how glycogen
116 the lysosomal enzyme acid alpha-glucosidase (GAA) with recombinant GlcNAc-phosphotransferase and unco
117 ysosomal delivery of acid alpha-glucosidase (GAA), the enzyme deficient in patients with Pompe diseas
119 acement therapy with acid alpha-glucosidase (GAA), which has been attributed to inefficient cation-in
122 hment and concentration of guanidinoacetate (GAA) and creatine in plasma sample for kinetic studies i
124 g sequence unaffected and (iii) heterozygous GAA*TTC expansion carriers with approximately 50% decrea
131 surrounding the cleavage site revealed human GAA contains histidine at 201 while other species contai
133 e-mRNA at a region upstream of hyperexpanded GAA repeats in FRDA and control cells, indicating simila
134 ein, we analyze the effects of hyperexpanded GAA repeats on transcription status and chromatin modifi
135 modifications associated with hyperexpanded GAA repeats are independent of initiation and progressio
140 he lack of effectiveness from clenbuterol in GAA-KO mice that lacked CI-MPR in muscle, where it faile
141 IR showed that when kafirin was dissolved in GAA its alpha-helical conformation increased substantial
143 de (Glc4), a urinary biomarker, was lower in GAA-KO mice following combination therapy, compared with
144 Dissociation of the kafirin molecules in GAA, assuming a alpha-helical conformation may have enha
145 urther characterized the role of MutSbeta in GAA.TTC expansion using a functional assay in primary FR
148 RNA.DNA hybrids have a potential role in GAA.TTC tract instability and in the mechanism underlyin
149 tudy demonstrated that knockdown of Stbd1 in GAA knock-out mice did not alter lysosomal glycogen stor
151 to bind and thermostabilize GAA and increase GAA translocation to lysosomes in both wild-type and Pom
153 rited ataxia caused primarily by an intronic GAA.TTC triplet repeat expansion in the frataxin (FXN) g
158 In most Friedreich ataxia patients, a large GAA-repeat expansion is present within the first intron
159 riedreich's ataxia (FRDA) is caused by large GAA expansions in intron 1 of the frataxin gene (FXN), w
160 we show increased levels of the full-length GAA transcript, acid-alpha-glucosidase protein, and enzy
174 s most effective, whereas late correction of GAA expression was not effective in modifying parameters
176 n of this GC 5'ss required a high density of GAA/CAA-containing splicing enhancers in the exonized se
179 It was found that isotopic enrichment of GAA reached a plateau by 30min of infusion of [1-(13)C]g
181 a (FRDA) is caused by biallelic expansion of GAA repeats leading to the transcriptional silencing of
183 We found that the rates of expansions of GAA repeats increased exponentially with their lengths.
184 ataxia (FRDA) is caused by hyperexpansion of GAA*TTC repeats located in the first intron of the FXN g
185 ty of an Aptima HPV result is independent of GAA treatment and routine automated cytology processing.
187 r lysosomal glycogen content to the level of GAA knock-out mice, as did a mutant lacking the Atg8 fam
192 was inversely correlated with the number of GAA repeats in the frataxin (FXN) gene: every 100 GAA re
195 type correction, specifically restoration of GAA to skeletal muscle and the nervous system for treatm
196 were estimated and discussed in the scope of GAA self-aggregation in aqueous solutions using experime
197 ated uptake and intracellular trafficking of GAA during muscle-specific GAA expression with an adeno-
198 ed CI-MPR-mediated uptake and trafficking of GAA in mice with Pompe disease, and a similarly enhanced
199 lenbuterol treatment enhanced trafficking of GAA to lysosomes, given that GAA was expressed within my
203 lyzing the formation of nucleosome arrays on GAA TTC-containing plasmids, the triplex structure was s
206 brain, cerebellum and heart tissues from our GAA repeat expansion-containing FRDA YAC transgenic mice
208 FXN, there are a number of other polymorphic GAA/TTC loci in the human genome where the size variatio
210 and TTC strands; the two hybrid duplexes [r(GAA):d(TTC) and d(GAA):r(UUC)] in an R-loop; and three h
212 mozygous for an expanded GAA triplet repeat (GAA-TR) mutation in intron 1 of the FXN gene, which resu
214 ormation drives a short purine-rich repeat, (GAA)(10), to become a replication impediment that engage
216 emonstrate that AAV9-hGAA is able to replace GAA to the affected tissue and modify AChR mRNA expressi
217 vely enables transcription across repressive GAA repeats that silence frataxin expression in Friedrei
220 c expansions of the triplet-repeat sequence (GAA.TTC) cause transcriptional repression of the Frataxi
222 ion, the DNA sequence of the CudA half site, GAA, is identical to metazoan STAT half sites, although
223 XN gene (pBAC-FXN-Luc) and replacing the six GAA repeats present in the vector with an approximately
224 nt on smaller, so-called 'pre-mutation' size GAA.TTC repeats, that do not cause disease, but are pron
226 ar trafficking of GAA during muscle-specific GAA expression with an adeno-associated virus (AAV) vect
229 ontain a conserved 10-bp motif (GAAAAG(C)/(T)GAA), and that deletion of these repeats results in a lo
231 the lysosome, the mature form of GILT-tagged GAA was indistinguishable from rhGAA and persisted with
234 because synthetic nucleic acids that target GAA repeats can be lead compounds for restoring curative
236 nst at least one of the vaccination-targeted GAAs in peripheral blood mononuclear cells in 58% of pat
237 ecific pyrrole-imidazole polyamide targeting GAA.TTC triplet-repeat DNA partially blocked repeat expa
240 nd solubility measurements, it is found that GAA is more thermally stable but less soluble comparing
243 with and without GAA treatment, we show that GAA treatment significantly reduces genomic DNA content
244 r localization in single cells, we show that GAA-expanded repeats decrease the number of FXN mRNA mol
245 late greatly increases the probability that (GAA)(n) repeats contract, which in turn promotes repeat
247 measurements for the GAA TTC duplex and the GAA GAA TTC triplex, and on the effect of histone acetyl
248 NAs derived from the human FXN gene, and the GAA GAA TTC triplex, were examined for their ability to
251 compelling evidence for the link between the GAA expansion, the DNA methylation profile, FXN expressi
253 order structure as a fragment containing the GAA-repeat expansion showed an increased interaction fre
255 Nase I accessibility in regions flanking the GAA repeats in patients was decreased compared with heal
256 oval of the repressed chromatin flanking the GAA tract might contribute to rescue FXN total expressio
257 he first direct binding measurements for the GAA TTC duplex and the GAA GAA TTC triplex, and on the e
258 Pompe disease is caused by mutations in the GAA gene, resulting in deficient lysosomal acid-alpha-gl
259 in CAG.CTG repeat expansion, its role in the GAA.TTC expansion of Friedreich ataxia (FRDA) is less cl
260 lation of specific CpG sites upstream of the GAA repeat and histone modifications in regions flanking
268 nor the effect of histone acetylation on the GAA TTC duplex or the GAA GAA TTC triplex has been measu
270 ompared to the pUC control DNA) and that the GAA GAA TTC triplex further lowers the nucleosome assemb
271 reconstitution assays demonstrated that the GAA TTC duplex excludes nucleosomes (53% decrease compar
272 his comprehensive analysis revealed that the GAA-induced silencing effect does not influence expressi
273 led with high-throughput sequencing that the GAA-repeat expansion in FRDA cells stimulates a higher-o
275 er the gene expression signatures due to the GAA.TTC repeat expansion in FRDA neuronal cells and the
276 othesis is that structures formed within the GAA.TTC repeat during transcription attract DNA repair e
277 scular disorder caused by expansions of the (GAA)n repeat in the first intron of the frataxin gene.
278 hypothesized that genetic stability of the (GAA*TTC)n sequence may require efficient RecA-dependent
279 of replication is known to occur within the (GAA*TTC)n sequence when GAA is the lagging strand templa
280 bitors are shown to bind and thermostabilize GAA and increase GAA translocation to lysosomes in both
281 xon of the B19V pre-mRNA is defined by three GAA motif-containing exonic splicing enhancers and a G/G
284 rate in vitro and large-scale trinucleotide (GAA)n repeat expansions in vivo, implying failed phospha
285 to analyze large-scale expansions of triplet GAA repeats responsible for the human disease Friedreich
291 ted significantly increased instability when GAA was the lagging strand template in strains that were
292 to occur within the (GAA*TTC)n sequence when GAA is the lagging strand template, we hypothesized that
294 d in Escherichia coli are more unstable when GAA is the lagging strand template, suggesting erroneous
296 e DNA triplexes that could be assembled with GAA and TTC strands; the two hybrid duplexes [r(GAA):d(T
297 age and by 60% at 13 months as compared with GAA knock-out mice, indicating that the transport of gly
298 ilot study of subcutaneous vaccinations with GAA epitope peptides in HLA-A2-positive children with ne
299 med on 465 tandem specimens with and without GAA treatment, we show that GAA treatment significantly