ライフサイエンスコーパス: Geobacter

1 n a 2-coordinated Hg(Mem-RS)(2) structure in Geobacter.

2 availability of Fe(III) and the abundance of Geobacter.

3 Chlorinated ethene concentrations and Geobacter 16S rRNA gene copy numbers were measured.

4 ng, shows that bacteria related to the genus Geobacter, a known and commonly found ARB, dominate only

5 +/- 0.1, and 25.6 +/- 0.1, respectively, for Geobacter and 39.2 +/- 0.2, 38.2 +/- 0.1, and 25.7 +/- 0

6 osts a large population of current-producing Geobacter and attains a current density of 3 mA cm(-2) s

7 cteraceae into two subgroups, designated the Geobacter and Desulfuromonas clusters.

8 In this study, Geobacter and Pelosinus, two metal reducing species, are

9 wledgebase for understanding and engineering Geobacter and similar species.

10 re selective to electroactive microbes (e.g. Geobacter) and more conducive for electroactive biofilm

11 genesis from dominant fermentative bacteria, Geobacter, and Methanobacterium.

12 s and were dominated by Deltaproteobacteria, Geobacter, and to a lesser extent, Clostridia, while low

13 icroorganisms (and relative abundances) were Geobacter anodireducens (89.3%) and Thauera sp. (5.5%).

14 Then, an enrichment culture dominated by Geobacter anodireducens could indirectly reduce a broad

15 ceptors and chemotaxis-like gene clusters of Geobacter appear to be responsible for a diverse set of

16 Geobacter appeared to be the predominant genus, whose gr

17 ntrophic interactions between fermenters and Geobacter at the anode and ferementers and hydrogenotrop

18 Geobacter bacteria are able to transfer electrons to the

19 tu stimulation of Fe(III) oxide reduction by Geobacter bacteria leads to the concomitant precipitatio

20 ere are multiple types of redox cofactors in Geobacter biofilms spanning a range in oxidation potenti

21 twork of extracellular appendages similar to Geobacter biofilms.

22 zed with this capability were Shewanella and Geobacter, both reported to couple their growth to the r

23 The biohybrid electrode containing Geobacter can also catalyze the reduction of soluble fum

24 Here we find that the wild-type Geobacter CcP is indeed similar electrochemically to the

25 ntrast, the enhanced decay model predicted a Geobacter cell density that was too low to allow recover

26 amount of current generated by an individual Geobacter cell in the absence of a biofilm and highlight

27 ulation densities (4.0 x 10(5) to 4.0 x 10(7)Geobacter cells.mL(-1)).

28 28 and sigma54 play a role in regulating the Geobacter chemotaxis gene expression.

29 The probable functions of some Geobacter clusters are assignable by homology to known p

30 like the single gene cluster of E. coli, the Geobacter clusters are not all located near the flagella

31 monstrate a previously unrecognized role for Geobacter conductive pili in the extracellular reduction

32 Members of the genera Geobacter, Desulfuromonas, Pelobacter, and Desulfuromusa

33 inally, the regulation of gene expression in Geobacter differs from E. coli.

34 nes, while Fe(III) reducers (e.g., Geothrix, Geobacter) dominated the deep, anoxic zone.

35 cent discovery of a novel species Candidatus Geobacter eutrophica with the genetic potential of IHT a

36 16S-rDNA and -rRNA sequences showed that the Geobacter genus was less than 30% of the community of th

37 angstrom-resolution crystal structure of the Geobacter Hypr GGDEF domain was determined to understand

38 pili all appear important for the growth of Geobacter in changing environments and for electricity p

39 eatment include Legionella, Escherichia, and Geobacter in the lab-scale system and Mycobacterium, Sph

40 limit of microbial fuel cell performance for Geobacter in thin biofilms.

41 The growth of FeRB (e.g., Geobacter) is stimulated under anaerobic conditions in t

42 ted samples revealed the rapid enrichment of Geobacter-like environmental strains with strong similar

43 The environmental bacterium Geobacter lovleyi has recently been recognized as a key

44 g Dehalococcoides mccartyi (Dhc) strains and Geobacter lovleyi strain SZ (GeoSZ), or inoculated with

45 -3.6 per thousand +/- 0.1 per thousand with Geobacter lovleyi strain SZ; -9.1 per thousand +/- 0.6 p

46 ntact cells of Sulfurospirillum multivorans, Geobacter lovleyi, Desulfuromonas michiganensis, Desulfi

47 c Methanothrix concilii, and exoelectrogenic Geobacter lovleyi, were successfully recovered for the r

48 we report that a bacterial SMUG1 ortholog in Geobacter metallireducens (Gme) and the human SMUG1 enzy

49 Geobacter metallireducens also reduced RDX with and with

50 that laboratory evolution of a coculture of Geobacter metallireducens and Geobacter sulfurreducens m

51 mechanisms in the syntrophic association of Geobacter metallireducens and Geobacter sulfurreducens.

52 Crystal structures of PelC from Geobacter metallireducens and Paraburkholderia phytofirm

53 by the electrosyntrophic interaction between Geobacter metallireducens and Rhodopseudomonas palustris

54 enoyl-coenzyme A intermediate as observed in Geobacter metallireducens and Syntrophus aciditrophicus.

55 lity and key enabling metabolic machinery of Geobacter metallireducens GS-15 to carry out CO2 fixatio

56 Six bacterial genomes, Geobacter metallireducens GS-15, Chromohalobacter salexi

57 GHI](2) complex from the anaerobic bacterium Geobacter metallireducens harboring 4 tungsten, 4 zinc,

58 The triheme c-type cytochrome PpcA from Geobacter metallireducens plays a crucial role in bridgi

59 Geobacter metallireducens specifically expresses flagell

60 investigated in resting cell suspensions of Geobacter metallireducens strain GS-15, a model Fe(III)-

61 inone-2,6-disulfonate (AH2QDS), (ii) resting Geobacter metallireducens strain GS-15, and (iii) a comb

62 The strictly anaerobic bacterium Geobacter metallireducens uses the class II benzoyl-CoA

63 Cells of Geobacter metallireducens were added in the presence and

64 GAC, they stimulated DIET in co-cultures of Geobacter metallireducens with Geobacter sulfurreducens

65 trons from electron donating organisms (eg., Geobacter metallireducens) to electron accepting organis

66 Here we report that another Fe(III)-reducer, Geobacter metallireducens, has an alternative strategy f

67 Using the exoelectrogenic nitrate reducer Geobacter metallireducens, the critical conditions contr

68 An orthologous frdCAB operon was present in Geobacter metallireducens, which cannot grow with fumara

69 Geobacteraceae, Geobacter sulfurreducens and Geobacter metallireducens.

70 inant Geobacter species enriched belonged to Geobacter metallireducens.

71 g-range extracellular electron transport via Geobacter nanowires, and what mechanisms control this re

72 ll bodies, similar to the reported length of Geobacter nanowires.

73 After three batches of enrichment, Geobacter OTU650, which was phylogenetically close to Ca

74 lization of essential cytochromes beyond the Geobacter outer membrane.

75 aining the observed conductive properties of Geobacter pili are a valuable tool to guide further inve

76 ltistep hopping as the mechanism that allows Geobacter pili to function as protein nanowires between

77 ment, theoretical energy-minimized models of Geobacter pili were constructed with a previously descri

78 eterologously expressed abundant, conductive Geobacter pili when grown aerobically in liquid culture.

79 em, we monitored a carbon-stimulated in situ Geobacter population while iron reduction was occurring,

80 ntity, and 2) all biofilms were dominated by Geobacter populations, but the composition of -CH3-assoc

81 easurements suggest high carbon flux through Geobacter respiratory pathways, and the synthesis of ana

82 ) oxide reduction requires the expression of Geobacter's conductive pili, we evaluated their contribu

83 fferential gene expression analysis revealed Geobacter's transcriptional regulations to express more

84 enzyme from Geobacter sulfurreducens and the Geobacter S134P/V135K double mutant, which have been sho

85 SAPs based on 16S rRNA gene sequencing were Geobacter, Smithella and Syntrophobacter, but their rela

86 pathways; others appear to be unique to the Geobacter sp. and contain genes of unknown function.

87 The biofilm was predominantly composed by Geobacter sp. at both experimental conditions.

88 Here, we describe the isolation of a new Geobacter sp. strain Cd1 from a Cd-contaminated field si

89 the very few prokaryotic Dnmt2 homologs from Geobacter species (GsDnmt2) was investigated.

90 nterspecies electron transfer (DIET) between Geobacter species and Methanosaeta species is an alterna

91 nities, the direct electron exchange between Geobacter species and Methanosaeta species might be an i

92 Geobacter species are delta-Proteobacteria and are often

93 Geobacter species are key members of the microbial commu

94 Geobacter species are of great interest for environmenta

95 the electrically conductive pili (e-pili) of Geobacter species are of interest because of the importa

96 been studied in defined cocultures in which Geobacter species are one of the DIET partners.

97 n (FISH) further confirmed that the dominant Geobacter species enriched belonged to Geobacter metalli

98 OmcZ nanowires produced by Geobacter species have high electron conductivity (>30 S

99 ached to the electrically conductive pili of Geobacter species in a manner reminiscent of the associa

100 Geobacter species often play an important role in biorem

101 Geobacter species play an important role in the natural

102 Geobacter species play important roles in bioremediation

103 insoluble electron acceptor may explain why Geobacter species predominate over other Fe(III) oxide-r

104 nt new insights into the mechanisms by which Geobacter species regulate their central metabolism unde

105 P in numerous Deltaproteobacteria, including Geobacter species that use extracellular insoluble metal

106 Extracellular electron transfer by Geobacter species through surface appendages known as mi

107 The ability of Geobacter species to fix atmospheric nitrogen is an impo

108 ed motility is considered to be critical for Geobacter species to locate fresh sources of Fe(III) oxi

109 Pyrosequencing analysis revealed that Geobacter species were significantly enriched with elect

110 on end products by exoelectrogens (typically Geobacter species) relieves feedback inhibition for the

111 ic compounds coupled to Fe(III) reduction in Geobacter species, but Fe(III) reduction with NADPH as t

112 -reducing bacteria, including Shewanella and Geobacter species, can reduce a wide range of high valen

113 To better understand physiology of Geobacter species, expression and function of citrate sy

114 The fgrM gene in the most studied strain of Geobacter species, Geobacter sulfurreducens strain DL-1,

115 t is important for organic acid oxidation in Geobacter species, was investigated.

116 Geobacter species, which are the predominant Fe(iii) red

117 regulators for flagellar gene expression in Geobacter species.

118 ears to control flagellar gene expression in Geobacter species.

119 ved in biosynthesis and energy generation in Geobacter species.

120 diated by metal-reducing bacteria, including Geobacter species.

121 e DIET by means of bioelectric enrichment of Geobacter species.

122 rrent state of knowledge from Shewanella and Geobacter, specifically focusing on transfer across the

123 led by multiple loci not commonly studied in Geobacter spp.

124 e growth of targeted iron reducing bacteria, Geobacter spp.

125 ould complement targeted knockout studies in Geobacter spp. and identify novel genes involved in this

126 ependent AOM in a biofilm anode dominated by Geobacter spp. and Methanobacterium spp. using carbon-fi

127 Geobacter spp. can acquire energy by coupling intracellu

128 In this study, we confirm that 6-week-old Geobacter spp. dominated biofilms are by far more active

129 e and stable in AD-effluents than 3-week-old Geobacter spp. dominated biofilms.

130 N2 and not facultative nitrate reduction by Geobacter spp. might be the primary response to perturba

131 bacterium spp. may work synergistically with Geobacter spp. to allow AOM, likely by employing interme

132 (13) C-acetate selected for ArrA related to Geobacter spp. whereas (13) C-lactate selected for ArrA

133 AD effluents on the performance of pre-grown Geobacter spp.-dominated biofilm anodes.

134 e an immediate influence on the stability of Geobacter spp.-dominated biofilms and may limit their pr

135 Holocene sediment was dominated by different Geobacter spp.-related 16S rRNA sequences.

136 wo methyl-accepting chemotaxis proteins from Geobacter sulfurreducens (encoded by genes GSU0935 and G

137 -like conductivity in films of the bacterium Geobacter sulfurreducens and also in pilin nanofilaments

138 nserved among two species of Geobacteraceae, Geobacter sulfurreducens and Geobacter metallireducens.

139 cens) to electron accepting organisms (e.g., Geobacter sulfurreducens and Methanosarcina barkeri).

140 Electroactive bacteria such as Geobacter sulfurreducens and Shewanella onedensis produc

141 synergistic metabolisms of the exoelectrogen Geobacter sulfurreducens and the bacterium Clostridium c

142 lysis cell (MEC) driven by the exoelectrogen Geobacter sulfurreducens and the CBP bacterium Cellulomo

143 ly PFV to the recently described enzyme from Geobacter sulfurreducens and the Geobacter S134P/V135K d

144 By using the FeRB Geobacter sulfurreducens and the SRB Desulfovibrio desul

145 Type IV pili of Geobacter sulfurreducens are composed of PilA monomers a

146 ffort to mimic the T4P of the metal-reducing Geobacter sulfurreducens bacterium led to the design of

147 llular filaments in anaerobic bacteria, with Geobacter sulfurreducens being used as a model system.

148 Here we show that Geobacter sulfurreducens binds PilA-N to PilA-C to assem

149 Electricity generation by Geobacter sulfurreducens biofilms grown on electrodes in

150 with excess H(2), Shewanella oneidensis and Geobacter sulfurreducens both solubilized <0.001% of 0.5

151 Deletion of two homologous Geobacter sulfurreducens c-type cytochrome genes, omcG a

152 ale protein wires harvested from the microbe Geobacter sulfurreducens can generate continuous electri

153 Crude extracts of Geobacter sulfurreducens catalyzed the NADPH-dependent r

154 th medium to co-form the anodic biofilm with Geobacter sulfurreducens cells.

155 Geobacter sulfurreducens contains a 9.6-kDa c-type cytoc

156 The genome of Geobacter sulfurreducens contains a gene designated rel(

157 The genome of Geobacter sulfurreducens contains three genes whose sequ

158 e we report that a pilus-deficient mutant of Geobacter sulfurreducens could not reduce Fe(iii) oxides

159 Geobacter sulfurreducens did not require citrate synthas

160 ngle-bacterium level current measurements of Geobacter sulfurreducens DL-1 to elucidate the fundament

161 t, for the first time, SERS of the bacterium Geobacter sulfurreducens facilitated by colloidal gold p

162 tum rate theory with a discussion focused on Geobacter sulfurreducens films as a reference standard o

163 crofluidic reactor that physically separates Geobacter sulfurreducens from the Mn(IV) mineral birness

164 The Geobacter sulfurreducens genome was found to contain a 1

165 structural and operational annotation of the Geobacter sulfurreducens genome.

166 d their contribution to uranium reduction in Geobacter sulfurreducens grown under pili-inducing or no

167 Transposon insertions in Geobacter sulfurreducens GSU1501, part of an ATP-depende

168 EET of Geobacter sulfurreducens has been extensively studied an

169 nome sequences for Shewanella oneidensis and Geobacter sulfurreducens has provided numerous new biolo

170 Previous studies have identified that Geobacter sulfurreducens has three different electron tr

171 tive bacteria Shewanella oneidensis MR-1 and Geobacter sulfurreducens have developed electron transfe

172 The goethites were reduced by Geobacter sulfurreducens in the presence of an external

173 The central metabolic model for Geobacter sulfurreducens included a single pathway for t

174 The rGO@PPy electrode was utilized in Geobacter sulfurreducens inoculated BESs, and the maximu

175 Geobacter sulfurreducens is a commonly enriched electric

176 Geobacter sulfurreducens is a species from the bacterial

177 dissimilatory Fe(III)-reducing microorganism Geobacter sulfurreducens is predicted to code for a smal

178 ng it with an electron transport specialist, Geobacter sulfurreducens KN400 (KN400), an adapted strai

179 Geobacter sulfurreducens makes direct electrical contact

180 a coculture of Geobacter metallireducens and Geobacter sulfurreducens metabolizing ethanol favored th

181 hird extracellular filament, formed from the Geobacter sulfurreducens octaheme cytochrome, OmcZ.

182 fate of As(V) during microbial reduction by Geobacter sulfurreducens of Fe(III) in synthetic arsenic

183 o-cultures of Geobacter metallireducens with Geobacter sulfurreducens or Methanosarcina barkeri in wh

184 Hg methylation by an iron-reducing bacterium Geobacter sulfurreducens PCA and a sulfate-reducing bact

185 ongrowing cultures of the anaerobic bacteria Geobacter sulfurreducens PCA and Desulfovibrio desulfuri

186 nsively studied Hg(II) methylating bacteria: Geobacter sulfurreducens PCA and Desulfovibrio desulfuri

187 ion by Desulfovibrio desulfuricans ND132 and Geobacter sulfurreducens PCA.

188 factors of Solibacter usitatus Ellin6076 and Geobacter sulfurreducens PCA.

189 teria Pseudodesulfovibrio mercurii ND132 and Geobacter sulfurreducens PCA.

190 Here, we show that Geobacter sulfurreducens periplasmic cytochromes PpcABCD

191 Geobacter sulfurreducens pili are actual wires.

192 The metallic-like electrical conductivity of Geobacter sulfurreducens pili has been documented with m

193 with the electrogenic and acetate-consuming Geobacter sulfurreducens produced electricity from PET o

194 We show that the iron reducing bacterium Geobacter sulfurreducens produces and exports appreciabl

195 discovered that the environmental bacterium Geobacter sulfurreducens produces cAG and uses a subset

196 um) transport of electrons along networks of Geobacter sulfurreducens protein filaments, known as mic

197 Geobacter sulfurreducens required expression of electric

198 electrodes by the Fe(III)-reducing anaerobe Geobacter sulfurreducens requires proper expression of r

199 The bacterium Geobacter sulfurreducens requires the expression of cond

200 Geobacter sulfurreducens RpoS sigma factor was shown to

201 Detailed analysis of the enzyme from Geobacter sulfurreducens showed it is a dinucleotide cyc

202 Incubation with Geobacter sulfurreducens showed that both the rate and t

203 he most studied strain of Geobacter species, Geobacter sulfurreducens strain DL-1, is truncated by a

204 ria, Anaeromyxobacter dehalogenans strain K, Geobacter sulfurreducens strain PCA, and Shewanella putr

205 cing the sludge with humic acids), and (iii) Geobacter sulfurreducens to produce electrons from aceta

206 only up to 1 to 2 nanometers via tunneling, Geobacter sulfurreducens transports respiratory electron

207 In particular, Geobacter sulfurreducens type IVa pili have proven to be

208 , is vital during the growth and survival of Geobacter sulfurreducens under conditions typically enco

209 Here we show that living biofilms of Geobacter sulfurreducens use nanowires of cytochrome Omc

210 e structure of a cytochrome c(7) (PpcA) from Geobacter sulfurreducens was determined by X-ray diffrac

211 dium(II) reduction to Pd(0) nanoparticles by Geobacter sulfurreducens was explored under conditions o

212 The mechanism of fumarate reduction in Geobacter sulfurreducens was investigated.

213 cupancy or functionality, and that NifH from Geobacter sulfurreducens was more resistant to O(2) expo

214 The model Fe(III)-reducing bacterium Geobacter sulfurreducens was used to reduce Fe(III) in t

215 tive appendages from the anaerobic bacterium Geobacter sulfurreducens were first observed two decades

216 of electron transport in actively respiring Geobacter sulfurreducens wild type biofilms using interd

217 y visualize charge propagation along pili of Geobacter sulfurreducens with nanometre resolution and u

218 Microbial (Shewanella oneidensis and Geobacter sulfurreducens) and chemical (dithionite) redu

219 naerobic Fe(III)-reducing bacterial species (Geobacter sulfurreducens) and the enzymatic reduction of

220 The extent of microbial (Geobacter sulfurreducens) reduction of Fe(III) phyllosil

221 The complete genome sequence of Geobacter sulfurreducens, a delta-proteobacterium, revea

222 Geobacter sulfurreducens, a representative of the family

223 al structures of the 1,004-residue PutA from Geobacter sulfurreducens, along with determination of th

224 Geobacter sulfurreducens, an Fe(III)-reducing deltaprote

225 ysR family regulators of a model prokaryote, Geobacter sulfurreducens, and employed phylogenetic tree

226 ytochrome shares 80% identity with PpcA from Geobacter sulfurreducens, but their redox properties are

227 tris TIE-1 and the Fe(III)-reducing bacteria Geobacter sulfurreducens, comparing magnetite nanopartic

228 ype cytochrome abundant in Fe(III)-respiring Geobacter sulfurreducens, designated MacA, was more high

229 s an electron donor in chemostat cultures of Geobacter sulfurreducens, despite the fact that growth y

230 irectional integration by type I-G CRISPR in Geobacter sulfurreducens, in which Cas4 is naturally fus

231 standing of the interaction mechanisms among Geobacter sulfurreducens, Mo(VI), and iron oxyhydroxides

232 aining, multi-ligand gated K(+) channel from Geobacter sulfurreducens, named GsuK.

233 tive appendages from the anaerobic bacterium Geobacter sulfurreducens, recently identified as extrace

234 tional states of the sigma factor network in Geobacter sulfurreducens, revealing a unique network top

235 NA-Seq, we show that GacA, the Hypr GGDEF in Geobacter sulfurreducens, specifically regulates cyclic

236 otein nanowires harvested from the bacterium Geobacter sulfurreducens, that functions at the biologic

237 re typically iron-reducing bacteria, such as Geobacter sulfurreducens, that produce high power densit

238 ctural homology with their counterparts from Geobacter sulfurreducens, the results showed that the he

239 In some species of bacteria such as Geobacter sulfurreducens, the transport of electrons is

240 on the sorption and methylation of Hg(II) by Geobacter sulfurreducens.

241 association of Geobacter metallireducens and Geobacter sulfurreducens.

242 rolling nitrogen-fixation gene expression in Geobacter sulfurreducens.

243 e use of metal ions as electron acceptors in Geobacter sulfurreducens.

244 oteobacteria, such as Myxococcus xanthus and Geobacter sulfurreducens.

245 , OmcB, was involved in Fe(III) reduction in Geobacter sulfurreducens.

246 es to Fe(III) and Mn(IV) oxides reduction in Geobacter sulfurreducens.

247 eduction in the presence of Fe(III)-reducing Geobacter sulfurreducens.

248 and cell physiology govern MeHg formation by Geobacter sulfurreducens.

249 with either adsorbed or coprecipitated OM by Geobacter sulfurreducens.

250 sfer from a heterotrophic partner bacterium, Geobacter sulfurreducens.

251 urrent generated during acetate oxidation by Geobacter sulfurreducens.

252 desulfuricans, Desulfovibrio magneticus and Geobacter sulfurreducens.

253 ly reduced by electroactive bacteria such as Geobacter Sulfurreducens.

254 by the anaerobic Fe(III)-reducing bacterium Geobacter sulfurreducens.

255 heme c-type cytochrome OmcS with the pili of Geobacter sulfurreducens.

256 ar and dominated by bacteria most similar to Geobacter sulfurreducens.

257 ortant source of elemental and methylmercury.Geobacter sulfurreducensPCA, a model bacterium predomina

258 omics improves the ability to understand how Geobacter thrives in natural environments and better the

259 tyostelium discoideum for methylation of the Geobacter tRNA-Asp and tRNA-Glu were determined showing

260 had only a weak activity toward its matching Geobacter tRNA-Asp, but methylated Geobacter tRNA-Glu wi

261 matching Geobacter tRNA-Asp, but methylated Geobacter tRNA-Glu with good activity.

262 poS plays a role in regulating metabolism of Geobacter under suboptimal conditions in subsurface envi

263 in DNA recognition by the NikR protein from Geobacter uraniireducens (GuNikR).

264 sphate uptake regulator in the chromosome of Geobacter uraniireducens Rf4.

265 ilaments on metal-reducing organisms such as Geobacter were composed of type IV pili, it has now been

266 sult, we show that tRNA-Glu is methylated in Geobacter while the methylation is absent in tRNA-Asp.

267 evealed that acetate/lactate mainly enriched Geobacter, while in situ OM supported growth and activit