ライフサイエンスコーパス: Gossypium

1 oid (containing "A" and "D" genomes) cotton (Gossypium).

2 ch as the A- and D-genomes of allotetraploid Gossypium.

3 y be common in the allotetraploid nucleus of Gossypium.

4 ere specific to either the A or D genomes of Gossypium.

5 ancestrally retained prior to the origin of Gossypium.

6 t comprehensive identification of lncRNAs in Gossypium.

7 nase (RLK) gene family in Oryza, Glycine and Gossypium.

8 the directionality of genome size change in Gossypium.

9 of complex folded embryos characteristic of Gossypium and its close relatives in the cotton tribe.

10 terized set of 16 diploid species of cotton (Gossypium) and 4 species representing allopolyploid deri

11 e divergence in diploid members of the genus Gossypium, and this pattern is conserved in allotetraplo

12 mes) as well as its two diploid progenitors, Gossypium arboreum (A genome) and Gossypium raimondii (D

13 ome and substantially improving the existing Gossypium arboreum (A(2)) and Gossypium hirsutum ((AD)(1

14 m, as well as the model diploid progenitors, Gossypium arboreum (A) and Gossypium raimondii (D).

15 Dt genome with the already sequenced diploid Gossypium arboreum (AA) and Gossypium raimondii (DD) gen

16 Here we sequenced and assembled the Gossypium arboreum (AA; 2n = 26) genome, a putative cont

17 (+)-Delta-cadinene synthase (DCS) from Gossypium arboreum (tree cotton) is a sesquiterpene cycl

18 inant (+)-delta-cadinene synthase (DCS) from Gossypium arboreum catalyzes the metal-dependent cycliza

19 erichia coli from CDN1-C1 cDNA isolated from Gossypium arboreum cyclizes (1RS)-[1-2H](E, E)-FDP to >9

20 ogy modeling using the template structure of Gossypium arboreum delta-cadinene synthase.

21 ers compared with growing the Asiatic cotton Gossypium arboreum L.

22 iber cDNAs of a cultivated diploid species ( Gossypium arboreum L.).

23 Asiatic cotton (Gossypium arboreum) cultivated as 'desi cotton' in India

24 TCP gene family in a diploid cotton species, Gossypium arboreum, including phylogenetic analysis, chr

25 g transcriptomic data from the cotton genus (Gossypium) as an example, we present an analytical workf

26 DD) Gossypium hirsutum ("Upland" cotton) and Gossypium barbadense ("Sea Island," "Pima," or "Egyptian

27 Gossypium barbadense is renowned for its superior fiber

28 that is preferentially expressed in cotton (Gossypium barbadense L. cv Sea Island) fiber was isolate

29 In Pima cotton (Gossypium barbadense L.), a crop that is bred for irriga

30 In one recently formed polyploid, cotton (Gossypium barbadense L.; AD genome), 83 non-cross-hybrid

31 families in the genome of tetraploid cotton (Gossypium barbadense L; [39]) revealed a small subset of

32 cultivated species of allopolyploid cotton, Gossypium barbadense produces extra-long fibers for the

33 rence genes lost from Gossypium hirsutum and Gossypium barbadense reference genomes respectively, of

34 sts of adaxial guard cells from Pima cotton (Gossypium barbadense) and coleoptile tips from corn (Zea

35 ploid cotton species (Gossypium hirsutum and Gossypium barbadense) have long been cultivated worldwid

36 Pima cotton (Gossypium barbadense) is widely cultivated because of it

37 .), squash (Cucurbita moschata), and cotton (Gossypium barbadense) macrofossils were excavated from a

38 P), to sesquiterpene phytoalexins in cotton (Gossypium barbadense) plants is catalyzed by delta-cadin

39 nes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only

40 oschata), peanuts (Arachis sp.), and cotton (Gossypium barbadense).

41 ommercial importance, Gossypium hirsutum and Gossypium barbadense, were domesticated after polyploidi

42 nd to better survive harsh environments than Gossypium barbadense, which produces superior-quality fi

43 patterns of genetic divergence among diploid Gossypium (cotton) genomes, 780 cDNA, genomic DNA and si

44 In Gossypium (cotton), the 3-fold genome size variation amo

45 Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotid

46 The inferred Gossypium gene order corresponded more closely than the

47 provide information for using the secondary Gossypium gene pool to breed for improved salt tolerance

48 hat represent a nonredundant set of putative Gossypium genes containing partial or full-length coding

49 ions and subgenomic distributions of cotton (Gossypium) genes/QTLs that confer resistance to the bact

50 ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred a

51 c maps for diploid (D) and tetraploid (AtDt) Gossypium genomes composed of sequence-tagged sites (STS

52 Here, we constructed a pan-genome of the Gossypium genus using ten representative diploid genomes

53 one, and only one, D-genome diploid cotton, Gossypium gossypioides, contains moderate levels of (oth

54 Like maize, Gossypium has undergone a threefold increase in genome s

55 Upon assembling the first Gossypium herbaceum (A(1)) genome and substantially impr

56 uence repeat (SSR) loci were re-sequenced in Gossypium herbaceum (A1 genome), G. arboreum (A2), G. ra

57 elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longic

58 temperature (IRT)-based methods for cotton (Gossypium hirsutism L.) water stress detection using in-

59 An expression library of dark-grown cotton (Gossypium hirsutm L.) cotyledons was screened with antib

60 s between cultivars of allotetraploid (AADD) Gossypium hirsutum ("Upland" cotton) and Gossypium barba

61 g the existing Gossypium arboreum (A(2)) and Gossypium hirsutum ((AD)(1)) genomes, we showed that all

62 cotton seed proteomes from the allopolyploid Gossypium hirsutum (AD genome) and its model A-genome an

63 al structure of recombinant annexin Gh1 from Gossypium hirsutum (cotton fibre) has been determined an

64 iva (arugula), Triticum aestivum (wheat) and Gossypium hirsutum (cotton) leaves and arugula protoplas

65 rough examining the tips of young elongating Gossypium hirsutum (Gh) and G. barbadense (Gb) fibers.

66 ss-1 (Li1) is a monogenic dominant mutant of Gossypium hirsutum (upland cotton) with a phenotype of i

67 enomic coding sequences from upland cotton ( Gossypium hirsutum ) BRI1 ( GhBRI1 ) were obtained and c

68 susceptible (Coker 312) and tolerant (Mac7) Gossypium hirsutum accessions identified several unique

69 characterize genome-wide diversity among 440 Gossypium hirsutum and 219 G. barbadense cultivars and l

70 motor kinesins, Kinesin-13A, from the cotton Gossypium hirsutum and Arabidopsis thaliana.

71 Gossypium hirsutum and G. barbadense, are the two cultiv

72 o independently domesticated cotton species, Gossypium hirsutum and G. barbadense.

73 o allotetraploid (AD-genome) cotton species, Gossypium hirsutum and G. mustelinum, relative to their

74 2,569 and 8851 non-reference genes lost from Gossypium hirsutum and Gossypium barbadense reference ge

75 Allotetraploid cotton species (Gossypium hirsutum and Gossypium barbadense) have long b

76 rm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic co

77 loid species of great commercial importance, Gossypium hirsutum and Gossypium barbadense, were domest

78 f fiber development in allotetraploid cotton Gossypium hirsutum by sequencing 376 genomes and 2,215 t

79 Gossypium hirsutum contributes the most production of co

80 hesis, a family of transgenic cotton plants (Gossypium hirsutum cv. Coker 312 elite) was produced tha

81 nslocation breakpoints, and telosome arms in Gossypium hirsutum cytogenetic stocks by fluorescence in

82 virus-induced gene silencing, we identified Gossypium hirsutum GhWRKY59 as an important transcriptio

83 Gossypium hirsutum has proven difficult to sequence owin

84 Gossypium hirsutum is a predominant source of natural pl

85 Gossypium hirsutum is an allotetraploid cotton species p

86 While the widely cultivated cotton species Gossypium hirsutum is generally susceptible, the diploid

87 ses of 32 789 high-quality ESTs derived from Gossypium hirsutum L.

88 Here we sequenced the allotetraploid Gossypium hirsutum L. acc.

89 ginseng C.A. Meyer), fiber length in cotton (Gossypium hirsutum L. and G. barbadense L.) and grain yi

90 Cotton (Gossypium hirsutum L. cv Acala SJ-1) fibers were also an

91 After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber

92 re isolated from cotton cultivars Coker 312 (Gossypium hirsutum L.) and Sea Island (G. barbadense L.)

93 asing the leaf temperature of intact cotton (Gossypium hirsutum L.) and wheat (Triticum aestivum L.)

94 ured in vivo during the expansion of cotton (Gossypium hirsutum L.) cotyledons.

95 Cotton (Gossypium hirsutum L.) fibers are single-celled trichome

96 We have characterized cotton (Gossypium hirsutum L.) genes encoding type 1 metallothio

97 Two homologous cotton (Gossypium hirsutum L.) genes, GhCTL1 and GhCTL2, encode

98 iased distribution in the tetraploid cotton (Gossypium hirsutum L.) genome that was also linked to di

99 Cotton (Gossypium hirsutum L.) is a key allopolyploid crop with

100 m irrigation termination periods for cotton (Gossypium hirsutum L.) is crucial for efficient utilizat

101 chitinase and 1,3-beta-glucanase in cotton (Gossypium hirsutum L.) leaves.

102 cDNA clone (997 bp in length) from a cotton (Gossypium hirsutum L.) library which putatively encodes

103 American cotton (Gossypium hirsutum L.), transformed with Bacillus thurin

104 radiation hybrid" (WWRH) panel from cotton (Gossypium hirsutum L.).

105 to variation in the P x Zn supply of cotton (Gossypium hirsutum L.).

106 the elongating fiber cells of Upland cotton (Gossypium hirsutum L.).

107 CotMYBA, a myb gene which is expressed in Gossypium hirsutum ovules and has some homology to MIXTA

108 The role of Gossypium hirsutum WRINKLED1 (GhWRI1) in seed-oil accumu

109 Here, we investigated the role of a cotton (Gossypium hirsutum) actin gene in the organization of ac

110 f homoeologous loci in allopolyploid cotton (Gossypium hirsutum) and in species representing its dipl

111 s (CNTs) on fiber-producing species (cotton, Gossypium hirsutum) and ornamental species (vinca, Catha

112 ptomes between wild and domesticated cotton (Gossypium hirsutum) and their reciprocal F(1) hybrids, r

113 The fibers of cotton (Gossypium hirsutum) are single-cell trichomes that under

114 that specific AGPs were produced by cotton (Gossypium hirsutum) calli undergoing SE and that when th

115 ase in Nicotiana or subunit 1 of cottonseed (Gossypium hirsutum) catalase were introduced in the sens

116 We have characterized two cotton (Gossypium hirsutum) cDNA clones and identified one rice

117 Domestication of upland cotton (Gossypium hirsutum) converted it from a lanky photoperio

118 elucidating gene function in Upland cotton (Gossypium hirsutum) due to its complex allotetraploid ge

119 s from several plant sources (mature cotton (Gossypium hirsutum) embryos, roots of cotton seedlings,

120 encoding annexin was isolated from a cotton (Gossypium hirsutum) fiber cDNA library.

121 Cotton (Gossypium hirsutum) fibers are single-celled seed coat h

122 We used cotton (Gossypium hirsutum) fibers that underwent robust elongat

123 In cotton (Gossypium hirsutum) fibers, cortical microtubules underg

124 Developing cotton (Gossypium hirsutum) fibers, cultured in vitro with their

125 in, GhKCH1, has been identified from cotton (Gossypium hirsutum) fibers.

126 Upland cotton (Gossypium hirsutum) has long been an important economic

127 Cotton (Gossypium hirsutum) provides the world's dominant renewa

128 photosynthetic, cotyledon library of cotton (Gossypium hirsutum) seedlings with putative plastid-targ

129 NAEs in vitro and in vivo in imbibed cotton (Gossypium hirsutum) seeds.

130 ponses of field and greenhouse-grown cotton (Gossypium hirsutum) source leaves to water-deficit stres

131 A silencing vector for cotton (Gossypium hirsutum) was developed from the geminivirus C

132 pic variation in hydraulic traits of cotton (Gossypium hirsutum), an economically important species f

133 including wheat (Triticum aestivum), cotton (Gossypium hirsutum), and soybean (Glycine max), have con

134 t GhCIPK6 homologous genes in upland cotton (Gossypium hirsutum).

135 VL5) with its target gene GhCHR from cotton (Gossypium hirsutum).

136 s directly in seed tissues of upland cotton (Gossypium hirsutum).

137 mmon beans (Phaseolus vulgaris), and cotton (Gossypium hirsutum).

138 emic disease resistance in the dicot cotton (Gossypium hirsutum).

139 dely cultivated cotton is an allotetraploid (Gossypium hirsutum, AADD) that contains GhMYB2A and GhMY

140 , including two currently unexamined species Gossypium hirsutum, and Zostera marina, were characteriz

141 nomes (A(T) and D(T)) of the allotetraploid, Gossypium hirsutum, as well as the model diploid progeni

142 However, the role of D53 in cotton (Gossypium hirsutum, Gh) fiber development remains unclea

143 synthases of other prokaryotes, Arabidopsis, Gossypium hirsutum, Populus alba x Populus tremula, corn

144 and DT) of the allopolyploid cotton species, Gossypium hirsutum.

145 ted for 10 of 40 genes examined in ovules of Gossypium hirsutum.

146 with genomic DNA from allotetraploid cotton Gossypium hirsutum.

147 ries were derived from allopolyploid cotton (Gossypium hirsutum; A(T) and D(T) genomes) as well as it

148 s], tobacco [Nicotiana tabacum], and cotton [Gossypium hirsutum]) from warm regions.

149 which the six most informative interspecific Gossypium hirsutumxG. barbadense genetic maps were used

150 The cotton genus (Gossypium) is an excellent evolutionary model for polypl

151 from north-east Brazil, the D-genome diploid Gossypium klotzschianum from the Galapagos Islands, foll

152 in naturally occurring allopolyploid cotton (Gossypium L.), a synthetic allopolyploid of the same gen

153 me duplication (WGD) event(s) in the diploid Gossypium lineage and its (their) effects: a genome-leve

154 round of genome duplication occurred in the Gossypium lineage.

155 bred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the ou

156 and tetraploid members of the cotton genus (Gossypium, Malvaceae).

157 studies have suggested that diploid cotton (Gossypium) might be an ancient polyploid.

158 salt-tolerant species were the allopolyploid Gossypium mustelinum from north-east Brazil, the D-genom

159 in only one of the five tetraploid species (Gossypium mustelinum).

160 of divergent paralogues and recombinants in Gossypium, Nicotiana, Tripsacum, Winteraceae, and Zea ri

161 ogenitors, Gossypium arboreum (A genome) and Gossypium raimondii (D genome).

162 loid progenitors, Gossypium arboreum (A) and Gossypium raimondii (D).

163 equenced diploid Gossypium arboreum (AA) and Gossypium raimondii (DD) genomes revealed conserved gene

164 Annotated whole genome sequences of Gossypium raimondii are available with aligned genetic m

165 duplications were shared by G. arboreum and Gossypium raimondii before speciation.

166 13 major scaffolds of the recently released Gossypium raimondii genome indicating high level of homo

167 YB genes were identified in cotton D genome (Gossypium raimondii), that are much larger than that fou

168 oidy, we studied a model diploid progenitor (Gossypium raimondii, D-genome) of the allopolyploid (AD-

169 gene densities in corresponding regions from Gossypium raimondii, V. vinifera, Arabidopsis thaliana a

170 and contiguous genome of the cotton species Gossypium raimondii.

171 e datasets collected from the cotton species Gossypium raimondii.

172 is of the TCP transcription factor family in Gossypium raimondii.

173 r and the outgroup D genome of non-spinnable Gossypium raimondii.

174 ypsy-like retrotransposon sequences, Gorge3 (Gossypium retrotransposable gypsy-like element), appears

175 Larger quantities of cotton (Gossypium sp.) recovered from late 12th- to early 13th-c

176 The comprehensive study of Zf-BEDs in Gossypium sp., (cotton) also demonstrated a clear footpr

177 nd those from related A and D genome diploid Gossypium species ( G. arboreum and G. thurberi ) indica

178 mic sequences from several tetraploid (AtDt) Gossypium species and genotypes with putative diploid A-

179 Allotetraploid Gossypium species are inferred to contain at least 14 lo

180 ences have differentially accumulated in the Gossypium species with the smallest genome, G. raimondii

181 deep computational analysis of CRKs in five Gossypium species, including G. arboreum (60 genes), G.

182 derlying the diversity of salt resistance in Gossypium species, we compared global transcriptomic res

183 Adh gene copy number varies among Gossypium species, with diploids containing at least sev

184 Drought is a key limiting factor for cotton (Gossypium spp.) production, as more than half of the glo

185 The reference genome sequence for cotton (Gossypium spp.) revealed a ploidy change of a complexity

186 pite having moderate salt-tolerance, cotton (Gossypium spp.) suffers severe yield losses to salinity

187 ps of extant diploid and tetraploid cottons (Gossypium spp.) were used to infer the approximate order

188 ar mechanisms of fiber initiation in cotton (Gossypium spp.), an integrated approach combining transc

189 the world's natural fiber comes from cotton (Gossypium spp.), which is an important crop worldwide.

190 s a serious vascular wilt disease in cotton (Gossypium spp.).

191 tion of lncRNAs has been reported in cotton (Gossypium spp.).

192 ponsible for allelic differences between the Gossypium tetraploids and their diploid progenitors.

193 e representative diploid (n = 13) members of Gossypium that vary in genome size from 880 to 2460 Mb (

194 ion-yr-old) and synthetic tetraploid cotton (Gossypium) to determine whether homoeologous gene pairs

195 Because ESTs from diploid and allotetraploid Gossypium were combined in a single assembly, we were in

196 id (AD-genome) and diploid (A- and D-genome) Gossypium were evaluated for a total of 29 morphological

197 et several hundred homeologous gene pairs of Gossypium were printed on custom NimbleGen microarrays.