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1 IBV 3a protein is expressed in infected cells but is not
2 IBV infection induced antibodies specific to the HA head
3 IBV is an important human pathogen, but its ability to i
4 IBV vaccines are currently developed by serial passage o
5 IBV was derived by use of coronary resistance measuremen
6 IBV was detected in 3 nasal swabs from PRRSV-seropositiv
7 IBV-specific CTL epitopes were mapped within the carboxy
9 s did not activate H3, but they did activate IBV HA in vitro Our results indicate that TMPRSS4 is an
20 /2009 H1N1 and A/Wyoming/3/2003 H3N2) and an IBV (B/Brisbane/60/2008, Victoria lineage), demonstratin
22 itro Our results indicate that TMPRSS4 is an IBV-activating protease in murine AECIIs and suggest tha
24 ng protease of IAV in human airway cells and IBV in type II pneumocytes and as a potential target for
25 observations made with other coronavirus and IBV N proteins with both overexpressed proteins and infe
26 omparison of crystal packing of SARS-CoV and IBV N-NTDs suggests a common mode of RNA recognition, bu
29 SS13, hepsin, and prostasin activated H3 and IBV HA in vitro IBV activation and replication was reduc
31 A(H1N1)pdm09 and IBV (6 cases), A(H3N2) and IBV (8 cases), and nonsubtyped IAV and IBV (3 cases); an
32 ) and IBV (8 cases), and nonsubtyped IAV and IBV (3 cases); and 1 case of triple infection with A(H3N
33 nd H1N1pdm IAV in mice but that H3N2 IAV and IBV activation is independent of TMPRSS2 and carried out
38 TMPRSS2 in proteolytic activation of IAV and IBV in three human airway cell culture systems: primary
41 Here, to identify additional H3 IAV- and IBV-activating proteases, we used RNA-Seq to investigate
43 nza A(H3N2) virus (1 case), A(H1N1)pdm09 and IBV (6 cases), A(H3N2) and IBV (8 cases), and nonsubtype
45 segmented negative-sense RNA genome from any IBV strain in a single tube/well (IBV genomic amplificat
46 o develop mechanisms to rationally attenuate IBV for the next generation of effective vaccines.IMPORT
47 d a panel of pathogenic, mild and attenuated IBV strains in ex vivo tracheal organ culture (TOC).
51 P < 0.001) and patients with large baseline IBV showed substantial and clinically significant reduct
52 in IBV was directly related to the baseline IBV (r2 = 0.97; P < 0.001) and patients with large basel
54 ally, disruption of the secretory pathway by IBV E correlates with a form that is likely monomeric, s
56 in in vitro, indicating that host shutoff by IBV plays an important role in antagonizing the host's i
57 of amplifying the diverse and ever-changing IBV genome, we developed and optimized techniques that a
60 navirus and demonstrate that the coronavirus IBV employs a direct, low-pH-dependent virus-cell fusion
61 lippery sequence variants of the coronavirus IBV frameshift signal in strains of Escherichia coli una
62 between coronary resistance- and MCE-derived IBV could yield insight into structural mechanisms of IB
63 To determine if any cells can survive direct IBV infection, we here generate a recombinant IBV capabl
66 can also replicate in the kidneys, dividing IBV into the following two pathotypes: nonnephropathogen
67 wo pathotypes: nonnephropathogenic (example, IBV-M41) and nephropathogenic viruses (including IBV-QX)
69 apsulation of plasmid DNA vaccine expressing IBV nucleocapsid (N) protein by the QAC adjuvant system
73 ays of R18-labeled virions and show that for IBV, coronavirus-cell fusion occurs in a low-pH-dependen
74 stem 1 and to convert a short non-functional IBV-derived pseudoknot into a highly efficient, kinked f
75 study demonstrates that the gammacoronavirus IBV, similar to its mammalian counterparts, has evolved
77 dy closes a gap in the understanding of host-IBV interaction and paves the way for further characteri
82 binding of QX-RBD to a previously identified IBV-M41 receptor was confirmed by enzyme-linked immunoso
83 st cell response to IBV infection.IMPORTANCE IBV is a major avian pathogen and presents a substantial
84 oexpressed with IBV M, both from cDNA and in IBV infection, the two proteins are colocalized in Golgi
86 hocardiography (MCE) can quantify changes in IBV during coronary stenosis and (2) the relation betwee
93 er, the localization of selected proteins in IBV-infected cells as well as their activity during viru
95 of modulating stem 1 length and stability in IBV-based pseudoknots, and found that a stem 1 with at l
98 splayed broad and potent capacity to inhibit IBV NA enzymatic activity, neutralize the virus in vitro
100 e virus in vitro, and protect against lethal IBV infection in mice in prophylactic and therapeutic se
102 ently published cryo-EM structure of the M41 IBV spike protein and our glycosylation results revealed
103 emonstrate that, in a time-dependent manner, IBV effectively interferes with IFN signaling and that i
105 trols, patients with TBI had a higher median IBV (56 [range, 9-281] vs 1 [range, 0-11] mL; P < .001)
106 ntly produced RBDs from the nephropathogenic IBV strain QX and from the nonnephropathogenic strain M4
108 vidence that accessory proteins 3a and 3b of IBV modulate the response at the transcriptional and tra
109 we demonstrate that accessory protein 5b of IBV plays a crucial role in the onset of host shutoff.
110 lease of infectious virions, accumulation of IBV spike (S) protein on the plasma membrane compared to
116 Finally, we determined that the delivery of IBV S to the plasma membrane was reduced in cells infect
117 rnative LAIV platform for the development of IBV vaccines.IMPORTANCE A number of issues with regard t
119 lts indicated that the hydrophobic domain of IBV E alters the host secretory pathway to the apparent
121 EG3 suggested that the hydrophobic domain of IBV E may be important for the forward trafficking of ca
122 ine the within-host evolutionary dynamics of IBV by sequencing virus populations from naturally infec
123 is known about the evolutionary dynamics of IBV during individual infections and transmission events
124 er strains, suggesting that the evolution of IBV strains in general has been a complex, and as yet, p
126 idence suggesting that the monomeric form of IBV E correlates with an increased Golgi luminal pH.
127 with both pathogenic and attenuated forms of IBV and expand our understanding of gammacoronaviral gen
128 vidence for two distinct oligomeric forms of IBV E, one essential for assembly and the other with a r
133 lipid synthesis overlaps the localization of IBV M, we asked whether perturbation of sphingolipids af
139 thermore, we observed that overexpression of IBV E, but not EG3, induced the disassembly of the Golgi
140 f the IFN response during the early phase of IBV infection, the signaling of nonself dsRNA through bo
142 ormation of two distinct oligomeric pools of IBV E in transfected and infected cells and the residues
145 ealed that, in contrast to the S1 protein of IBV, S1 proteins of enteric gammacoronaviruses recognize
146 t with the lower global evolutionary rate of IBV.IMPORTANCE The evolution of influenza virus is a sig
147 tion of the receptor-binding domain (RBD) of IBV strain M41 spike protein and assessed the role of th
149 present work, we describe the resistance of IBV to IFN and the potential role of accessory proteins
150 rameshift efficiency in vitro of a series of IBV-based pseudoknots whose stem 1 length was varied fro
153 also inhibited the activation and spread of IBV in AECII but did not affect IBV activation in HBEC a
154 ating antibodies directed to the HA stalk of IBV contribute to cross-protective immunity to IBV of bo
155 om chickens infected with the Gray strain of IBV or inoculated with a DNA plasmid encoding nucleocaps
156 M41-CK, a virulent lab-adapted strain of IBV, was egg passaged over 100 times in four parallel in
158 ected with serologically distinct strains of IBV was dose responsive in a manner similar to that for
160 c antibodies revealed that the C terminus of IBV E is cytoplasmic and the N terminus is translocated.
163 otein, we developed a recombinant version of IBV in which the E protein was replaced by a mutant cont
164 inal sequences engineered into the optimized IBV-GA2 products also enable ligation-free cloning to ra
166 IBV were linearly related, MCE overestimated IBV derived from the vasodilatation model and underestim
167 f four replicates of a serially egg-passaged IBV revealed a different pattern of genomic variation in
169 teraction with host cell factors, protecting IBV S from premature cleavage and leading to the efficie
170 hat independently of its accessory proteins, IBV inhibits IFN-mediated phosphorylation and translocat
171 BV infection, we here generate a recombinant IBV capable of activating a host-cell reporter to perman
172 s 110 to 112 (KIP) were sufficient to render IBV-M41 with the ability to bind to kidney, while the re
179 conserved in TOCs, each of the other tested IBV strains produced DMVs, zippered ER and spherules.
183 mmunoprecipitation studies demonstrated that IBV 3a localized to the cytoplasm in a diffuse pattern a
185 protein secretion profiles demonstrated that IBV-inoculated FNEC expressed delayed type-I/II IFN resp
186 1 individuals with influenza B, we find that IBV accumulates lower genetic diversity than previously
188 sceptible to IBV infections, indicating that IBV is a swine pathogen, and swine may serve as a natura
199 e-validated transmission pairs suggests that IBV experiences a tight transmission bottleneck similar
203 hough E. coli ribosomes changed frame at the IBV signal (UUUAAAG) with an efficiency similar to that
204 ase is not required for frameshifting at the IBV signal and some other explanation is required to acc
206 ) and improved flow metabolism coupling, the IBV was small and clinically insignificant in the majori
207 RiboSeq) to delineate gene expression in the IBV M41-CK and Beau-R strains at subcodon resolution.
208 e core, is oriented similarly to that in the IBV N-NTD, and is involved in crystal packing in the mon
209 explored whether analogous mutations in the IBV polymerase subunits would result in a stable virus w
210 howed that overall sequence diversity in the IBV population increased but the four replicates only ha
212 reported that the hydrophobic domain of the IBV E protein, a putative viroporin, causes disruption o
215 terminal truncations, we determined that the IBV E Golgi targeting information is present between tai
217 reases the kinetic barriers to unfolding the IBV pseudoknot, but has only a minor effect on the hairp
218 ressed using recombinant vaccinia virus, the IBV E protein is released from cells at low levels in se
223 To determine the susceptibility of pigs to IBV infection, we conducted a serological survey for U.S
225 ving insights into the host cell response to IBV infection.IMPORTANCE IBV is a major avian pathogen a
226 lls indicated that the host cell response to IBV occurs primarily at the level of transcription, with
227 ata demonstrate that pigs are susceptible to IBV infection; therefore, they warrant further surveilla
228 lts demonstrate that pigs are susceptible to IBV infections, indicating that IBV is a swine pathogen,
234 fluenza A virus (IAV) and influenza B virus (IBV) cause substantial morbidity and mortality during an
244 s (IAV), group 2 IAV, and influenza B virus (IBV) were designed and produced in bacterial recombinant
247 ammacoronavirus infectious bronchitis virus (IBV) causes an acute, highly contagious respiratory dise
248 ruses including infectious bronchitis virus (IBV) contain a putative open reading frame (ORF), locali
249 p 3 coronavirus infectious bronchitis virus (IBV) contains a canonical dilysine endoplasmic reticulum
250 the coronavirus infectious bronchitis virus (IBV) contains a classic hairpin-type RNA pseudoknot that
251 ian coronavirus infectious bronchitis virus (IBV) contains two cis-acting signals essential for effic
252 ammacoronavirus infectious bronchitis virus (IBV) does induce host shutoff, and we find that its acce
253 function of the infectious bronchitis virus (IBV) E protein, we developed a recombinant version of IB
254 from the avian infectious bronchitis virus (IBV) has dramatic effects on the secretory system which
255 tein from avian infectious bronchitis virus (IBV) has dramatic effects on the secretory system, which
256 ammacoronavirus infectious bronchitis virus (IBV) has evolved under evolutionary pressure to evade an
258 (IB) caused by infectious bronchitis virus (IBV) is currently a major threat to chicken health, with
259 the coronavirus infectious bronchitis virus (IBV) is localized to the Golgi complex when expressed ex
260 y, we show that infectious bronchitis virus (IBV) is resistant to IFN treatment and identify a role f
261 doknot found in infectious bronchitis virus (IBV) is typical of those that possess a long stem 1 of 1
263 eractome of the infectious bronchitis virus (IBV) N protein was mapped using stable isotope labeling
265 aviruses, avian infectious bronchitis virus (IBV) possesses a long, single-stranded, positive-sense R
268 L) responses to infectious bronchitis virus (IBV) were determined at regular intervals between 3 and
269 nucleocapsid of infectious bronchitis virus (IBV) were identified by using target cells infected with
273 uses, including infectious bronchitis virus (IBV), are important respiratory pathogens of poultry.
274 an coronavirus, infectious bronchitis virus (IBV), contains information for localization to the cis-G
275 mmacoronavirus, infectious bronchitis virus (IBV), induces a delayed activation of the IFN response i
276 ammacoronavirus infectious bronchitis virus (IBV), induces regions of ER that are zippered together a
277 cluding chicken infectious bronchitis virus (IBV), require specific alpha2,3-linked sialylated glycan
278 pseudoknot from infectious bronchitis virus (IBV), three constituent hairpins, and three mutants of t
285 nza A viruses (IAV) and influenza B viruses (IBV) cause significant morbidity and mortality during se
286 d prostasin activated H3 and IBV HA in vitro IBV activation and replication was reduced in AECIIs fro
287 Changes in intramyocardial blood volume (IBV) mediate autoregulatory adaptations to coronary sten
289 nificant fall in the ischaemic brain volume (IBV) (from 15 +/- 16 to 5 +/- 4 ml; P < 0.01) and improv
292 afficking of cargo, so we determined whether IBV E facilitated the delivery of cargo to the plasma me
293 tion of Golgi pH, promoting a model in which IBV E alters the secretory pathway through interaction w
297 sociation of selected cellular proteins with IBV N protein was confirmed by immunoblotting, cosedimen
300 e plasma membrane compared to wild-type (WT) IBV-infected cells, and aberrant cleavage of IBV S on vi