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1 LCL and CAPE play a more important role than TCWV in det
2 LCL HiC data mapped intergenic EBNA2 sites to EBNA2 up-r
3 LCL hits were enriched for EBV-induced genes, including
4 LCL proliferation induces p16(INK4A) and p14(ARF)-mediat
5 LCL-derived iPSCs exhibited normal karyotype, expressed
6 LCLs from women with past PMD (n = 8) or control women (
10 ative refractive error was -0.30+0.47x6 (95% LCL, -2.36+1.31x36; 95% UCL, +1.00+1.18x148) with a diff
11 th (multivariable-adjusted hazard ratio, (95%LCL) aHR(95%UCL) ), over follow-up through December 2018
12 ochondrial protective pathways and that AD-A LCLs are better able to activate these protective pathwa
13 better understand mitoplasticity in the AD-A LCLs we examined changes in mitochondrial function using
16 nvironmental exposures; another subset of AD LCLs demonstrated normal mitochondrial activity (AD-N).
24 ential for ESE activity, MYC expression, and LCL growth.IMPORTANCE SEs play critical roles in cancer
25 romosomes from human primary lymphocytes and LCL, showing that higher level distribution is not alter
26 rences in immunopathogenesis between MCL and LCL may result from an imbalance between prostaglandins
32 at, in contrast to the soil enzyme, the ATII-LCL mercuric reductase is functional in high salt, stabl
38 ontrast, the restriction factor present in B-LCLs blocks HIV-1 replication at a later step, after nuc
40 otencies and effects were comparable between LCLs of two genetically unrelated individuals, providing
41 exhibited RNA half-life differences between LCLs at a false discovery rate (FDR) < 0.05, which accou
43 ifferences in gene expression levels between LCLs and B cells are of small magnitude, and that LCLs c
44 -ITD(+) AML drug resistance is attenuated by LCL-461, a mitochondria-targeted ceramide analog drug, i
45 These motif associations were confirmed by LCL RBPJ ChIP-seq finding 72% RBPJ occupancy and Encyclo
48 mble the proliferating lymphoblastoid cells (LCLs) (latency III) that are generated after infection.
53 epletion of CBFbeta in an EBNA3C-conditional LCL confirmed the role of CBF in the regulation of EBNA3
54 to the IgH V-D-J region from the conditional LCL was used to formally show that SHM is activated by f
56 the Seahorse XF96 analyzer in AD and Control LCLs after exposure to trichloroacetaldehyde hydrate (TC
57 ed the detrimental effect of TCAH in Control LCLs and resulted in a increase in mitochondrial respira
58 ally binds to hypo-methylated DNA in control LCLs, whereas the differential DNA methylation alters co
59 significantly higher in mutant than control LCLs, consistent with an abnormality of nuclear calcium
60 is study, lymphoblastoid cell line cultures (LCLs) from women with PMDD and asymptomatic controls wer
62 not been fully characterized to what degree LCLs preserve the in vivo status of non-genetic biologic
63 ere indistinguishable from wild-type-derived LCLs in terms of steady-state EBV gene transcription.
65 e lymphoblastoid cell lines (LCLs), dividing LCLs established from the individuals homozygous for the
67 pression analysis and cDNA sequencing in EBV LCLs of individuals support the presence of a stable tru
68 irus-infected lymphoblastoid cell lines (EBV-LCL) were isolated based on their intercellular adhesive
69 J occupancy and Encyclopedia Of DNA Elements LCL ChIP-seq finding EBF, NFkappaB RELA, and PU.1 at 54%
79 1-induced cFLIP was found to be critical for LCL defense against TNFalpha-mediated programmed cell de
81 percent of LCL genes that are essential for LCL growth and survival were differentially expressed.
84 monstrate that while Cp is not essential for LCL outgrowth in vitro, it enhances transformation effic
86 tative trait loci (eQTL), mQTL detected from LCLs were enriched in associations for a broader range o
88 rain neurons or patient-derived LRRK2 G2019S LCLs with the LRRK2 kinase inhibitor GNE-7915, either pr
90 We conclude that genetically diverse human LCLs enable identification of susceptibility genes (e.g.
91 l effects, preventing virus release in human LCLs and abrogating gp350 expression in 12-O-tetradecano
93 nes (PDEGs), which are up-regulated genes in LCL for a given class of drug response phenotype in trip
97 known transcription factor binding sites in LCL GM12878 revealed substantial co-localization of EBNA
99 ost of the original 49 samples but absent in LCLs, while multi-cell-type DARNS were enriched at LCL-s
104 ence of EBNA3C, and (v) H2AX knocked down in LCLs led to enhanced expression of Bub1 and downregulati
106 re annotated, 78% as mQTL and 31% as eQTL in LCLs, which covered 37% of the investigated diseases/tra
109 Twelve proteins had detectable expression in LCLs and three, CCT8, MX1 and PWP2, showed elevated leve
116 CT8, MX1 and PWP2, showed elevated levels in LCLs derived from patients with DS compared with control
118 previously reported that DNA methylation in LCLs is highly variable in a data set of ~27,000 CpG din
120 uced gene expression differences observed in LCLs may be influenced by their transformation, and thus
121 association (GWA) analyses were performed in LCLs using 1.3 million SNPs, 485k DNA methylation probes
123 we generated a comprehensive EBV regulome in LCLs.IMPORTANCE Epstein-Barr virus (EBV) immortalization
128 e promoter (AP) and strong enhancer (SE)] in LCLs more than expected by chance [45.3-fold enrichment
131 uantitative PCR (ChIP-qPCR) indicate that in LCLs inhibition of CDKN2C (p18INK4c) and PRDM1 (BLIMP-1)
132 cture that underlies regulatory variation in LCLs can typically be generalized to primary B cells.
133 icting valid sequence differences, including LCLs with putative mosaicism for the non-reference allel
140 ions prevails in the lower convective layer (LCL) of the brine pool at Atlantis II (ATII) Deep in the
141 report the generation of iPSCs from 2 LCLs (LCL-iPSCs) via a feeder-free episomal method using a coc
142 g platform and performed the L. camara leaf (LCL) and root (LCR) de novo transcriptome analyses.
146 can cause localized cutaneous leishmaniasis (LCL), which heals spontaneously, or mucosal leishmaniasi
148 ) and decreasing lifting condensation level (LCL) with elevation overwhelming the effects of decreasi
149 as -0.12+0.12x2 (95% lower confidence limit [LCL], -1.94+1.06x44; 95% upper confidence limit [UCL], +
155 lyses of published lymphoblastoid cell line (LCL) Hi-C data and our 4C-seq experiments position EBV e
160 S patient-derived lymphoblastoid cell lines (LCL) demonstrated increased mtDNA damage relative to age
161 a panel of human lymphoblastoid cell lines (LCL) to infer drug response networks (DRNs) that are res
162 V-infected cells, lymphoblastoid cell lines (LCL) were treated with AM580, a synthetic retinoic acid
163 ) of 5 ATM mutant lymphoblastoid cell lines (LCL), an ATM mutant MCL cell line, an ATM knockdown PGA
166 on changes in 480 lymphoblastoid cell lines (LCLs) after in vitro simvastatin treatment, and identifi
167 even human HapMap lymphoblastoid cell lines (LCLs) and analyzed the effect of DNA sequence variation
168 s) in transformed lymphoblastoid cell lines (LCLs) and human embryonic stem cell (ES) lines, but were
169 ruba (YRI) HapMap lymphoblastoid cell lines (LCLs) and identified 12 cis and 160 trans protein level
170 EBV-transformed lymphoblastoid B-cell lines (LCLs) and primary PTLDs overexpress galectin-1 (Gal1), a
172 EBV-immortalized lymphoblastoid cell lines (LCLs) as a model, we found that the expression of major
173 pattern in human lymphoblastoid cell lines (LCLs) as well as identified specific differential DNA me
174 us immortalized lymphoblastoid B-cell lines (LCLs) can be generated from a minimal amount of blood an
175 ell lines such as lymphoblastoid cell lines (LCLs) could represent the ideal cellular model system.
176 ene expression in lymphoblastoid cell lines (LCLs) derived from 210 HapMap individuals, we identify c
177 ,540 CpG sites in lymphoblastoid cell lines (LCLs) derived from independent samples of European and A
178 model of PMD with lymphoblastoid cell lines (LCLs) derived from participants of a prior E2-WD clinica
179 EBV-transformed lymphoblastoid B cell lines (LCLs) derived from subjects with TERT promoter mutations
180 t that RP-mutated lymphoblastoid cell lines (LCLs) established from DBA patients show defective rRNA
184 histone marks in lymphoblastoid cell lines (LCLs) from 75 sequenced individuals with LCL-specific Hi
185 that a subset of lymphoblastoid cell lines (LCLs) from children with autistic disorder (AD) show mit
186 modifications in lymphoblastoid cell lines (LCLs) from human, chimpanzee and rhesus, and we identify
187 enomic regions in lymphoblastoid cell lines (LCLs) from humans, chimpanzees, and rhesus macaques, usi
188 ies involving 523 lymphoblastoid cell lines (LCLs) from individuals of European, African, Asian, and
189 use of banked human lymphoblast cell lines (LCLs) from normal and depressed subjects; the latter div
190 ein expression in lymphoblastoid cell lines (LCLs) from patients with DS and in brains from two mouse
192 ith HHV-6B, (iii) lymphoblastoid cell lines (LCLs) from subjects with inherited chromosomally integra
193 equence data from lymphoblastoid cell lines (LCLs) from the TwinsUK cohort, we identify a candidate s
194 h time in culture, lymphoblastic cell lines (LCLs) from two affected individuals in family UW-AP exhi
195 s into long-lived lymphoblastoid cell lines (LCLs) in vitro requires the collaborative effects of EBN
196 sly proliferating lymphoblastoid cell lines (LCLs) in vitro through manipulation of a number of major
197 ckdown of H2AX in lymphoblastoid cell lines (LCLs) led to the upregulation of the Bub1 oncoprotein an
198 BV) transformed lymphoblastoid B-cell lines (LCLs) not only express DEC-205 at similar levels to DCs,
199 latently infected lymphoblastoid cell lines (LCLs) partially via Toll-like receptor 2 triggering, as
200 (EBV) transformed lymphoblastoid cell lines (LCLs) provide a conveniently accessible and renewable re
201 B-lymphocytes to Lymphoblastoid Cell Lines (LCLs) requires four EBV nuclear antigen (EBNA) oncoprote
202 establishment of lymphoblastoid cell lines (LCLs) that can grow indefinitely in vitro EBV transforms
203 sly proliferating lymphoblastoid cell lines (LCLs) that carry EBV DNA as extra-chromosomal episomes,
204 e ZIIRmt-infected lymphoblastoid cell lines (LCLs) that did grow out exhibited a phenotype similar to
207 (VDR) binding in lymphoblastoid cell lines (LCLs), chromatin states in LCLs and MS-associated genomi
208 rast to wild-type lymphoblastoid cell lines (LCLs), dividing LCLs established from the individuals ho
209 -seq performed on lymphoblastoid cell lines (LCLs), expressing epitope-tagged EBNA3A, EBNA3B or EBNA3
211 lytic-permissive lymphoblastoid cell lines (LCLs), pulse exposure to the chemical ER-stress inducer
212 In GS-derived lymphoblastoid cell lines (LCLs), the proportion of ITPR1-positive cells using immu
213 (EBV)-transformed lymphoblastoid cell lines (LCLs), we identified four EBV oncoproteins and five EBV-
214 sly proliferating lymphoblastoid cell lines (LCLs), which represent an experimental model for EBV-ass
230 ll-studied Yoruba lymphoblastoid cell lines (LCLs); 14 of these lines were further differentiated int
231 ortalization into lymphoblastoid cell lines (LCLs); this latency program is controlled by the EBNA2 v
232 f treatment with long-circulating liposomes (LCL) containing prednisolone phosphate (PLP-LCL) in a mo
236 rting with the 3D genome organization map of LCL, we constructed a comprehensive EBV regulome encompa
241 ns resulted in an increased proliferation of LCLs and demonstrated positive selection over time.
242 ed mitochondrial bioenergetics in 10 sets of LCLs from children with ASD, Sibs, and unrelated/unaffec
243 new insights into the epigenetic systems of LCLs and suggests that more specifically designed experi
245 ken together, the results support the use of LCLs for the study of statin effects on cholesterol meta
248 The major surface carbohydrates detected on LCL and MCL promastigotes were alpha-Man, alpha-Glc, and
258 C/E(Z) genes was decreased in untreated PMDD LCLs with MTF2, PHF19 and SIRT1 all significantly decrea
259 To assess this possibility, we prepared LCLs and purified B-cells from the same donors, and comp
265 radiosensitive lymphoblastoid cell lines (RS-LCLs) derived from patients with undiagnosed diseases.
272 and B cells are of small magnitude, and that LCLs can often recapitulate the naturally occurring gene
275 derived from the microbial community in the LCL, and here we describe a gene for a novel mercuric re
276 NAc, although observed on the surface of the LCL strain during the late stationary growth phase was h
278 % of gene expression differences between the LCLs of humans, chimpanzees, and rhesus macaques may be
279 n the promoters of genes up-regulated in the LCLs compared with the B-cells, and could be involved in
283 this biosensor technology can be applied to LCLs, despite their suspension cell nature, in order to
284 ithelial cells, B cells, and EBV-transformed LCLs, (ii) EBNA3C binds with wild-type H2AX but not with
287 Our data indicate that while this is true, LCL-level LMP1 expression and NF-kappaB activity are not
289 gulated gene silencing complex) in untreated LCLs from women with PMDD, with more than half of these
294 bnormalities, we sought to determine whether LCLs from Sibs share ASD-associated mitochondrial abnorm
295 es (LCLs) from 75 sequenced individuals with LCL-specific Hi-C and ChIA-PET-based chromatin contact m
297 t of AnxA1 levels in sera from patients with LCL or ML revealed that ML patients had higher levels of
298 rowth phase promastigotes from patients with LCL, compared with those from patients with MCL, and bot