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1 nce relationships as a single finite ergodic Markov chain.
2 nsecutive state sequence was a heterogeneous Markov chain.
3 riate normal across loci using a Monte Carlo Markov chain.
4 uted IP3Rs, each represented by a four-state Markov chain.
5 e hidden states evolve along the genome as a Markov chain.
6 ithout good bounds on the mixing time of the Markov chain.
7 hannel flux were examined using finite-state Markov chains.
8 edictive model of musical structure based on Markov chains.
9 y, based on the concept of spatial absorbing Markov chains.
10 on the theory of continuous-time homogeneous Markov Chains.
11 (gj) records, we transformed an S36SM into a Markov chain 36-state model (MC36SM) of GJ channel gatin
12 ion indicates that the subsampling bootstrap Markov chain algorithm substantially reduces computation
14 n occur in accordance with a continuous time Markov Chain along the branches of a phylogenetic tree a
15 xponential of the underlying continuous-time Markov chain also show promise, especially in view of re
17 states from long random trajectories on the Markov chain and compare these with the rank of the pres
19 simulation, construction of continuous-time Markov chains and various export formats which allow mod
20 based approach is built on a continuous time Markov chain, and it is capable of evaluating the state
23 A theoretical analysis based on microscopic Markov-chain approach is presented to explain the numeri
25 long the lines of optimal prediction for the Markov chains associated with the dynamics on these netw
27 sent an interesting paper that discusses non-Markov-chain-based approaches to fitting Bayesian models
28 ever, readers should be aware that other non-Markov-chain-based methods are currently in active devel
29 wever, Bayesian models do not always require Markov-chain-based methods for parameter estimation.
30 perience confirms that students WANT to know Markov chains because they hear about them from bioinfor
32 The method avoids the use of a Monte Carlo Markov chain by employing priors for which the likelihoo
34 twork models, interpreted as continuous-time Markov chains, can be distinguished from each other unde
35 ce was computed for the distance between two Markov chains, constructed from the transition matrices
37 ential equations (ODE) and a continuous-time Markov chain (CTMC) model, are developed for spread of h
38 of control theory via the design of optimal Markov chain decision processes, mainly in the framework
39 nd use them to show that the continuous-time Markov chain describing allele frequency change with exc
40 other measures of complexity associated with Markov chain dynamical systems models of progression.
41 els were built using a series of interlinked Markov chains, each representing age increments of the N
42 usted transition probability matrix for this Markov chain enables the calculation of eigenvector valu
43 el the background sequences with Fixed Order Markov Chain (FOMC) yielding promising results for the c
44 are discrete binding events are modeled by a Markov chain for the encounter of small targets by few B
45 We show that the use of parallel Monte Carlo Markov chains for the exploration of the species space e
46 re a dynamical solution concept based on the Markov chain formalism, Conley's Fundamental Theorem of
47 WKB theory and directly treat the underlying Markov chain (formulated as a birth-death process) obeye
50 WQuadv1C BeadChip array and imputed with the Markov Chain Haplotyping algorithm using the HapMap 3 re
56 osed-form solutions, we employ a Monte Carlo Markov Chain (MCMC) approach to perform classification.
58 thods (classical and inverse), a Monte Carlo Markov Chain (MCMC) estimation was used to generate sing
62 del accounting for UH in all vital rates and Markov chain methods to calculate demographic outcomes.
63 rocess, the TKF91 model is a continuous-time Markov chain model composed of insertion, deletion, and
65 We illustrate the approach using a simple Markov chain model to capture sequential dependencies be
66 from 1985 to 2011 for 598 216 adults, into a Markov chain model to estimate remaining lifetime diabet
67 ired fish of varying boldness, and we used a Markov Chain model to infer the individual rules underly
71 We base our method on an arbitrary-order Markov chain model with community structure, and develop
73 astic compartmental model (a continuous time Markov chain model) with both horizontal and vertical tr
74 eviation with respect to the continuous time Markov chain model, and we show that the new approach is
78 mechanisms are combined into a comprehensive Markov-chain model of navigation that quantitatively pre
80 fects modeling, medoid-based clustering, and Markov chain modeling were used to analyze community tem
84 f puffs and sparks, we formulate and analyze Markov chain models of Ca(2+) release sites composed of
87 change to species dynamics via multispecies Markov chain models reveals strong links between in situ
88 (MSCE) models are a class of continuous-time Markov chain models that capture the multi-hit initiatio
89 ers was estimated using the "slice sampling" Markov Chain Monte Carlo (MCMC) algorithm implemented in
91 cally accounts for missing values based on a Markov chain Monte Carlo (MCMC) algorithm that incorpora
97 decreased computational cost relative to the Markov chain Monte Carlo (MCMC) algorithms that have gen
98 ds for summarizing the results of a Bayesian Markov chain Monte Carlo (MCMC) analysis of population s
99 thogen during an outbreak, we use a Bayesian Markov Chain Monte Carlo (MCMC) approach to estimate tim
101 of self-seeding of primary tumors, we use a Markov chain Monte Carlo (MCMC) approach, based on large
102 abolism and proposes to use the results of a Markov chain Monte Carlo (MCMC) based flux balance analy
104 Statistical modeling applying a Bayesian Markov chain Monte Carlo (MCMC) framework to the environ
106 nrichment measurement methods by combining a Markov chain Monte Carlo (MCMC) matrix factorization alg
107 ctures of shales are reconstructed using the markov chain monte carlo (MCMC) method based on scanning
108 correlation in exon splicing patterns, and a Markov chain Monte Carlo (MCMC) method coupled with a si
109 describe a coalescent-based full-likelihood Markov chain Monte Carlo (MCMC) method for jointly estim
110 resent a new C implementation of an advanced Markov chain Monte Carlo (MCMC) method for the sampling
111 to the total ILI signal is estimated using a Markov Chain Monte Carlo (MCMC) method upon forecast agg
114 with many markers can only be evaluated with Markov chain Monte Carlo (MCMC) methods that are slow to
115 ting process, which was implemented by using Markov chain Monte Carlo (MCMC) methods, significantly r
120 ally, MACAU uses a computationally expensive Markov Chain Monte Carlo (MCMC) procedure, which cannot
122 sensitivity and specificity compared with a Markov Chain Monte Carlo (MCMC) sampling inference algor
123 archies using a combination of heuristic and Markov chain Monte Carlo (MCMC) sampling procedures and
124 from sequence data using Bayes' theorem and Markov chain Monte Carlo (MCMC) sampling, which is widel
125 lux balance analysis, knockout analysis, and Markov Chain Monte Carlo (MCMC) sampling, which may limi
126 ity using the profile likelihood method, the Markov chain Monte Carlo (MCMC) technique, and the exten
127 r widespread application is the power of the Markov chain Monte Carlo (MCMC) techniques generally use
129 elop a Bayesian full-likelihood method using Markov Chain Monte Carlo (MCMC) to estimate background r
131 ariables and sampled via Metropolis-Hastings Markov chain Monte Carlo (MCMC), enabling systematic sta
132 riables from the posterior distribution with Markov Chain Monte Carlo (MCMC), using the recently prop
134 n via iterated filtering (MIF), and particle Markov chain Monte Carlo (pMCMC)--and three ensemble fil
135 , and a parallel computing algorithm for the Markov chain Monte Carlo -based posterior inference and
136 erated through the publicly available method Markov chain Monte Carlo 5C (MCMC5C) illustrated the out
138 d the corresponding P-values are computed by Markov chain Monte Carlo algorithm for Gaussian mixed li
144 ce under this model, we present an efficient Markov chain Monte Carlo algorithm to sample rooted netw
153 r involve computationally intensive Bayesian Markov chain Monte Carlo algorithms that do not scale we
154 ecause of the computational demands of using Markov Chain Monte Carlo algorithms to estimate paramete
155 BP algorithm compares in quality with exact Markov Chain Monte Carlo algorithms, yet BP is far super
159 a rank was assigned to each treatment after Markov Chain Monte Carlo analyses to create a surface un
162 intractable and approximate methods such as Markov chain Monte Carlo and Variational Bayes (VB) are
163 We model the inferred deformation using a Markov chain Monte Carlo approach to solve for change in
167 on (LS) and Approximate Bayesian Computation Markov chain Monte Carlo estimation (ABC-MCMC), to infer
169 Parameter estimation is carried out using a Markov chain Monte Carlo expectation-maximization (MCMC-
171 stochastic clock network ensemble fitted by Markov Chain Monte Carlo implemented on general-purpose
172 d phylogenies reconstructed through Bayesian Markov chain Monte Carlo inference indicated that these
174 tation involves imputation steps within each Markov chain Monte Carlo iteration and Monte Carlo integ
176 nt and recessive models was performed by the Markov chain Monte Carlo linkage analysis method, MCLINK
178 stimate parameters of the mixture model, and Markov chain Monte Carlo method is employed to perform B
179 less, we successfully implemented a two-step Markov chain Monte Carlo method that we called "BICME",
182 For parameter estimation, we use a modern Markov Chain Monte Carlo method which allows full uncert
183 were analyzed using Bayesian reasoning and a Markov chain Monte Carlo method with a set of simultaneo
191 derlying assumption for many of the proposed Markov Chain Monte Carlo methods is that the data repres
192 inferred using slow sampling methods such as Markov Chain Monte Carlo methods or faster gradient base
193 yesian framework using data augmentation and Markov chain Monte Carlo methods to estimate variation i
197 ing particle filtering methods with Bayesian Markov chain Monte Carlo methods, we are able to fit a w
206 ble desktop application that uses a Bayesian Markov chain Monte Carlo procedure to estimate the poste
207 time series of flour beetles, we found that Markov chain Monte Carlo procedures for fitting mechanis
209 gins and automated the process of setting up Markov Chain Monte Carlo runs for RNA alignments in Stat
210 ach samples inheritance vectors (IVs) from a Markov Chain Monte Carlo sampler by conditioning on geno
211 hood can be explored using a straightforward Markov chain Monte Carlo sampler, but one further post-p
212 ferred relative expression is represented by Markov chain Monte Carlo samples from the posterior prob
213 etric Bayesian clustering methods, efficient Markov Chain Monte Carlo sampling and novel subsampling
215 h a Bayesian framework and trans-dimensional Markov chain Monte Carlo sampling in order to assess eac
219 tional regression-based model emulation with Markov Chain Monte Carlo sampling to calibrate three sel
220 These Bayesian methods (with the aid of Markov chain Monte Carlo sampling) provide a generalizab
224 e fit the model using Bayesian inference and Markov chain Monte Carlo simulation to successive snapsh
225 random-effects models using vague priors and Markov chain Monte Carlo simulation with Gibbs sampling,
228 to apply the Bayesian approach executed with Markov chain Monte Carlo simulations using two data sets
230 exity (PLEX) is a flexible and fast Bayesian Markov chain Monte Carlo software program for large-scal
233 nting for these features directly and employ Markov chain Monte Carlo techniques to provide robust in
234 oach to meta-regression analysis, which uses Markov chain Monte Carlo techniques, to assess the relat
236 ted models called Bayesian networks, and use Markov chain Monte Carlo to draw samples from posterior
238 le-emitter fitting that uses Reversible Jump Markov Chain Monte Carlo to identify and localize the em
239 g bayesian hierarchical models estimated via Markov chain Monte Carlo using United Nations population
242 to Robust Estimates of ALelle frequency, via Markov chain Monte Carlo, and Complexity Of Infection us
243 zed model, the inference algorithms, such as Markov chain Monte Carlo, reliably and quickly find the
244 then used Bayesian inference, in the form of Markov chain Monte Carlo, to learn model parameter distr
253 hylogenetic reconstruction, using a Bayesian Markov-chain Monte Carlo approach; (2) evaluation of vir
254 on as a prior probability distribution for a Markov-chain Monte Carlo evaluation of the posterior for
256 generated from a nonidentifiable model, the Markov-chain Monte Carlo results recover much more infor
258 We use epidemiological models, Bayesian Markov-chain Monte Carlo, and advanced spatial statistic
259 ion in heterogeneous landscapes and Bayesian Markov-chain-Monte-Carlo inference to estimate dispersal
260 to reduce the state space of the underlying Markov chain of a PBN based on a criterion that the redu
261 x local operator, such as the generator of a Markov chain on a large network, a differential operator
262 under a simple population dynamics model, a Markov chain on the fold network is constructed, and the
263 onstructing and sampling from a finite-state Markov chain on the proposed points such that the overal
264 e present a practical method for simplifying Markov chains on a potentially large state space when de
265 this paper, we describe a methodology called Markov Chain Ontology Analysis (MCOA) and illustrate its
270 ape connectivity, and that spatial absorbing Markov chains provide a generalisable and powerful frame
272 s of 2-component mixtures of continuous-time Markov chains, representing two sub-populations with dis
273 ov Chain Monte Carlo algorithm with Multiple Markov Chain sampling to model local reconnection on 491
274 and time-resolved emission measurements and Markov chain simulations, we show that YO-to-YO resonanc
276 ylo-grammars, probabilistic models combining Markov chain substitution models with stochastic grammar
277 following: Given the presented state in the Markov chain, take a random walk from the presented stat
278 sis such as solution of scalar equations and Markov chain techniques, as well as numerical simulation
279 an observed version of the unobserved hidden Markov chain that generates one of the two interacting p
280 transition of each parcel is described by a Markov chain that incorporates the successional dynamics
281 ed association rules constituting an ergodic Markov chain, the overall most important rules in the it
286 ult in inoculation into people and applied a Markov chain to estimate the number of severe adverse ev
289 ve several powerful algorithms, ranging from Markov Chains to message passing to gradient descent pro
290 landscape with the algebraic properties of a Markov chain transition matrix and allows us to derive g
291 represented as a bipartite network, to which Markov chain updates (switching-steps) are applied.
292 al flows and transition probabilities of the Markov chain, verified against computational fluid dynam
294 etect that a presented state of a reversible Markov chain was not chosen from a stationary distributi
296 f probabilistic Boolean networks is a finite Markov chain, we define the network sensitivity based on
297 given a value function for the states of the Markov chain, we would like to show rigorously that the
298 n is the large state space of the underlying Markov chain, which poses a serious computational challe
299 nd modern treatment of Mendel's laws using a Markov chain will make this step possible, and it will o
300 amics are modeled according to a first-order Markov chain, with containment represented as an absorbi