ライフサイエンスコーパス: MeSH

1 MeSH enables the extraction of broader meaning from the

2 MeSH terms and subheadings are organized in a hierarchic

3 MeSH terms are finally recommended with a unified classi

4 We introduce a MeSH-based method that accurately quantifies similarity

5 Using a MeSH profile-based strategy, we were able to achieve max

6 to integrate multiple evidence for accurate MeSH annotation by using 'learning to rank'.

7 bulary statistics from titles, abstracts and MeSH terms to identify the most frequently occurring key

8 e MMPA-CoA pathway for MMPA assimilation and MeSH production.

9 ry 2024 and May 2025 using keyword-based and MeSH term-based queries, filtered for RCTs published bet

10 sses the two challenges in both citation and MeSH sides.

11 ine names compiled from ATCC, Hyper CLDB and MeSH.

12 ation analysis, hierarchical clustering, and MeSH term filtration) were performed on isolated culture

13 ive of specific environmental conditions and MeSH emission schemes based on previous experimental stu

14 ed on the UMLS, which contains SNOMED CT and MeSH, significantly outperformed those based solely on S

15 opionate (DMSP) is a major source of DMS and MeSH, but both also result from S-methylation of H(2)S v

16 ification criteria, incorporating Emtree and MeSH terms with Boolean and proximity operators.

17 ing a combination of linguistic features and MeSH terms.

18 and a digital abstract containing the GO and MeSH annotations in the NLM/PubMed format.

19 e source-text by looking at word, N-gram and MeSH-term distributions.

20 evant proportions of bonded forms of H2S and MeSH (93% and 47% on average); (2) such % decreases with

21 fter 7weeks of anoxia levels of free H2S and MeSH were high and similar regardless of the copper trea

22 Free and total forms of H2S and MeSH were measured at different times.

23 Cochrane Library with relevant keywords and MeSH terms from inception to June 2023 (no language rest

24 Keywords and MeSH terms, including "smartphone," "eye diseases," and

25 formation dominates for whites and roses and MeSH.

26 udy implies that the importance of H(2)S and MeSH S-methylation pathways in marine environments is si

27 -methylation of H(2)S via MddA, an H(2)S and MeSH S-methyltransferase whose gene is abundant in soil

28 o challenging aspects: the citation side and MeSH side.

29 od relies on co-occurrence of text words and MeSH terms to find keywords that are related to each MeS

30 proves the performance of a state-of-the-art MeSH indexer.

31 texts using controlled vocabularies such as MeSH can be automated to improve text-only IR.

32 re analyzed on the basis of indexer-assigned MeSH terms.

33 e, Medical Text Indexer (MTI), for assisting MeSH annotation, which uses k-nearest neighbors (KNN), p

34 ch utilizes deep learning and self-attentive MeSH probes to index MeSH terms.

35 separately), can also be used for automatic MeSH annotation.

36 iated with manual annotation, many automatic MeSH indexing systems have been proposed to assist manua

37 Furthermore, the automatic MeSH annotation system we propose is highly scalable and

38 ucted using key words in combination as both MeSH terms and text words.

39 types of information, such as prediction by MeSH classifiers (trained separately), can also be used

40 h the keywords for MeSH terms, and candidate MeSH terms are ranked based on their relatedness to the

41 pus and the MEDIC vocabulary, which combines MeSH(R) and OMIM.

42 eption and Oct 12, 2020, using comprehensive MeSH and keyword terms for "viral infection", "transcrip

43 sing our framework, users can easily conduct MeSH ORA.

44 similarity measures derived from SNOMED CT, MeSH, and the UMLS on recently developed semantic simila

45 Currently, MeSH indexing is manually performed by human experts.

46 R packages, including MeSH.db, MeSH.AOR.db, MeSH.PCR.db, the org.MeSH.XXX.db-type packages, MeSHDbi,

47 six types of R packages, including MeSH.db, MeSH.AOR.db, MeSH.PCR.db, the org.MeSH.XXX.db-type packa

48 y the S-adenosine methionine (SAM)-dependent MeSH and H(2)S S-methyltransferase 'MddH', which is wide

49 g, MTI and the correlation between different MeSH terms, etc.

50 information can be extracted with different MeSH probes and interpretability can be achieved at word

51 ological cross mappings resource between DO, MeSH and OMIM (e.g. GeneWiki).

52 Each MeSH classifier is trained independently, and thus predi

53 Each MeSH probe enables the model to extract one specific asp

54 might have to be tuned individually for each MeSH heading.

55 ms to find keywords that are related to each MeSH term.

56 Biologists can use either MeSH terms as queries or the MeSH interface provided in

57 By utilizing the enriched MeSH terms, related PubMed documents can be retrieved an

58 However, the existing MeSH ORA software platforms are still not sufficient for

59 which allows users to enter queries to find MeSH terms closely related to the queries.

60 and EMBASE was completed using the following MeSH search terms: quality of life, burnout, surgeon, su

61 nd 2018 that were indexed with the following MeSH terms: nervous system diseases, immune system disea

62 Accounting for MeSH emissions reduces the radiative bias of current cli

63 effectively integrate multiple evidence for MeSH annotation.

64 query is then matched with the keywords for MeSH terms, and candidate MeSH terms are ranked based on

65 previously reported chemical mechanisms for MeSH oxidation, along with additional improvements, high

66 pper levels, related to lower levels of free MeSH, and norisoprenoids, responsible for white fruit an

67 eSH annotations of some of the most frequent MeSH headings.

68 st recent medical literature identified from MeSH terms: extracorporeal membrane oxygenation, cardiog

69 Evidence includes numerous predictions from MeSH classifiers, KNN, pattern matching, MTI and the cor

70 ning a selection of adverse event terms from MeSH, based on information content, can improve the dete

71 ll with large amounts of text using the full MeSH thesaurus.

72 d symbols, links to annotation data from GO, MeSH and PubMed and normalizes the descriptions of inter

73 using free-text and Medical Subject Heading (MeSH) terms according to Preferred Reporting Items for S

74 ed and Scopus using Medical Subject Heading (MeSH) terms for hyperparathyroidism, parathyroid hormone

75 pathways and PubMed Medical Subject Heading (MeSH) terms, and performed pathway enrichment and pathwa

76 medical articles by Medical Subject Heading (MeSH), namely MeSH indexing, has become increasingly imp

77 pts in the form of Medical Subject Headings (MeSH terms) obtained from the PubMed database that are s

78 Medical Subject Headings (MeSH((R))) is a controlled vocabulary for indexing and s

79 System (UMLS) and Medical Subject Headings (MeSH) are widely used for biomedical natural language pr

80 Ontology (GO) and Medline Subject Headings (MeSH) categorization of text passages, the retrieval of

81 g as reference the Medical Subject Headings (MeSH) controlled vocabulary.

82 MetDisease uses Medical Subject Headings (MeSH) disease terms mapped to PubChem compounds through

83 step performed on Medical Subject Headings (MeSH) ensures that papers are prioritised based on speci

84 Medical Subject Headings (MeSH) indexing, which is to assign a set of MeSH main he

85 2021 using search Medical Subject Headings (MeSH) terms consciousness disorders, confusion, causalit

86 The network linked Medical Subject Headings (MeSH) terms of genes, diseases and drugs that co-occurre

87 Recently, Medical Subject Headings (MeSH) terms, which are annotations of PubMed documents,

88 inical notes using Medical Subject Headings (MeSH) terms.

89 laries such as the Medical Subject Headings (MeSH) thesaurus and the Gene Ontology (GO) provide an ef

90 Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge

91 s are indexed with Medical Subject Headings (MeSH), which is a controlled vocabulary curated by the N

92 dentified by using medical subject headings (MeSH).

93 Medical Subject Headings (MeSHs) are used by National Library of Medicine (NLM) to

94 g PubMed, MEDLINE (Medical Subject Headings [MeSH]), and EMBASE to include recently published treatme

95 from descriptions of TF-related concepts in MeSH and GO, PPI data and data representing non-protein-

96 l or ethnic minority groups was reported (in MeSH terms, journal titles, and MEDLINE fields) in less

97 Search terms included MeSH (medical subject heading) terms and keywords associ

98 mposed of six types of R packages, including MeSH.db, MeSH.AOR.db, MeSH.PCR.db, the org.MeSH.XXX.db-t

99 ning and self-attentive MeSH probes to index MeSH terms.

100 Check Tags, a set of most frequently indexed MeSH headings.

101 ovides a natural way of combining individual MeSH vocabularies.

102 rning algorithms and features for individual MeSH headings could further increase the performance of

103 ch achieves better performance on infrequent MeSH headings.

104 s, MEDLINE fields (title, abstract, journal, MeSH and chemical) and terms (MeSH qualifiers and descri

105 versus VKA-ICH using an appropriate keyword/MeSH term search strategy.

106 terms by aggregating them into higher-level MeSH terms based on the terms' information content.

107 erms of reproducing and complementing manual MeSH annotations.

108 asurements demonstrate to what extent manual MeSH annotations can be reproduced and how they can be c

109 and produced monthly fields of global marine MeSH emissions adding to DMS emissions.

110 in the development of H2S and methanethiol (MeSH) along anoxic storage of wines, 24 wines were store

111 ase the levels of free H2S and methanethiol (MeSH); 2) slow the rate at which free H2S (not MeSH) inc

112 ors to hydrogen sulfide (H2S), methanethiol (MeSH), ethanethiol (EtSH), and dimethyl sulfide (DMS) we

113 impact of oceanic emissions of methanethiol (MeSH), a sulfur compound produced by the same oceanic pr

114 This pathway releases methanethiol (MeSH) instead of the climatically active gas dimethylsul

115 Hydrogen sulfide (H(2)S), methanethiol (MeSH) and dimethylsulfide (DMS) are abundant sulfur gase

116 Hydrogen sulfide (H(2)S), methanethiol (MeSH) and ethanethiol (EtSH) are volatile sulfur compoun

117 ng is not routed to DMS but to methanethiol (MeSH), another volatile whose reactivity has hitherto ha

118 emethylation pathway, yielding methanethiol (MeSH), which is readily assimilated or oxidized.

119 ented into a global chemistry-climate model, MeSH emissions increase the sulfate aerosol burden by 30

120 Copper and pH were important in modulating MeSH and EtSH accumulation in wines.

121 es by Medical Subject Heading (MeSH), namely MeSH indexing, has become increasingly important for fac

122 SH); 2) slow the rate at which free H2S (not MeSH) increases during anoxic storage.

123 wines, and vescalagin/castalagin adducts of MeSH and EtSH were subsequently produced.

124 rent methods of automating the assignment of MeSH concepts have been proposed to replace manual annot

125 A combination of MeSH terms and free-text words about the overuse of surg

126 nguage publications using the combination of MeSH terms, free terms, and key words.

127 , the global emissions and climate impact of MeSH remain unexplored.

128 These results point to the importance of MeSH for efforts aimed at improving the modeled represen

129 h extensive cross mapping and integration of MeSH, ICD, NCI's thesaurus, SNOMED CT and OMIM disease-s

130 C, up to 400 mug/L of H(2)S and 58 mug/L of MeSH can be released in 68 days, and 3-5 times more at 7

131 The gas-phase oxidation of MeSH has a higher effective yield of SO(2) and a shorter

132 their ability to ameliorate the presence of MeSH and EtSH were studied in model systems and wines, a

133 (MeSH) indexing, which is to assign a set of MeSH main headings to citations, is crucial for many imp

134 and Web of Science databases using a set of MeSH terms and related synonyms and identified 73 eligib

135 We prove that sets of MeSH terms provide a highly descriptive representation o

136 heritable disease and that the structure of MeSH provides a natural way of combining individual MeSH

137 they are either limited to a small subset of MeSH or have only been compared with a limited number of

138 n relation to their precursors, than that of MeSH with N-methylmaleimide and, in general, with H(2)C

139 In particular, we explore the use of MeSH terms, manually assigned to documents by trained an

140 OMIM((R)) and evaluate the results based on MeSH((R)) term assignments.

141 ge with Cytoscape; query facilities based on MeSH/GO terms and other concepts; approximate graph matc

142 h have been previously used and a novel one: MeSH terms.

143 performed those based solely on SNOMED CT or MeSH across evaluations.

144 g MeSH.db, MeSH.AOR.db, MeSH.PCR.db, the org.MeSH.XXX.db-type packages, MeSHDbi, and meshr.

145 In this work, we developed an original MeSH ORA framework composed of six types of R packages,

146 50, 0.1435 and 0.1782, respectively, for our MeSH term-based method versus the maximum baseline score

147 In particular, MeSH terms have proved to be useful and should be used i

148 This pathway and the ability to produce MeSH from MMPA are present in diverse bacteria, and the

149 ed by the NLM Indexing Initiative to provide MeSH indexing recommendations to indexers.

150 a medical librarian, we identified relevant MeSH terms and used them for searching the literature: h

151 and EMBASE (2002-April 2012) using relevant MeSH terms and keywords.

152 nowledge from existing biological resources (MeSH and GO) to engineer such features.

153 gical tannins significantly decreased H(2)S, MeSH, and EtSH in model wine by up to 92 %, 90 % and 86

154 Over the past years, many large-scale MeSH indexing approaches have been proposed, such as Med

155 Large-scale MeSH indexing has two challenging aspects: the citation

156 We propose FullMeSH, a large-scale MeSH indexing method taking advantage of the recent incr

157 es deep semantic information for large-scale MeSH indexing.

158 We compiled a database of seawater MeSH concentrations, identified their statistical predic

159 cts of the reaction of methanethiol (CH(3)SH/MeSH, as a simple model of Cys) with N-methylated ethyne

160 We compare the performance of six MeSH classification systems [MetaMap, EAGL, a language a

161 re is no convenient way to link standardized MeSH terms to user queries.

162 nput to MTI to use in the task of suggesting MeSH headings to indexers.

163 ract, journal, MeSH and chemical) and terms (MeSH qualifiers and descriptors, keywords, author, gene

164 nes and proteins), GO (Gene Ontology) terms, MeSH (Medical Subject Headings) terms, pathways and prot

165 e sulfur budget, our findings highlight that MeSH plays a significant role in SO(2) production in the

166 The MeSH side challenge is solved by using the 'learning to

167 identify observational studies, we added the MeSH terms case-control study and retrospective study.

168 les found with the keyword "surgery" and the MeSH term for statins "hydroxymethylglutaryl-CoA reducta

169 PubMed, Medline, Embase, Scopus database the MeSH terms and keywords of "vitamin D," "(25(OH)D)," "el

170 data sources (e.g. TF-related data from the MeSH thesaurus and GO ontology) or potentially noisy exa

171 we pool genes within disease subtrees in the MeSH taxonomy, and we demonstrate that such pooling impr

172 dexing performance might be dependent on the MeSH heading being indexed.

173 can use either MeSH terms as queries or the MeSH interface provided in PubMed((R)) for searching Pub

174 edical texts as features for reproducing the MeSH annotations of some of the most frequent MeSH headi

175 the past three months that are linked to the MeSH term 'neoplasms"; (2) 'using a neuropeptide precurs

176 arches from 1966 through June 1997 using the MeSH headings of "taste," "taste buds," "taste disorders

177 matic literature search in MEDLINE using the MeSH headings, "death, sudden" OR the terms "sudden card

178 A MEDLINE search was performed using the MeSH term cardiovascular disease limited to randomized c

179 omplete publications were obtained using the MeSH terms procalcitonin, C-reactive protein, sepsis, an

180 mbase was undertaken in April 2016 using the MeSH terms: patient participation and critical care.

181 A MEDLINE search was conducted with the MeSH of anaphylaxis, anaphylactic reaction, anaphylactic

182 Two thirds of articles indexed with the MeSH term cost control did not include cost figures.

183 A MEDLINE search was conducted with the MeSH terms angioedema, acquired angioedema, hereditary a

184 hyl thioacetate were important precursors to MeSH, and produced maximum yields of 72% and 33%, respec

185 S and DMTS, while tannic acid was related to MeSH, both the behaviors occurring under oxic condition.

186 It will map query results to MeSH topics to facilitate the exploration of the biologi

187 The search used MeSH terminology such as periodontal maintenance, emotio

188 t word $ in the abstract and the most useful MeSH index term of cost-benefit analysis appeared with n

189 Database searches were performed using MeSH terms, keywords, and title words.

190 lished from 2015 to 2021 were searched using MeSH descriptors in three major databases (MEDLINE Ovid,

191 and the Cochrane Library were searched using MeSH terms and keywords.

192 ed and Cochrane Library) were searched using MeSH terms: primary care, roles, and responsibilities.

193 ter of Controlled Trials were searched using MeSH, EMTREE terms, keywords, and keyword phrases for th

194 linical trials (RCTs) of HF treatments using MeSH (medical subject heading) terms and keywords associ

195 more general set of abstracts annotated with MeSH (Medical Subject Headings) term Bacteria (Bacteria_

196 user's query is automatically annotated with MeSH concepts, compared to using the original textual qu

197 ticenter cardiovascular RCTs associated with MeSH (Medical Subject Headings) terms for cardiovascular

198 A MEDLINE search was conducted with MeSH terms: cardiogenic shock, percutaneous mechanical c

199 on in the marine atmosphere in parallel with MeSH oxidation.

200 d bibliographic databases were searched with MeSH terms and keywords or combinations: MEDLINE through

201 ntify relevant published data regarding ZIKV MeSH searches.