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1 le for genetic studies in the archaeal genus Methanosarcina.
2 stic methanogenesis in both Methanosaeta and Methanosarcina.
3 ed a markerless tRNA(Pyl) deletion strain of Methanosarcina acetivorans (DeltapylT) that cannot decod
4 t comparison of histones from M. jannaschii, Methanosarcina acetivorans (largest Archaeal genome, 5.8
5 ere identified in M. jannaschii (Mj0601) and Methanosarcina acetivorans (Ma2851), and recombinant Ma2
6 TLPs from Bacillus thuringiensis (BtTLP) and Methanosarcina acetivorans (MaTLP) display biochemical p
7 naturally "truncated" homologs of NifB from Methanosarcina acetivorans (NifB(Ma)) and Methanobacteri
8 old/one zinc finger replication protein A in Methanosarcina acetivorans and Methanopyrus kandleri exh
10 nesis, methyl-coenzyme M reductase (MCR), in Methanosarcina acetivorans and tested whether its cellul
11 e isozymes of methanol methyltransferases in Methanosarcina acetivorans C2A and are among the most hi
15 clones were isolated after transformation of Methanosarcina acetivorans C2A with the mutagenized plas
16 en in this process, we tested the ability of Methanosarcina acetivorans C2A, a metabolically versatil
17 oson mutagenesis of a methanogenic archaeon, Methanosarcina acetivorans C2A, which because of its ind
22 a methanogen into an acetogen and show that Methanosarcina acetivorans can dispense with methanogene
23 lyses to study the structure/function of the Methanosarcina acetivorans clamp loader or replication f
24 rolysine, a 761 base-pair genomic segment in Methanosarcina acetivorans containing the pylT gene (enc
29 on of the slow-growing methanogenic archaeon Methanosarcina acetivorans Introduction of both insertio
30 multiheme c-type cytochrome called MmcA from Methanosarcina acetivorans is important for intracellula
31 ation of McrA from the methanogenic archaeon Methanosarcina acetivorans lacking tfuA and/or ycaO reve
32 se 1 operons (mtaCB1, mtaCB2, and mtaCB3) in Methanosarcina acetivorans led to the suggestion that ea
34 n methanol-grown cells of the marine isolate Methanosarcina acetivorans metabolically labeled with 14
36 onance analyses to establish histidine-43 of Methanosarcina acetivorans NifB (MaNifB) as the nitrogen
37 containing NifB protein upon coexpression of Methanosarcina acetivorans nifB, nifS, and nifU genes al
38 standing of this family, a flavoredoxin from Methanosarcina acetivorans of the Archaea domain was pro
42 , 3046 unique peptides covering 566 distinct Methanosarcina acetivorans proteins were identified from
43 tandem polypeptide repeats that comprise the Methanosarcina acetivorans S-layer protein and propose a
44 haea and that the polymerase from mesophilic Methanosarcina acetivorans shows identical behaviour.
47 ein the purification and characterization of Methanosarcina acetivorans subunit D in complex with sub
48 MacDinB-1, the homolog from the euryarchaeon Methanosarcina acetivorans that is characterized in this
50 otein overproduction system was developed in Methanosarcina acetivorans to facilitate biochemical cha
51 ein 10 gene in the methane-producing archaea Methanosarcina acetivorans Using an array of approaches,
52 Here, we study the methanogenic archaeon Methanosarcina acetivorans using assays of ATP hydrolysi
53 ltisubunit sodium/proton antiporter (Mrp) of Methanosarcina acetivorans was investigated with a mutan
54 rotein MA4561 from the methanogenic archaeon Methanosarcina acetivorans was originally predicted to b
55 ologs (TBP1, TBP2, and TBP3) in the archaeon Methanosarcina acetivorans were investigated by using ge
56 opy (cryo-EM) structure of the ribosome from Methanosarcina acetivorans, a previously unreported high
58 ization of an unusual flavodoxin (FldA) from Methanosarcina acetivorans, an acetate-utilizing methane
59 iogenesis in the model methanogenic archaeon Methanosarcina acetivorans, and have also identified sub
60 nococcus jannaschii, Archaeoglobus fulgidus, Methanosarcina acetivorans, and Methanosarcina barkeri p
61 chaeoglobus fulgidus, Methanopyrus kandleri, Methanosarcina acetivorans, and Methanosarcina mazei.
62 hlorobaculum tepidum, Magnetococcus marinus, Methanosarcina acetivorans, as well as revisiting the si
63 bacterial Cas9 protein for genome editing in Methanosarcina acetivorans, enabling efficient gene dele
64 SH) on >14 500 archaeal and bacterial cells (Methanosarcina acetivorans, Sulfolobus acidocaldarius an
67 a representative of this new group of RPA in Methanosarcina acetivorans, we made two deletion mutants
68 termed Hsp60-4 and Hsp60-5, in the archaeon Methanosarcina acetivorans, which also has Hsp60-1, Hsp6
80 Although the aceticlastic methanoarchaea Methanosarcina and Methanosaeta employ different enzymes
83 h electron uptake mechanism of a methanogen, Methanosarcina barkeri (M. barkeri), by coculturing it w
86 nitrogenase structural genes (nifHDK2) from Methanosarcina barkeri 227 was completed in this study b
87 tial reactions of acetyl-CoA cleavage by the Methanosarcina barkeri acetyl-CoA decarbonylase synthase
88 io desulfuricans, Desulfovibrio vulgaris and Methanosarcina barkeri AhbA/B have been produced and the
89 meric iron-sulfur protein, was isolated from Methanosarcina barkeri and is required for in vitro ATP-
90 s of these putative hydrogenases to those of Methanosarcina barkeri and Methanosarcina mazei shows th
92 extend earlier findings that the CODHs from Methanosarcina barkeri and Oligotropha carboxydovorans e
94 iting domain homologues (AlaX proteins) from Methanosarcina barkeri and Sulfolobus solfataricus hydro
95 most similar to those of the archaebacterium Methanosarcina barkeri and the delta-purple bacterium De
96 volution reaction (HER) electrocatalysts and Methanosarcina barkeri as a biocatalyst for CO2 fixation
97 an F(420) -reducing [NiFe]-hydrogenase from Methanosarcina barkeri as a model enzyme, we show that t
98 ine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrr
99 ethylamine methyltransferase of the archaeon Methanosarcina barkeri contains a rare amino acid, pyrro
100 coli strain NK3 led to the isolation of the Methanosarcina barkeri cysK gene [encoding O-acetylserin
102 lamine methyltransferase, were detectable in Methanosarcina barkeri during early log growth on trimet
110 llireducens with Geobacter sulfurreducens or Methanosarcina barkeri in which ethanol was the electron
112 onally inserted amino acid, was found in the Methanosarcina barkeri monomethylamine methyltransferase
113 a 1.55 angstrom resolution structure of the Methanosarcina barkeri monomethylamine methyltransferase
115 bility of hydrogenotrophic methanogenesis in Methanosarcina barkeri MS under simulated Martian surfac
119 that transcripts of nifHDK2 genes, encoding Methanosarcina barkeri nitrogenase, are present in N2-gr
121 cryptofilum PE (CkoPE; 117 amino acids) and Methanosarcina barkeri PE (MbaPE; 151 amino acids)--and
122 us fulgidus, Methanosarcina acetivorans, and Methanosarcina barkeri possess open reading frames with
123 hetase-tRNA(CUA) (MjTyrRS-tRNA(CUA)) and the Methanosarcina barkeri pyrrolysyl-tRNA synthetase-tRNA(C
125 lobus acidocaldarius, Haloferax volcanii and Methanosarcina barkeri the secondary structure of RNase
127 sozymes from buffer soluble cell extracts of Methanosarcina barkeri was accomplished by use of immobi
129 nechocystis PCC6803 and methanogenic archaea Methanosarcina barkeri with the redox cycling of iron, C
130 mparative analysis of the genome sequence of Methanosarcina barkeri with those of Methanosarcina acet
132 mbrane-bound NiFe-hydrogenase complexes from Methanosarcina barkeri, Escherichia coli, and Rhodospiri
134 Analyses of Methanosarcina thermophila, Methanosarcina barkeri, Methanobacterium thermoautotroph
135 fer RNA (tRNA) synthetases (SerRSs) exist in Methanosarcina barkeri, one of bacterial type and the ot
136 the metabolic networks of Escherichia coli, Methanosarcina barkeri, Staphylococcus aureus, and Sacch
137 ibody detected primarily a 50-kDa protein in Methanosarcina barkeri, which is the mass predicted for
138 omparative transcriptomics on the methanogen Methanosarcina barkeri, which was incubated at 30 C and
143 r hgcA-harboring acetoclastic strains (e.g., Methanosarcina), decreasing methanogen abundance (18-98%
145 w that the efficient acetoclastic pathway in Methanosarcina emerged at a time statistically indisting
147 ented in trans with autonomously replicating Methanosarcina-Escherichia plasmid shuttle vectors.
148 in the methanogens Methanothrix sp. MA6 and Methanosarcina flavescens MX5, which switched their meta
149 horizontally transferred to the ancestor of Methanosarcina from a derived cellulolytic organism in t
152 ) and ADP-Acs, the extant methanogenic genus Methanosarcina is the only identified Archaeal genus tha
154 elated class II photolyase from the archaeon Methanosarcina mazei (MmCPDII) as well as plantal orthol
155 Characterization of SepRS from the mesophile Methanosarcina mazei by gel filtration and nondenaturing
159 ly expressed genes of the freshwater isolate Methanosarcina mazei determined by transcriptional profi
160 the A-type molecular motor A3B3DF, from the Methanosarcina mazei Go1 A-ATP synthase, and the thermop
162 e determined three crystal structures of the Methanosarcina mazei PylRS complexed with either AMP-PNP
163 e demonstrate that stable integration of the Methanosarcina mazei pyrrolysyl-tRNA synthetase (PylRS)/
164 Using VADER we developed improved mutants of Methanosarcina mazei pyrrolysyl-tRNA, as well as a bacte
165 3', were found in the genome of the archaeon Methanosarcina mazei S-6 that encode the deduced protein
166 nases to those of Methanosarcina barkeri and Methanosarcina mazei shows that each predicted subunit c
167 the ATP:co(I)rrinoid adenosyltransferase in Methanosarcina mazei strain Go1 (open reading frame MM31
168 me (ORF) Mm2058 of the methanogenic archaeon Methanosarcina mazei strain Go1 was shown in vivo and in
169 The cbiZ gene of the methanogenic archaeon Methanosarcina mazei strain Gol was cloned, was overprod
171 s that exhibit topology simplification), and Methanosarcina mazei topo VI and Sulfolobus shibatae top
172 g ensemble biochemistry, we demonstrate that Methanosarcina mazei topo VI preferentially unlinks, or
173 dimensional (3D) structure of the 68-residue Methanosarcina mazei TRAM protein using only 72 mug (6 m
174 propose that MM1854, a homolog of AfpA from Methanosarcina mazei, catalyzes the last step of H4MPT b
176 lic activity for three methanogenic archaea: Methanosarcina mazei, M. barkeri and M. soligelidi, was
177 alophilic Archaea (Methanococcus jannaschii, Methanosarcina mazei, Methanobrevibacter smithii) are le
185 ragment of chromosomal DNA from the archaeon Methanosarcina mazeii was sequenced and analyzed, and it
187 , Pyrobaculum, Aeropyrum) and euryarchaeota (Methanosarcina, Methanococcus, Archaeoglobus, Thermoplas
188 cts translation termination, its presence in Methanosarcina mRNA may lead to pyrrolysine (Pyl) incorp
191 a strong increase of the expression level in Methanosarcina sp. was evidenced after oleate addition.
192 with multicellular life-cycle phases, e.g., Methanosarcina sp., or Anabaena sp., which have more per
193 ry selectable markers that are functional in Methanosarcina species and that express the Himar1 trans
194 de resistance to pseudomonic acid (PA(r)) in Methanosarcina species by mutagenesis of the isoleucyl-t
196 dimethylamine, or monomethylamine by various Methanosarcina species possesses one naturally occurring
197 vidence suggests that methanol catabolism in Methanosarcina species requires the concerted effort of
198 acetivorans were aligned with those in other Methanosarcina species to identify conserved transcripti
199 ency in methylamine metabolism expected of a Methanosarcina species unable to decode UAG codons as py
200 olving Ech hydrogenase complex of freshwater Methanosarcina species with the Rnf complex, which gener
201 region is well conserved among the sequenced Methanosarcina species, while the second vht-type homolo
204 is well conserved with respect to the other Methanosarcina spp. in the region proximal to the origin
205 dehydrogenase/acetyl coenzyme A synthase in Methanosarcina spp. is coordinately regulated in respons
206 sual possession of both LysRS1 and LysRS2 by Methanosarcina spp. may also reflect differences in cata
208 tate kinases from E. coli (Bacteria domain), Methanosarcina thermophila (Archaea domain), and four ot
209 ototypic gamma-class carbonic anhydrase from Methanosarcina thermophila (Cam) were characterized by s
212 etermined the three-dimensional structure of Methanosarcina thermophila acetate kinase bound to ADP t
214 , has been established in the methanoarchaea Methanosarcina thermophila and Methanococcus jannaschii.
215 two different members of the domain Archaea, Methanosarcina thermophila and Sulfolobus solfataricus.
216 e of nickel in this process two forms of the Methanosarcina thermophila beta subunit were overexpress
217 scribe the inhibition of acetate kinase from Methanosarcina thermophila by preincubation with MgCl(2)
218 cetate kinase is the homodimeric enzyme from Methanosarcina thermophila containing ADP and sulfate in
219 The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sul
221 Inspection of the crystal structure of the Methanosarcina thermophila enzyme containing only ADP re
222 recently determined crystal structure of the Methanosarcina thermophila enzyme identifies it as a mem
225 A catalytic mechanism for the enzyme from Methanosarcina thermophila has been proposed on the basi
226 ransacetylase from the methanogenic archaeon Methanosarcina thermophila in complex with the substrate
227 c analysis of the phosphotransacetylase from Methanosarcina thermophila indicated that there is a ter
228 rogenase/acetyl-CoA synthase (CODH/ACS) from Methanosarcina thermophila is part of a five-subunit com
229 k, the reaction catalyzed by the enzyme from Methanosarcina thermophila is shown to be analogous to o
231 taining carbonic anhydrase from the archaeon Methanosarcina thermophila suggests that a very similar
232 nic anhydrase from the thermophilic archaeon Methanosarcina thermophila that exhibits no significant
233 zyme complex was isolated from acetate-grown Methanosarcina thermophila that oxidized CO and catalyze
234 ataricus ATCC 35091, Haloferax volcanii, and Methanosarcina thermophila TM-1, representing the Euryar
236 way for the biosynthesis of methanopterin in Methanosarcina thermophila to proceed by the following s
237 oding an iron-sulfur flavoprotein (Isf) from Methanosarcina thermophila was cloned and sequenced.
239 The gene encoding carbonic anhydrase from Methanosarcina thermophila was hyperexpressed in Escheri
240 e catalytic mechanism of acetate kinase from Methanosarcina thermophila was investigated by diethylpy
241 The 20S proteasome from the methanoarchaeon Methanosarcina thermophila was produced in Escherichia c
242 The heterodisulfide reductase (HDR) from Methanosarcina thermophila was purified to homogeneity f
243 the prototypic gamma-carbonic anhydrase from Methanosarcina thermophila were characterized by extende
244 yl-coenzyme synthase (CODH/ACS) complex from Methanosarcina thermophila were cloned and sequenced.
245 s of the iron-sulfur flavoprotein (Isf) from Methanosarcina thermophila were identified in databases.
249 characterization of OASS from acetate-grown Methanosarcina thermophila, a moderately thermophilic me
250 t A cluster proteins, ACDS beta subunit from Methanosarcina thermophila, acetyl-CoA synthase of Carbo
251 ichia coli of the phosphotransacetylase from Methanosarcina thermophila, an obligately anaerobic meth
252 purified from the methane-producing archaeon Methanosarcina thermophila, and the N-terminal sequence
255 flavoprotein (Isf) from the methanoarchaeaon Methanosarcina thermophila, which participates in electr
262 se II, and the gamma-carbonic anhydrase from Methanosarcina thermophilain an effort to outline common
264 increase to 65 degrees C resulted in loss of Methanosarcina, with an accumulation of organic acids an