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1 NMD components, including smg-2/UPF1, are required to ac
2 NMD efficiency can be variable amongst individuals with
3 NMD in the nervous system of the animals is particularly
4 NMD inhibition with caffeine was shown to restore CHM mR
5 NMD is regulated in a tissue-specific and developmentall
6 NMD suppression by persistent DNA damage required the ac
7 NMD-elicit mutations in tumour suppressor genes (TSGs) a
8 NMD-escape fs-indels represent an attractive target for
9 NMD-escape mutations are additionally found to associate
11 isense oligonucleotides circumvents aberrant NMD promoted by mutant SRSF2, restoring the expression o
14 Finally, after validating tranilast as an NMD-activating drug, we demonstrated the therapeutic pot
15 Activating transcription factor 3 (ATF3), an NMD target and a key stress-inducible transcription fact
16 f the 51 upregulated genes, 75% contained an NMD-targeting feature, thus identifying high-confidence
19 lation of yars-2/tyrosyl-tRNA synthetase, an NMD target transcript, by daf-2 mutations contributes to
20 that neuron-specific disruption of UPF2, an NMD component, in adulthood attenuates learning, memory,
21 ay (NMD), and we found that both the EJC and NMD are antiviral and the EJC protein RBM8A directly bin
22 t expansion mutations and highlight eRF1 and NMD as therapeutic targets in C9orf72-associated ALS and
23 egulate p53beta in a synergistic manner, and NMD plays a critical role in the determination of the p5
24 gulated by Nonsense Mediated Decay (NMD) and NMD has been shown to be of variable efficiency in cance
25 on factor, was stabilized in a p38alpha- and NMD-dependent manner following persistent DNA damage.
26 echanistic relationship between splicing and NMD, we sought evidence for a specific role of mutant SR
28 as effective as UPF1, expression of another NMD gene UPF2 also ameliorated the degenerative phenotyp
30 nding of RNA surveillance mechanisms such as NMD and crucial for the development of therapeutic strat
36 bserved for AS events that are detectable by NMD as well as for those that are not, which invalidates
40 lternative distal 3'-UTR that is targeted by NMD, and (ii) RPS3 binding activates a poison 5'-splice
45 optive cell therapy treated melanoma cohort, NMD-escape mutation count is the most significant biomar
46 Across four independent melanoma cohorts, NMD-escape mutations are significantly associated with c
50 quires the interaction of NBAS with the core NMD factor UPF1, which is partially localized at the ER
53 tially regulated by Nonsense Mediated Decay (NMD) and NMD has been shown to be of variable efficiency
54 also contributes to nonsense-mediated decay (NMD) and xrn4 accumulates 3' fragments of select NMD tar
55 protect mRNAs from nonsense-mediated decay (NMD) by preventing the UPF1 RNA helicase from associatin
56 is dependent on the nonsense-mediated decay (NMD) component, Upf1, which promotes histone mRNA uridyl
59 mans, disruption of nonsense-mediated decay (NMD) has been associated with neurodevelopmental disorde
64 likely mediated by nonsense-mediated decay (NMD) of splicing isoforms, with autism phenotypes usuall
66 egraded through the nonsense-mediated decay (NMD) pathway, we hypothesise that some fs-indels escape
68 he EJC has roles in nonsense-mediated decay (NMD), and we found that both the EJC and NMD are antivir
69 1 (UPF1), including nonsense-mediated decay (NMD), are inhibited in c9ALS/FTD brains and in cultured
71 ty control process, nonsense-mediated decay (NMD), were found to genetically interact with rad55 phos
78 usion triggers nonsense-mediated mRNA decay (NMD) and unproductive translation of Bak1 transcripts (N
79 hat inhibiting nonsense-mediated mRNA decay (NMD) contributes to the pathogenesis of neurodevelopment
81 pletion of the nonsense-mediated mRNA decay (NMD) factor SMG7 or UPF1 significantly induced p53beta b
82 s required for nonsense-mediated mRNA decay (NMD) in eukaryotes, and the predominant view is that UPF
86 y machineries, nonsense-mediated mRNA decay (NMD) is a stress responsive cellular surveillance system
92 d in mediating nonsense-mediated mRNA decay (NMD) of transcripts containing premature stop codons and
93 ediated by the nonsense-mediated mRNA decay (NMD) pathway and requires a conserved set of proteins in
94 rily conserved nonsense-mediated mRNA decay (NMD) pathway degrades aberrant mRNAs, but also functions
97 illnesses, the nonsense-mediated mRNA decay (NMD) pathway presents an unexplored regulatory mechanism
99 ass of cryptic nonsense-mediated mRNA decay (NMD) substrates with extended 3'UTRs that gene- or trans
101 nisms, such as nonsense-mediated mRNA decay (NMD), which degrades both abnormal as well as some norma
114 ritical for the nonsense-mediated RNA decay (NMD) pathway, while its autosomal counterpart--UPF3A--en
115 damage inhibits nonsense-mediated RNA decay (NMD), an RNA surveillance and gene-regulatory pathway, i
116 rane of the ER and activates an ER-dedicated NMD pathway, thus providing an ER-protective function by
117 However, the mechanism by which deficient NMD leads to neurodevelopmental dysfunction remains unkn
118 ndings indicate that impaired UPF2-dependent NMD leads to neurodevelopmental dysfunction and suggest
119 known NDD genes, suggesting UPF3B-dependent NMD regulates gene networks critical for cognition and b
120 le computational approaches, UPF3B-dependent NMD target transcripts that are candidates to mediate th
122 ified UPF3B-regulated RNAs, including direct NMD target transcripts encoding proteins with known func
124 berrant p53beta expression and dysfunctional NMD are both implicated in cancers, our studies may prov
125 t beyond selecting for mutations that elicit NMD in tumor suppressors, tumor evolution may react to t
127 nts transgenic for TAV accumulate endogenous NMD-elicited mRNAs, while decay of AU-rich instability e
128 enerated by inflammation to globally enhance NMD through coordinated amplification and/or mutation.
130 We find that daf-2 mutants display enhanced NMD activity and reduced levels of potentially aberrant
132 hed in genomic positions predicted to escape NMD, and associated with higher protein expression, cons
135 However, some PTC-containing mRNAs evade NMD, and might generate mutant proteins responsible for
136 rons, allowing these aberrant mRNAs to evade NMD and promoting BCL2 overexpression and neoplasia.
138 the core NMD component UPF1 is critical for NMD and is regulated in mammals by the SURF complex (UPF
140 some core NMD factors that are essential for NMD in simpler organisms appear to be dispensable for ve
148 l Prkag3 mRNA as a mechanistic substrate for NMD that contributes to the UPF2-mediated regulation of
149 30%) of PTC-containing mRNAs expressed from NMD-competent PTC-containing constructs were as stable a
150 wever, the production of EJC footprints from NMD but not microRNA targets requires the NMD factor SUP
151 ion of trace amounts of mutant proteins from NMD-competent PTC-containing constructs was not affected
153 role of RNA helicases in the transition from NMD complexes that recognize a PTC to those that promote
155 ge, sex, race, and dialysis status), greater NMD associated with greater 6-week AVF blood flow rate a
157 conditionally lacking UPF3A exhibit "hyper" NMD and display defects in embryogenesis and gametogenes
158 high-throughput transcriptomics we identify NMD targets transcriptome-wide in PEL cells and identify
159 he forebrain (Upf2 fb-KO mice) show impaired NMD, memory deficits, abnormal long-term potentiation (L
161 how different mutation and most importantly NMD burdens influence cytolytic activity using machine l
162 of polypyrimidine tract binding protein 1 in NMD evasion enables enhanced prediction of transcript su
166 AVF diameter (per absolute 10% difference in NMD: change in blood flow rate =14.0%; 95% confidence in
167 Interestingly, these exons are enriched in NMD signals, and, accordingly, ZMAT3 broadly affects tar
169 significant overlap of upregulated genes in NMD-defective cells with those in the brain tissues, mic
170 n the NMD pathway, with a global increase in NMD efficiency in patients with NMD co-alterations.
174 rich C9orf72 dipeptide repeats could inhibit NMD activities by reducing the abundance of processing b
176 short and long 3'UTR isoforms by inhibiting NMD, in addition to its previously described modulation
177 ting and tumor evolution, and how inhibiting NMD may be an effective strategy to increase the efficac
178 unteract this, flavivirus infection inhibits NMD and the capsid-PYM1 interaction interferes with EJC
180 Our data suggest that TAV can intercept NMD by targeting the decapping machinery through the sca
183 rks genetic screen identifies multiple known NMD factors and numerous human candidate genes, providin
184 confirming that a cytoplasmic mechanism like NMD indeed cannot be responsible for the observed reduct
186 linical heterogeneity that exists among many NMDs and by limited knowledge about disease-specific car
189 urther show that hundreds of human and mouse NMD targets, especially RNA-binding proteins, encode pot
194 s as genuine, preserving both the ability of NMD to accurately detect aberrant mRNAs and the capacity
196 veloped a method of in vivo amplification of NMD reporter fluorescence (Fireworks) that enables CRISP
201 factors, efficient and accurate detection of NMD substrates involves proteins that safeguard normal m
202 ocess owing to expansion of the diversity of NMD-regulated transcripts, particularly during various d
203 involvement, highlighting unique features of NMD-associated myocardial disease that require clinician
206 esence of unique features - key hallmarks of NMD targets in the p53beta transcript, which was further
208 for a large RBP panel, shRNA inactivation of NMD pathway, and shRNA-depletion of RBPs followed by RNA
214 sed, most notably, rpl10a When the levels of NMD-susceptible rpl10a transcripts were artificially inc
216 d RAD57 Finally, we demonstrate that loss of NMD results in an increase in recombination rates and re
218 Here, we will focus on the mechanism of NMD with an emphasis on the role of RNA helicases in the
220 Here, we report a gene-specific method of NMD inhibition using antisense oligonucleotides (ASOs) a
223 the importance of known and novel 'rules of NMD' to be tested and combined into methods that accurat
225 , we derived novel patient-level metrics of 'NMD burden' and interrogated how different mutation and
228 required to best inform future guidelines on NMD-specific cardiovascular health risks, treatments, an
229 found different impacts of these proteins on NMD and the Arabidopsis transcriptome, with UPF1 having
232 human nonsense-mediated mRNA decay pathway (NMD) performs quality control and regulatory functions w
233 overed that UPF3A acts primarily as a potent NMD inhibitor that stabilizes hundreds of transcripts.
234 ns control kinetic proofreading of potential NMD substrates, presenting a new model for RNA helicase
235 Here we develop an algorithm to predict NMD and apply it on somatic mutations reported in The Ca
237 el p38alpha-dependent pathway that regulates NMD activity in response to persistent DNA damage, which
238 show that DHX34, an RNA helicase regulating NMD initiation, directly interacts with RUVBL1-RUVBL2 in
240 and xrn4 accumulates 3' fragments of select NMD targets, despite the lack of the metazoan endoribonu
241 statement, we provide background on several NMDs in which there is cardiac involvement, highlighting
245 radome and provide a new avenue for studying NMD and other mechanisms targeting EJC-bound mRNAs for d
247 lytic gene expression, and demonstrates that NMD can function as a cell intrinsic restriction mechani
249 ipulating splicing components, we found that NMD activities are crucial to control p53beta levels und
250 ate specific DNA repair proteins and/or that NMD inactivation may lead to aberrant mRNAs leading to s
257 ntified a functional interaction between the NMD machinery and terminating ribosomes based on 3' RNA
258 F3B is involved in the crosstalk between the NMD machinery and the PTC-bound ribosome, a central mech
263 ably, expression of UPF1, a core gene in the NMD pathway, efficiently blocked neurotoxicity caused by
264 ed significant co-alteration of genes in the NMD pathway, with a global increase in NMD efficiency in
272 our results suggested that activation of the NMD pathway could be a potential therapeutic strategy fo
274 oducts could lead to the accumulation of the NMD substrates and identified arginine-rich dipeptide re
276 ted in vitro translation system to probe the NMD proteins for interaction with the termination appara
277 indicating that genetically reactivating the NMD pathway could suppress dipeptide repeat toxicity.
278 om NMD but not microRNA targets requires the NMD factor SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENIT
284 re-mRNAs, their exons respond prominently to NMD pathway disruption, and that the responding exons ar
286 the susceptibility of a given transcript to NMD can be modulated by its 3'UTR length and ability to
289 , we found that FRY2/CPL1 interacts with two NMD factors, eIF4AIII and UPF3, and is involved in the d
295 , the available data suggest that vertebrate NMD is a complex, branched pathway wherein individual br
298 stomach adenocarcinomas are associated with NMD-elicit mutations of the translation initiators LARP4