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1 PIR also maintains NREF, a non-redundant reference datab
2 PIR can strongly influence the timing of spikes on rebou
3 PIR clones could form DNA-damage-induced RAD51 nuclear f
4 PIR cross-linkers are designed to contain chemical bonds
5 PIR maintains the Protein Sequence Database (PSD), an an
6 PIR technology enabled our team to precisely describe th
7 PIR-1 also regulates the CSR-1 22G-RNA pathway and has c
8 PIR-A and PIR-B are activating and inhibitory Ig-like re
9 PIR-A and PIR-B, paired immunoglobulin-like receptors en
10 PIR-ALN includes 529 alignments that can be used to deve
11 PIR-ALN is currently being distributed as a single ASCII
12 PIR-B coligation with the IgE receptor (FcepsilonRI) inh
13 PIR-B contains four ITIM motifs and is thought to be an
14 PIR-B negatively regulates macrophage functions in respo
15 PIR-B(-/-) BMMphi also produced more nitrite and TNF-alp
16 PIR-B(-/-) bone marrow-derived macrophages (BMMphi) fail
17 PIR-B(-/-) mice have more inflammatory cells in the live
18 PIR-B(-/-) mice were found to be more susceptible to Sal
19 PIR-B-deficient bone marrow eosinophils underwent compar
20 PIR-LAESI offers a 20-30 mum vertical resolution ( appro
21 PIR-LAESI was further used to image the distribution ins
22 PIR-LAESI was used to map the distribution of endogenous
23 PIR-NREF provides a timely and comprehensive collection
24 MBL proteins organized with more than 36 000 PIR superfamilies, 145 000 families, 4000 domains, 1300
27 e structure of the extracellular domain of a PIR from Plasmodium chabaudi We use structure-guided seq
28 significantly less likely than those with a PIR of at least 5 to report visiting an eye care provide
29 10.4 is shown to recognize an allelic PIR-A/PIR-B determinant on cells from BALB/c but not C57BL/6 m
31 eling to show that this fold is found across PIR proteins from mouse- and human-infective malaria par
32 e receptors (PIRs) that serve as activating (PIR-A) and inhibitory (PIR-B) receptors on B lymphocytes
34 the paired Ig-like receptors of activating (PIR-A) and inhibitory (PIR-B) types for modifying an IgE
35 rine paired Ig-like receptors of activating (PIR-A) and inhibitory (PIR-B) types, we isolated PIR hom
36 tibody 10.4 is shown to recognize an allelic PIR-A/PIR-B determinant on cells from BALB/c but not C57
38 000 person-years were 1052 (547, 2022) among PIR versus 261 (166, 409) among immune responders; rate
41 phages, two inhibitory receptors, SHPS-1 and PIR-B, are the major proteins binding to the tyrosine ph
43 ngs suggest that the disruption of PIR-A and PIR-B balance affects their regulatory roles in host def
44 determine the functional roles of PIR-A and PIR-B in primary bacterial infection, PIR-B-deficient (P
45 PIR allotype are expressed whereas PIR-A and PIR-B molecules bearing the maternal allotype are not.
46 elic expression of the polymorphic PIR-A and PIR-B molecules, and possibly of their human Ig-like tra
48 Although mast cells produced both PIR-A and PIR-B, PIR-B was found to be preferentially expressed on
52 1 dephosphorylates specific sites on BIT and PIR-B while protecting other sites from dephosphorylatio
53 membrane potential, endogenous bursting, and PIR properties could be observed in the intact nervous s
55 itory receptors (ILT3 and ILT4 in humans and PIR-B in rodents) and low levels of costimulatory and ad
56 ess with conjugate excitation-inhibition and PIR provides a reinforcing and evolutionarily advantageo
57 omprehensive fragmentation of these PIRs and PIR-labeled cross-linked peptides with low-energy collis
58 ession of PIR-B, an inhibitory receptor, and PIR-A, an activating receptor; demonstrate the requireme
61 onal information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the
62 niProt Knowledgebase (Swiss-Prot, TrEMBL and PIR-PSD) using the standardized vocabulary of the Gene O
64 erived macrophages, masking of PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows significantly
68 tation-tagged literature corpus developed at PIR was used to evaluate the system for finding phosphor
69 ch as paired immunoglobulin-like receptor B (PIR-B) and their function regulating eosinophil accumula
70 eptor paired immunoglobulin-like receptor B (PIR-B) in the regulation of macrophage function in innat
71 on of paired immunoglobulin-like receptor B (PIR-B), also known as leukocyte immunoglobulin-like rece
72 ficient in paired immunoglobulin receptor B (PIR-B), an inhibitory receptor activated by SFKs, did no
73 gh mast cells produced both PIR-A and PIR-B, PIR-B was found to be preferentially expressed on the ce
74 tatistically significant association between PIR and BMI z score among preterm boys (betaPIR + beta P
75 deleting PIR-A in the recipient or blocking PIR-A binding to donor MHC-I molecules blocks memory and
76 cells were much more likely to display both PIR and autapse-induced firing than GAD2(+) cells, suppo
80 abase has been maintained collaboratively by PIR-International, an international association of data
87 rimary bacterial infection, PIR-B-deficient (PIR-B(-/-)) and wild-type (WT) control mice were injecte
93 e systematic detection of annotation errors, PIR has extended its superfamily concept and developed t
97 indicated that MDSCs genetically ablated for PIR-B (Lilrb3(-/-)) underwent a specific transition to M
98 earched expressed sequence tag databases for PIR relatives to identify chicken expressed sequence tag
100 nsight supports a likely shared function for PIR-1 in C. elegans Furthermore, we show that DUSP11 mod
102 paBbeta, contained information necessary for PIR degradation, thereby explaining IkappaBalpha selecti
103 bservations point to a nonredundant role for PIR-B in the regulation of leukocyte integrin signaling.
104 suggest a physiological inhibitory role for PIR-B that is regulated by endogenous MHC class I-like l
105 sts of about 800 000 proteins collected from PIR-PSD, SWISS-PROT, TrEMBL, GenPept, RefSeq and PDB, wi
106 nsisting of more than 1 000 000 entries from PIR-PSD, SWISS-PROT, TrEMBL, RefSeq, GenPept, and PDB.
107 any multiple sequence alignment source (e.g. PIR and CLUSTAL formats), and is valuable for revealing
111 actor, the conserved RNA-phosphatase homolog PIR-1, is required for the processing of a putative ampl
113 h greater national and global investments in PIR capacity will be required to enable the scaling of e
114 on: diffuse spreading along the sinusoids in PIR-B(-/-) mice vs nodular restricted localization in WT
116 -A and PIR-B in primary bacterial infection, PIR-B-deficient (PIR-B(-/-)) and wild-type (WT) control
117 urons were either presynaptically inhibited (PIR; 11%) or excited (PER; 8%) when extracellular glucos
118 eptors of activating (PIR-A) and inhibitory (PIR-B) isoforms are expressed by many hematopoietic cell
119 serve as activating (PIR-A) and inhibitory (PIR-B) receptors on B lymphocytes, dendritic cells, and
120 eptors of activating (PIR-A) and inhibitory (PIR-B) types for modifying an IgE antibody-mediated alle
121 eptors of activating (PIR-A) and inhibitory (PIR-B) types, we isolated PIR homologues from a rat sple
123 phosphorylated insulin receptor interacting (PIR) domain between the PH (pleckstrin homology) and SH2
124 85-kD molecules exclusively intracellularly; PIR-A and FcRgammac cotransfectants expressed the PIR-A/
125 PIRL ablation with electrospray ionization (PIR-LAESI) mass spectrometry is demonstrated and charact
127 l surface molecules of approximately 120 kD, PIR-A transfectants expressed the approximately 85-kD mo
128 way, an RNA silencing role for the mammalian PIR-1 homolog (dual specificity phosphatase 11 [DUSP11])
131 beta(2)-microglobulin (beta(2)M) molecules, PIR-B served as a permissive checkpoint for IL-5-induced
133 nsmembrane and cytoplasmic domains of murine PIR-A3 showed the ability of PIR-A3 to physically intera
135 s, our findings suggest that nonconventional PIR degradation of IkappaBalpha may play a physiological
136 otation databases: Swiss-Prot, TrEMBL, NREF, PIR, Gene Ontology, KEGG, Entrez Gene, GenBank, GenPept,
137 mains of murine PIR-A3 showed the ability of PIR-A3 to physically interact with the FcepsilonRIgamma
138 y suppressing the proapoptotic activities of PIR-A, which were mediated by the Grb2-Erk-Bim pathway.
140 phism data and search tools, the addition of PIR gene superfamily classifications, phenotype data for
142 PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows significantly impaired recognition of S. aur
145 In wild-type (wt) cells dephosphorylation of PIR-B was associated with maximal chemokine signaling, w
146 hese findings suggest that the disruption of PIR-A and PIR-B balance affects their regulatory roles i
148 e findings offer insights into the effect of PIR mutations on the evolution of BVM resistance in PI-e
151 define the coordinate cellular expression of PIR-B, an inhibitory receptor, and PIR-A, an activating
156 bone marrow-derived macrophages, masking of PIR-B by anti-PIR mAb or genetic deletion of PIR-B shows
159 ved constitutive tyrosine phosphorylation of PIR-B molecules on macrophages and B lymphocytes, irresp
160 Unexpectedly, tyrosine phosphorylation of PIR-B was not observed in most myeloid and B cell lines
163 data are the first to show the potential of PIR-A3 to deliver activation signals to macrophages and
165 riments were performed to define the role of PIR-B in the negative regulation of macrophage function
168 Surprisingly, we found that the strength of PIR increased slowly over multiple cycles of synaptic in
170 on network and demonstrate the usefulness of PIR technology for precision mapping of functional host-
171 he inhibitory effect of increased glucose on PIR neurons appears to be mediated by a presynaptic gamm
174 R amino acid sequences in a search for other PIR relatives led to the recognition of mammalian Fc rec
175 ates that PIR molecules bearing the paternal PIR allotype are expressed whereas PIR-A and PIR-B molec
176 otein family databases (Blocks + DOMO, Pfam, PIR-ALN, PRINTS, PROSITE, ProDom, PROTOMAP, SBASE, and S
177 he monoallelic expression of the polymorphic PIR-A and PIR-B molecules, and possibly of their human I
181 sessed by using the poverty to income ratio (PIR), were associated with changes in BMI z score among
182 ool) and lower income (poverty income ratio [PIR] <1.00 vs >/= 4.00) were consistently less likely to
183 verse inhibition and postinhibitory rebound (PIR) excitation of the pFRG and postinspiratory feedback
184 ng IPSCs accelerates postinhibitory rebound (PIR) in TC neurons, and that increasing either the ampli
186 rease in the size of postinhibitory rebound (PIR) occurred with 5-HT application in all three cell ty
188 Many neurons exhibit postinhibitory rebound (PIR), in which neurons display enhanced excitability fol
189 their effect through the inhibitory receptor PIR-B since neutrophils and DCs from pir-b-/- mice were
190 we identify murine-paired Ig-like receptor (PIR)-B, and its human orthologs Ig-like transcript 2 and
191 ma)RIIB, gp49B1 and paired Ig-like receptor (PIR)-B, have shown that the molecules indeed suppress al
195 urine equivalents, paired Ig-like receptors (PIR), contain two additional immunoglobulin domains, but
196 A-type paired immunoglobulin-like receptors (PIR-As) as the MHC-I receptors necessary for the memory
197 al antibodies produced against a recombinant PIR protein identified cell surface glycoproteins of app
198 consists of more than 200,000 non-redundant PIR and SWISS-PROT proteins organized with more than 28,
199 sion consists of about 830 000 non-redundant PIR-PSD, SWISS-PROT, and TrEMBL proteins organized with
201 in the LN peripheral interfollicular region (PIR), DCs generate more frequent and stable interactions
202 rallel linear (SAM) and isotonic regression (PIR) methods identified 95 and 53 probe sets as dose-res
204 tous are the Plasmodium-interspersed repeat (PIR) proteins, with more than 1,000 variants in some gen
205 ers, including protein interaction reporter (PIR) technologies, enables XL-MS studies on protein stru
207 us [PLRV]) and protein interaction reporter (PIR), a revolutionary technology that couples a mass spe
209 s gap is policy and implementation research (PIR) that aims to produce generalizable evidence on what
211 , we observed that a PR inhibitor-resistant (PIR) HIV-1 mutant is unable to efficiently cleave the gp
213 ss-references, Protein Information Resource (PIR) and SWISS-PROT protein sequence database feature ta
223 than proposed for Pre-Industrial Revolution (PIR) conditions has important ecological, biogeochemical
224 These results demonstrate that rhythmic PIR activity is an emergent property of interactions bet
225 ceptors which resemble the six domain rodent PIR as well as the four domain LILR found in other speci
228 d homodimer associated with the cell surface PIR molecules was identified as the Fc receptor common g
229 FcRgammac chain association for cell surface PIR-A expression; and suggest that the level of FcRgamma
234 This comparative study illustrates that PIR-LAESI is an ion source for ambient mass spectrometry
235 C57BL/6) F1 hybrid offspring indicates that PIR molecules bearing the paternal PIR allotype are expr
237 miniphosphoproteomic approach revealed that PIR-B recruits activating kinases after LTB(4) but not e
247 n expression could differentially affect the PIR-A/PIR-B equilibrium in different cell lineages.
249 e the amount of experimental annotation, the PIR has developed a bibliography system for literature s
253 sequence database in the public domain, the PIR-International Protein Sequence Database, in collabor
255 tation was mapped to At5g18410, encoding the PIR/SRA1/KLK subunit of the ArabidopsisSCAR/WAVE complex
257 es/macrophages, and mast cells expressed the PIR molecules in varying levels, but T cells and NK cell
261 n also be obtained by anonymous FTP from the PIR FTP site at NBRF.Georgetown.edu, directory [ANONYMOU
263 ons requiring standardized annotation in the PIR-International Protein Sequence Database was large an
264 nt interrelationships among sequences in the PIR-International Protein Sequence Database, to spread a
267 n and promote database interoperability, the PIR-International employs rule-based and classification-
269 ing inverted repeats (PIR2), a member of the PIR family of fungal cell wall glycoproteins that protec
270 Stomata of an independent allele of the PIR gene (Atpir-1) showed reduced sensitivity to darknes
271 s. the pFRG and resultant modulations of the PIR in various excited and depressed states, leading to
273 resistance was delayed in the context of the PIR PR, and the SP1-A1V mutation was acquired most frequ
274 hway to AME resistance in the context of the PIR PR, we selected for resistance with an HIV-1 isolate
276 e findings suggest that further study of the PIR-A receptors should be aggressively pursued toward a
278 ts define the preferential expression of the PIR-B molecules on mast cells and an inhibitory potentia
279 s, we investigated the effect of loss of the PIR-B protein on integrin-mediated signaling in primary
281 n Information Database (JIPID), produces the PIR-International Protein Sequence Database (PSD), the m
286 formationally destabilized compared with the PIR, whereas in the kinase-off state, the HAMP is more c
289 y, ANGPTL2 activates dendritic cells through PIR-B-NOTCH signaling and enhances tumor vaccine efficac
290 o the major protein (PDB, SWISS-PROT/TrEMBL, PIR-ALN, NCBI Taxonomy Browser) and literature (PubMed,
293 paternal PIR allotype are expressed whereas PIR-A and PIR-B molecules bearing the maternal allotype
295 or tyrosine-based inhibitory motifs, whereas PIR-A pairs with the Fc receptor common gamma chain to f
296 ay has been described, it is unknown whether PIR-A receptors can deliver activation signals to macrop
297 ines of evidence supporting a model in which PIR-B displays opposing but potent regulatory functions
299 ll rate of AIDS/death was low, children with PIR had a 4-fold increase in risk of event as compared w