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1 Pol I activity is commonly deregulated in human cancers.
2 Pol I elongation complexes are less stable than Pol II e
3 Pol I is protected by its subunit A12.2, which decreases
4 Pol I mutants lacking either the heterodimeric subunit R
5 Pol I occupancy of the coding region of the rDNA in THO
6 Pol I transcription in hpr1 or tho2 null mutants is dram
7 Pol I's mutational footprint suggests: (i) during leadin
12 th the eukaryotic RNAP subunits A43 and A14 (Pol I), Rpb7 and Rpb4 (Pol II), and C25 and C17 (Pol III
13 Binding of initiation factor Rrn3 activates Pol I, fostering recruitment to ribosomal DNA promoters.
19 l RNA synthesis rates, rDNA copy number, and Pol I occupancy of the rDNA demonstrate that Spt5p plays
21 f typical rDNA silencing, including RENT and Pol I dependence, as well as a requirement for the Preis
22 n, however, which involves the silencing and Pol I-mediated transcriptional switching of subtelomeric
24 nscription elongation complex stability, and Pol I pausing in vitro in response to downstream DNA.
26 it RNA polymerases I and III (abbreviated as Pol I and Pol III), the first analysis of their physical
28 uclear RNA polymerases (Pols) referred to as Pols I, II, and III, each of which synthesizes a specifi
32 centrations that provide information on both Pol I's nucleotide addition and nuclease activities.
34 taneous imaging of all active genes bound by Pol I and the architectural chromatin protein Upstream B
37 s transcription initiation and elongation by Pol I, identifying a new cellular target for the conserv
44 t AT-rich downstream DNA enhances pausing by Pol I and inhibits Pol I nucleolytic cleavage activity.
49 d on the initiation step of transcription by Pol I; however, recent studies in yeast and mammals have
51 majority of transcription in growing cells, Pol I regulation is poorly understood compared to Pol II
52 olve a structure of Saccharomyces cerevisiae Pol I-CF-DNA to 3.8 A resolution using single-particle c
53 differences between Saccharomyces cerevisiae Pols I and II using a series of quantitative in vitro tr
54 BP]G*), is processed in a well-characterized Pol I family model replicative DNA polymerase, Bacillus
55 hese results suggest that (i) the beta clamp-Pol I interaction may be important for proper Pol I func
56 for the 5'-3' exonuclease Rat1 that degrades Pol I-associated transcripts destabilizing the transcrip
57 O(6)-(benzotriazol-1-yl)inosine derivatives (Pol-I and Pol-dI) have been synthesized reasonably effec
58 43 and A14 in the regulation of differential Pol I complexes assembly and subsequent promoter associa
62 X1, the exonuclease domains from E. coli DNA-Pol I, and the DNA polymerase of bacteriophage RB69.
65 Pol I-specific subunit domains to efficient Pol I passage through nucleosomes in the context of tran
66 onstrate that protein levels of an essential Pol I initiation factor, Rrn3, are reduced when Spt6 is
67 ved that Spt5 directly binds to an essential Pol I transcription initiation factor, Rrn3, and to the
68 nes, POLR1C and POLR1D, encode for essential Pol I/III subunits that form a heterodimer necessary for
69 nderscoring the parallels between eukaryotic Pol I, II, and III and archaeal transcription machinerie
72 architectural chromatin protein facilitating Pol I-mediated transcription of both protein coding gene
74 transcription factors have been defined for Pol I in mammals, the selectivity factor SL1, and the up
75 pt6-1004, we show that Spt6 is essential for Pol I occupancy of the ribosomal DNA (rDNA) and rRNA syn
79 o studies revealed a 'torpedo' mechanism for Pol I termination: co-transcriptional RNA cleavage by Rn
80 bunits that form a heterodimer necessary for Pol I/III assembly, and many TCS mutations lie along the
86 We report that TAF1B, a subunit of human Pol I basal transcription factor SL1, is structurally re
89 transcriptional control by RNA polymerase I (Pol I) and associated factors is well studied, the linea
92 ranscription initiation by RNA Polymerase I (Pol I) depends on the Core Factor (CF) complex to recogn
93 n properties of eukaryotic RNA polymerase I (Pol I) from Saccharomyces cerevisiae has not been define
99 , transcription of rRNA by RNA polymerase I (Pol I) is an important target for the regulation of this
100 NA (rRNA) transcription by RNA polymerase I (Pol I) is the first key step of ribosome biogenesis.
101 , we identify a Drosophila RNA polymerase I (Pol I) regulatory complex composed of Under-developed (U
102 s transcribed from rDNA by RNA polymerase I (Pol I) to produce the 45S precursor of the 28S, 5.8S, an
104 Unusually, T. brucei uses RNA polymerase I (Pol I) to transcribe the active ES, which is unprecedent
105 1C and POLR1D) involved in RNA polymerase I (Pol I) transcription account for more than 90% of diseas
108 n that associates with the RNA polymerase I (Pol I) transcription machinery to suppress rRNA gene tra
109 inability to fully reactivate polymerase I (Pol I) transcription when cells exit stationary phase.
110 the selective inhibitor of RNA polymerase I (Pol I) transcription, CX-5461, effectively treats aggres
112 that synthesizes the rRNA, RNA polymerase I (Pol I), and by interactions with cofactors that influenc
113 through interactions with RNA polymerase I (Pol I), and to a pair of DNA replication fork block site
114 that family, Escherichia coli polymerase I (Pol I), may also be able to bypass these large major gro
115 ranscription, catalyzed by RNA polymerase I (Pol I), plays a critical role in ribosome biogenesis, an
116 rated the critical role of RNA polymerase I (Pol I)-associated factor PAF53 in mammalian rRNA transcr
118 to function exclusively in RNA polymerase I (Pol I)-specific transcription of the ribosomal genes.
119 ess, TbISWI down-regulates RNA polymerase I (Pol I)-transcribed variant surface glycoprotein (VSG) ge
128 dels suggest that RNA polymerases I and III (Pol I and Pol III) are the only enzymes that directly me
131 role in ribosome biogenesis, and changes in Pol I transcription rate are associated with profound al
132 s processing of nascent rRNA, and changes in Pol I transcription rate result in alternative rRNA proc
134 bly and postpolymerase recruitment events in Pol I transcription, underscoring the parallels between
135 xpectedly, UBTF2, which does not function in Pol I transcription, is sufficient to regulate histone g
137 showed a small but reproducible increase in Pol I density in a region near the 5' end of the gene.
139 Consistent with a direct role for Mot1 in Pol I transcription, Mot1 also associates with the Pol I
140 ter cassette (mURA3) such that reductions in Pol I transcription induce growth on synthetic media lac
141 nclude that SWI/SNF plays a positive role in Pol I transcription, potentially by modifying chromatin
143 for SL1, including the TAF(I)41 subunit, in Pol I recruitment and, therefore, preinitiation complex
147 these downstream sequence elements influence Pol I in vivo Native elongating transcript sequencing st
148 budding yeast, like most eukaryotes, inhibit Pol I transcription before segregation as a prerequisite
149 mplexes in the nucleolus, thereby inhibiting Pol I transcription and inducing apoptosis in cancer cel
152 t AC40 paralogs, one of which assembles into Pol I and the other of which assembles into Pol III.
157 ctron cryomicroscopy structures of monomeric Pol I alone and in complex with Rrn3, underscores the ce
159 ption assays to study purified WT and mutant Pol I variants from the yeast Saccharomyces cerevisiae a
160 zation of either Rrn7 N-terminal domain near Pol I wall or the tandem winged helix domain of A49 at a
161 with RNA polymerase II (Pol II), but neither Pol I- nor Pol III-transcribed regions in the budding ye
162 posure of the polymer-supported nucleosides, Pol-I and Pol-dI, to alcohol, phenol, thiol and amine nu
164 function in vivo and (ii) in the absence of Pol I, ssDNA gaps may persist in the dnaN159 strain, lea
169 DHX33 knockdown decreased the association of Pol I with rDNA and caused a dramatic decrease in levels
171 nd ChIP experiments show that association of Pol I with the rRNA gene is reduced in RPS19-depleted ce
172 deprivation, cells induce rapid clearance of Pol I-Rrn3 complexes, followed by the assembly of inacti
174 date, the factors involved in the control of Pol I transcription elongation are poorly understood.
175 unction is required for efficient control of Pol I transcription in response to target of rapamycin (
180 e degraded by proteasomes upon inhibition of Pol I activity by actinomycin D, L5 and L11 accumulate i
181 ent apoptotic cell death), the inhibition of Pol I transcription also demonstrates potent efficacy in
182 Most strikingly, the acute inhibition of Pol I transcription reduces both the leukemic granulocyt
183 xamides have been evaluated as inhibitors of Pol I and activators of the destruction of RPA194, the P
186 ur findings indicate that elevated levels of Pol I partially suppress the temperature-sensitive growt
187 s from these cells support reduced levels of Pol I transcription; addition of SL1 to the extracts rai
190 A promoter in vivo, with concomitant loss of Pol I from the rDNA and reduced synthesis of the pre-rRN
196 he beta clamp stimulates the processivity of Pol I in vitro and that beta159 is impaired for this act
197 A194, the large catalytic subunit protein of Pol I holocomplex, and this correlates with cancer cell
200 phosphorylation of three known regulators of Pol I, CDK2, AKT and AMPK, is altered during ribosomal s
201 eukaryotic cells, including the silencing of Pol I and Pol II transcribed genes, silencing of replica
203 fy distinct backtrack recovery strategies of Pol I and Pol II, shedding light on the evolution of cel
204 Cryo-electron microscopy (EM) structures of Pol I initiation and elongation complexes have given fir
205 coilin with RPA-194 (the largest subunit of Pol I), and we further show that coilin can specifically
207 vivo is fundamentally different from that of Pol I and whether the static behavior of Pol II factors
208 icine, are potent and specific inhibitors of Pol-I transcription, with IC(50) in vitro and in cells i
211 of UBF, Ser388 phosphorylated UBF, and other Pol I-related components (POLR1E, TAF1A, and TAF1C) rema
212 (rDNA) promoter and interacts with two other Pol I initiation factors, the TATA-binding protein (TBP)
213 ntroduce a new nomenclature system for plant Pol I and Pol III subunits in which the 12 subunits that
214 anscriptional status of both RNA polymerase (Pol) I and II to control multiple steps of ribosome biog
215 pt5 directly associates with RNA polymerase (Pol) I and RNA Pol II in yeast through its central regio
216 ture of the 14-subunit yeast RNA polymerase (Pol) I enzyme at 12 A resolution using cryo-electron mic
220 ynthesis of ribosomal RNA by RNA polymerase (Pol) I; however, previous studies only characterized def
221 e first time that the major DNA polymerases (Pol I and Pol III) and DNA ligase are directly involved
222 anslational modification of RNA polymerases (Pol) I and II by acetylation mediates the transcriptiona
225 her, these data indicate that Paf1C promotes Pol I transcription through the rDNA by increasing the n
226 ol I interaction may be important for proper Pol I function in vivo and (ii) in the absence of Pol I,
228 -kinase) and two other family members [PTRF (Pol I and transcription release factor) and SDPR] functi
230 n from nuclear extracts dramatically reduces Pol I transcription; addition of SL1 restores the abilit
231 products of proto-oncogenes can up-regulate Pol I, whereas tumor suppressor proteins can inhibit rRN
233 our data suggest that coilin acts to repress Pol I activity in response to cisplatin-induced DNA dama
235 tionally, the nucleolus disassembled and RNA Pol I activity declined after RNA Pol II inhibition.
236 cription, but overlap in function during RNA Pol I-mediated gene expression during host immune evasio
239 2-subunit phosphorylated and inactivated RNA Pol I (polymerase I)-associated transcription factor TIF
241 nal arrest as evidenced by inactivity of RNA Pol I and II and the subsequent alteration in nuclear su
242 is accompanied by prolonged retention of RNA Pol I components at the promoter, resulting in longer pr
244 n between expression, hypomethylation of RNA Pol I promoters and chromatin decondensation was apparen
245 edly with the highly dynamic behavior of RNA Pol I transcription complexes in vivo, which undergo cyc
246 tion factor and that T. brucei relies on RNA Pol I for expressing the variant surface glycoprotein (V
247 and DNA damage accumulation in telomeric RNA Pol I transcription sites, also leading to altered gene
248 ur biochemical analyses demonstrate that RNA Pol I can transcribe through nucleosome templates and th
249 ith open chromatin, co-localize with the RNA Pol I transcription factor UBF1, and undergo transition
250 (rDNA) loci, where it interacts with the RNA Pol I transcription factor upstream binding factor (UBF)
251 Runx2 forms complexes containing the RNA Pol I transcription factors UBF1 and SL1, co-occupies th
253 te that despite its constrained active site, Pol I can catalyze DNA synthesis past N(6)-dA-linked pep
254 The reduced ability of beta159 to stimulate Pol I in vitro correlates with our finding that single-s
255 ead to deregulated signaling that stimulates Pol I transcription with resultant increases in ribosome
257 ng de novo DNA methylation fails to suppress Pol I or Pol II transcription in the absence of HDA6 act
259 ng transcript sequencing studies reveal that Pol I occupancy increases as downstream AT content incre
265 ere is a biochemical interaction between the Pol I-associated heterodimer and Rrn3 and that this inte
266 ht into the functional interplay between the Pol I-specific transcription-like factors A49-A34.5 and
270 with different conformational states of the Pol I cleft, in addition to the stabilization of either
271 enow and Klentaq, the large fragments of the Pol I DNA polymerases from Escherichia coli and Thermus
276 of endogenous coilin partially overrides the Pol I transcriptional arrest caused by cisplatin, while
277 at Spt6 is involved in either recruiting the Pol I-Rrn3 complex to the rDNA or stabilizing the preini
278 ition at each round of rDNA replication, the Pol I transcription machinery has to deal with nucleosom
282 transcription, Mot1 also associates with the Pol I promoter in vitro in a reaction that depends on co
286 However, hypoacetylated heterodimer binds to Pol I with greater affinity than acetylated heterodimer.
287 o date, AC40 and AC19 subunits are common to Pol I (a.k.a. Pol A) and Pol III (a.k.a. Pol C) and are
288 ic recruitment of CE to Pol II as opposed to Pol I and Pol III rests on the interaction between CE an
291 onship with histones on actively transcribed Pol I transcription units, providing insight into how Po
292 inating the expression of highly transcribed Pol I (UBTF1 activity) and Pol II genes (UBTF2 activity)
294 tin transcription, but it is unknown whether Pol I has an intrinsic capacity to transcribe through nu
295 emonstrate that DDX21 widely associates with Pol I- and Pol II-transcribed genes and with diverse spe
299 Here, we present cryo-EM structures of yeast Pol I elongation complexes (ECs) bound to the nucleotide
300 re we show that Rrn7, a subunit of the yeast Pol I core factor, and its human ortholog TAF1B are TFII