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1 RIP and esophageal manometry can objectively identify su
2 RIP enables a protein fragment of a transmembrane precur
3 RIP is conserved from bacteria to humans and governs man
4 RIP limits radiation dosage, interrupts treatment, and l
5 RIP measures work of breathing (WOB) indices including p
6 RIP mediated by site-1 protease (S1P) and site-2 proteas
7 RIP mutations are, however, relatively rare in coding se
8 RIP-B7.1 mice homozygous for targeted disruption of TLR9
9 RIP-B7.1 transgenic mice express B7.1 costimulatory mole
10 RIP-LCMV islets express CXCL10 after isolation and maint
11 RIP-qPCR confirmed TTP binding to both sites, with a hig
12 RIP-seq and eCLIP analysis characterised the SND1 bindin
13 RIP-seq revealed that these proteins are bound primarily
15 underwent deletions rendering either type 1 RIPs (like those from Cucurbitaceae, Rosaceae and Iridac
16 related with the actual Euphorbiaceae type 1 RIPs fused with a double beta trefoil lectin gene simila
17 nces revealed that the most primitive type 1 RIPs were similar to that of the actual monocots (Poacea
20 hich nucleates RAD-51-ssDNA filaments, RFS-1/RIP-1 binds and remodels pre-synaptic filaments to a sta
21 stopped-flow experiments, we show that RFS-1/RIP-1 confers this dramatic stabilization by capping the
23 a heterodimeric Rad51 paralog complex, RFS-1/RIP-1, and uncovered the molecular basis by which Rad51
24 RAD51 paralog complex from C. elegans, RFS-1/RIP-1, functions predominantly downstream of filament as
26 Cucurbitaceae lectins to generate the type 2 RIPs and finally this gene underwent deletions rendering
30 sisting of single-chain proteins, and type 2 RIPs, consisting of an A chain with RIP properties coval
31 ngle antigen-mismatched mouse model (C57BL/6 RIP-GP in C57BL/6) was used to evaluate the antigen-spec
33 ctly activates programmed necrosis through a RIP homotypic interaction motif-dependent association of
34 Additionally, pharmacologic treatment with a RIP kinase inhibitor attenuated histological and functio
43 owed by high-throughput RNA sequencing (Ago2-RIP-seq) to capture functionally active microRNAs (miRNA
44 een SSEA3/SSEA4/Globo-H and the FAK/CAV1/AKT/RIP complex in tumor progression and apoptosis and sugge
45 ecipitation followed by microarray analysis (RIP-chip) to recover and identify the endogenous RNA tar
47 inking with immunoprecipitation- (CLIP-) and RIP-seq] for probing their activities have advanced rapi
49 erage and vessel perfusion both in mPDAC and RIP-Tag2 tumors, in parallel to an inhibition of tumor h
50 approach involving expression profiling and RIP-Chip analysis, we have identified a cohort of transl
51 pitation)-seq datasets for 60 human RBPs and RIP-ChIP (RNP immunoprecipitation-microarray) data for 6
52 and RNA modification sites from CLIP-seq and RIP-seq data, and reveals the significant contribution o
53 hed fractions were digested with trypsin and RIP-II peptides were identified based on accurate mass L
54 onstrate that, using a single protocol, APEX-RIP can isolate RNAs from a variety of subcellular compa
56 Here, we develop such a method, termed APEX-RIP, which combines peroxidase-catalyzed, spatially rest
57 queries, bioinformatic analyses, as well as RIP and RNA pull-down assays, we discovered and validate
59 ely rare in coding sequence, in part because RIP preferentially attacks GC-poor long duplicates that
61 plex virus 1 (HSV1) UL39-encoded ICP6 blocks RIP homotypic interacting motif (RHIM) signal transducti
62 st responsive mRNA target candidates in both RIP competition assays and expression profiling experime
63 focusing on CREB3L1 activation through both RIP and RAT, and discuss current open questions about th
65 by inspiratory flow limitation (measured by RIP and esophageal manometry) and classified as subglott
66 as Howardula rRNA in vitro at the canonical RIP target site within the alpha-sarcin/ricin loop (SRL)
68 eral high-throughput technologies (PAR-CLIP, RIP-chip, 4sU-tagging, and SILAC) provides strong eviden
73 ing the formation of 2 cell death complexes, RIP 1 (receptor-interacting protein 1)-FADD (Fas-associa
75 slets from either normal or CXCL10-deficient RIP-LCMV mice and transferred them under the kidney caps
84 complex that provides sequential, efficient RIP processing of full-length substrates to final produc
86 tein/multiple organellar RNA editing factor (RIP/MORF) boxes, which are required for ORRM1 to interac
87 erties render a given substrate amenable for RIP, and how the lipid environment affects the substrate
88 nto lead identification and optimization for RIP antidote development to minimize the global health t
89 that the mechanism of repeat recognition for RIP involves direct interactions between homologous doub
90 ver, the detailed mechanisms responsible for RIP of the transcription factors, including the precise
93 icantly up-regulated in isolated islets from RIP.B7-H4 compared with wild-type B6 mice (56%+/-23% vs.
95 e, selective activation of arcuate GABAergic RIP-Cre neurons, which monosynaptically innervate PVH ne
97 d cells, xenograft, and spontaneous genetic (RIP-Tag2) mouse models of PanNETs revealed that UPR sign
99 TRIF, the four mammalian proteins harboring RIP homotypic interaction motif (RHIM) domains, are key
101 using ribonucleoprotein immunoprecipitation (RIP) analysis, we discovered a novel function for MYF5 a
105 Here, we utilized RNA immunoprecipitation (RIP) combined with competitive binding assays to identif
107 iferase experiment, RNA immunoprecipitation (RIP), and mRNA stability analysis, we evaluated the pote
108 tion into myotubes, RNP immunoprecipitation (RIP) analysis indicated that AUF1 binds prominently to M
109 quencing data from RNA immunoprecipitations (RIPs) and report that mRNAs associated with the cell cyc
111 fferentiation by inducing 2-fold increase in RIP(+) cells (p<0.01) while the presence of miRs further
112 ndicate that inhibition of VEGF signaling in RIP-Tag2 mice upregulates c-Met expression in lymphatic
114 or near pancreatic neuroendocrine tumors in RIP-Tag2 transgenic mice and whether lymph node metastas
116 findings outline a mechanism of IFN-induced RIP kinase-dependent necrotic cell death and identify FA
119 OPNs) within the nucleus raphe interpositus (RIP) help gate the transition between fixation and sacca
120 ns labeled retrogradely from injections into RIP had numerous anterogradely labeled terminals closely
122 ipitation (IP)-based methods such as RNA IP (RIP) and crosslinking and IP (CLIP) are key starting poi
123 nt to suppress TNF-induced necrosis, and its RIP homotypic interaction motif (RHIM) domain was requir
126 nd receptor-interacting protein (RIP) kinase RIP 3 (RIPK3) driving extrinsic apoptosis and necroptosi
127 interacting serine/threonine-protein kinase (RIP) 1/3 were observed in the cells transfected with the
129 Because receptor-interacting protein kinase (RIP) 3-mediated necroptosis, a nonapoptotic cell death p
131 interacting serine/threonine-protein kinase (RIP)-3-mediated intestinal necroptosis was linked to inc
132 tion of receptor-interacting protein kinase (RIP)1 by necrostatin 1 partially inhibited TNF-alpha/ZVA
133 ated by receptor interacting protein kinase (RIP)3 (also called RIPK3) has emerged as an alternate de
136 kinase (RIP) 3 (also called RIPK3) mediates RIP homotypic interaction motif (RHIM)-dependent program
138 immunoprecipitation followed by microarray (RIP-chip) analysis showed that DHTS treatment of HeLa ce
139 rosynteny analyses, indicating that mosquito RIP genes derived from a single Horizontal Gene Transfer
140 affinity-purified Puf3-TAP associated mRNAs (RIP-seq) identified mRNAs encoding mitochondrially-targe
141 ospora crassa repeat-induced point mutation (RIP) as a model system, we show that a pair of DNA segme
143 nisms, namely repeat-induced point mutation (RIP), DNA methylation and small RNA-mediated gene silenc
145 Collectively, our study identifies a novel RIP in an insect defensive symbiont and suggests an unde
146 he high rate is largely due to the action of RIP, the mutational burden appears to be RIP-associated
149 f the alpha-helical substrate in the case of RIP may be associated with a hinge motion triggered by t
150 In this study, we employ a combination of RIP-seq and short- and long-wave individual-nucleotide r
151 event apoptosis together with competitors of RIP homotypic interaction motif (RHIM)-dependent signal
152 nd induces apoptosis through dissociation of RIP from the complex to interact with the Fas death doma
155 ted for the first time in silico evidence of RIP encoding genes in metazoans, in two closely related
156 ines are likely not the dominant inducers of RIP kinase-driven embryonic lethality in FADD-deficient
158 -encoded RHIM competitor, viral inhibitor of RIP activation, sustains viability of human cells like i
160 tions appear not to be the direct product of RIP being mostly in non-duplicate sequence and predomina
161 pected cell death-independent requirement of RIP kinase activity in coordinating neuroinflammation, r
162 s work we have carried out a broad search of RIP sequence data banks from angiosperms in order to stu
164 ative method for more effective treatment of RIP and promises to improve quality of life of cancer pa
169 pitation followed by sequencing (CLIP-seq or RIP-seq) allows transcriptome-wide discovery of RNA regu
170 ein should be applicable to studies of other RIP events and amenable to developing in vitro assays fo
172 munoprecipitation and RNA sequencing (8-oxoG RIP-seq) to identify 343 RNA transcripts heavily enriche
173 the RPM-1.FSN-1 complex inhibitory peptide (RIP), yields similar phenotypes and enhancer effects to
174 ive site of JIP60 are conserved in 815 plant RIPs in the Pfam database that were identified by HUMMR
175 ated respiratory inductance plethysmography (RIP) and esophageal manometry to identify clinically sig
176 Respiratory inductance plethysmography (RIP) provides a noninvasive method of PFT requiring mini
178 nd that the nature of reactant ion positive (RIP) is dependent on the discharge/carrier gas compositi
181 3-dihydroquinazolin-4(1H)-one as a promising RIP inhibitor and for chemical characterization of drug
183 enic mouse model using rat insulin promoter (RIP)-driven Cre-loxP recombination system to specificall
186 ell-specific promoter (rat insulin promoter [RIP]) stimulates proliferation of both alpha and beta ce
188 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in th
189 sma encodes a ribosome-inactivating protein (RIP) related to Shiga-like toxins from enterohemorrhagic
193 LR9 results in receptor interacting protein (RIP) 3 kinase-dependent programmed necrosis that occurs
195 the RNA-editing factor interacting protein (RIP) family and Organelle RNA Recognition Motif-containi
196 psis RNA-editing factor interacting protein (RIP) family and ORRM1 (Organelle RNA Recognition Motif-c
197 the RNA-editing factor interacting protein (RIP) family in Arabidopsis have recently been shown to b
198 lated to RHIM [receptor-interacting protein (RIP) homotypic interaction motif], an amyloid motif regu
199 ) that contain receptor-interacting protein (RIP) homotypic interaction motifs (RHIM) play a key role
200 this involves receptor-interacting protein (RIP) kinase 1/3, this study aimed to establish the role
202 , we show that receptor-interacting protein (RIP) kinase mediates necrotic cone cell death in rd10 mi
203 caspase-8 and receptor-interacting protein (RIP) kinase RIP 3 (RIPK3) driving extrinsic apoptosis an
204 evidence for a receptor-interacting protein (RIP) kinase-caspase-8-dependent macrophage apoptotic dea
205 e execution of receptor-interacting protein (RIP) kinase-dependent necroptosis, is upregulated and ac
208 is known that receptor interacting protein (RIP) kinases, RIP1 and RIP3, are key effectors of TNF-in
209 assembles with receptor-interacting protein (RIP)-2 kinase in response to the presence of bacterial m
210 the necrosome, receptor-interacting protein (RIP)1 and RIP3, are highly expressed in PDA and are furt
211 ce precipitous receptor-interacting protein (RIP)1/RIP3 kinase-mediated necrosis when the adaptor pro
213 ctive SREBP transmembrane precursor protein, RIP of the anchor intermediate by site-2 protease genera
217 nd ricin are ribosome-inactivating proteins (RIPs) that are lethal to mammals and pose a global healt
219 cess of regulated intramembrane proteolysis (RIP) and has a significant impact on receptor function.
220 eins by regulated intramembrane proteolysis (RIP) and regulated alternative translocation (RAT).
222 dergoes regulated intramembrane proteolysis (RIP) during late stationary phase in response to nutrien
223 cently, regulated intramembrane proteolysis (RIP) has been recognized as a mechanism whereby proteoly
225 ning in regulated intramembrane proteolysis (RIP) of OASIS, ATF6 and SREBP transcription factors, con
228 through regulated intramembrane proteolysis (RIP), to increase intracellular cholesterol and facilita
232 ive RIPs evolved to the dicot type 1 related RIPs (like those from Caryophyllales, Lamiales and Eupho
235 pplied it to a wide range of public CLIP-seq/RIP-seq datasets involving numerous splicing factors, mi
237 oprotein immunoprecipitation and sequencing (RIP-seq) analyses of HuR in oral cancer cells treated wi
238 immunoprecipitation followed by sequencing (RIP-seq), RNA sequencing (RNA-seq), and gene expression
239 how by RNA coimmunoprecipitation sequencing (RIP-seq) that artificial PPR proteins designed to bind t
240 oprecipitation coupled with deep sequencing (RIP-seq) revealed that CDK12 regulates release of 4E-BP1
241 noprecipitation followed by deep sequencing (RIP-seq) reveals that cytoplasmic CBFB binds to hundreds
242 oprecipitation coupled with deep sequencing (RIP-Seq); and that PUMPKIN can bind RNA efficiently in v
243 tion followed by next-generation sequencing (RIP-seq), and the diversity of RNA species identified su
244 e, using RNA immunoprecipitation-sequencing (RIP-seq), we identified the Polycomb-group histone methy
245 itation coupled with genome-wide sequencing (RIP-Seq) analysis revealed significant LIN28 binding wit
246 ratio is lower in islets from islet-specific RIP-iPLA2beta transgenic mice, whereas islets from globa
248 First, we show that recombinant Spiroplasma RIP catalyzes depurination of 28S rRNAs in a cell-free a
249 ay analysis of the RISC-bound miRNA targets (RIP-Chip) to evaluate the relative enrichment or depleti
250 is cell death pathway requires an N-terminal RIP homotypic interaction motif (RHIM) within R1, acting
257 n of the genome and methylome suggested that RIP and DNA methylation combinatorially maintain G. sine
260 t assays (RNA-EMSA) were used to confirm the RIP results and demonstrate that the TZF domain of AtC3H
261 onstructs encoding a region encompassing the RIP-RIP domain or a region spanning the RRM domain of OR
263 imply that the induction of diabetes in the RIP-B7.1 model is critically dependent on TLR3 and MyD88
265 decline in functional beta cell mass in the RIP-DTR mouse, a model of hyperglycemia resulting from d
270 Second, light inhibits pumping through the RIP-I1-MC neuron polysynaptic circuit, in which an inhib
271 x manifested this function by binding to the RIP homotypic interaction motif (RHIM) domains of TRIF a
272 contain a motif with some resemblance to the RIP Homotypic Interaction Motif (RHIM), a domain found i
274 opmental Cell, Michael et al. (2019) use the RIP-Tag mouse model to show that pro-apoptotic signals m
275 ies perinatal lethality in mice in which the RIP homotypic interaction motif domain of RIPK1 has been
276 courage its incorporation, together with the RIP competition assay, into existing target prediction a
279 ation in Irbp(-/-) mice, implicating the TNF-RIP pathway as a potential therapeutic target to prevent
281 r transcription factors and are subjected to RIP by site-1 protease (S1P) and site-2 protease (S2P) s
282 Type 2 ribosome-inactivating protein toxins (RIP-II toxins) were enriched and purified prior to enzym
286 sis, but little is known about how these two RIP kinases mediate this process, although reactive oxyg
287 factor-88 (MyD88), and most of the wild-type RIP-B7.1 mice housed under normal conditions remained di
289 ndent recognition of homology that underlies RIP and, potentially, other processes where sequence-spe
290 efensive symbiont and suggests an underlying RIP-dependent mechanism in Spiroplasma-mediated defense.
293 oimmune destruction of islet isografts using RIP-LCMV mice expressing a lymphocytic choriomeningitis
295 into the structural changes that occur when RIP kinases are triggered to execute different signaling
297 d type 2 RIPs, consisting of an A chain with RIP properties covalently linked to a B chain with lecti
298 signal of rRNA depurination consistent with RIP-dependent modification and large decreases in the pr
300 in the pancreatic beta-cells (arf-bp1(FL/Y)/RIP-cre) were viable and displayed no obvious abnormalit