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1 fic transcripts for oligonucleotide-mediated RNA editing).
2 pentatricopeptide repeat (PPR) proteins for RNA editing.
3 odified through cytidine to uridine (C-to-U) RNA editing.
4 r both in meiotic and post-meiotic germ cell RNA editing.
5 sttranscriptionally converted to uridines by RNA editing.
6 n specificity factors of cytidine to uridine RNA editing.
7 can affect cis-regulatory elements to alter RNA editing.
8 dge gaps about the variation and function of RNA editing.
9 within the RNA duplex structure required for RNA editing.
10 y shown to have sexual stage-specific A-to-I RNA editing.
11 p codon mutation by APOBEC3A-mediated C-to-U RNA editing.
12 he functions and regulation of ADAR-mediated RNA editing.
13 ains of ADAR3 are required for repression of RNA editing.
14 p ADAR inhibitors and new tools for directed RNA editing.
15 l properties, but also by their influence on RNA editing.
16 endent manner by a programmed process called RNA editing.
17 ulate alternative RNA splicing and/or A-to-I RNA editing.
18 with molecular functions unrelated to A-to-I RNA editing.
19 ive, similar to known negative regulators of RNA editing.
20 ndividual RNAs in RNA-seq data by exploiting RNA editing.
21 nosine conversion in dsRNA, a common form of RNA editing.
22 eta-binomial models to identify differential RNA editing.
23 SLO-2) depends on adr-1, a gene important to RNA editing.
24 nd unveils the cell type-specific effects of RNA editing.
28 f engineering improved variants with reduced RNA editing activities, and suggest the need to more ful
29 scovered to be highly associated with C-to-U RNA editing activity and other editing factors indicativ
32 CF/RBM47 expression, we have compared direct RNA editing activity on several known cellular target RN
33 SECURE-ABE variants with reduced off-target RNA-editing activity and comparable on-target DNA-editin
35 ucleotide analogs stimulated PPR65-catalyzed RNA-editing activity on PpccmFC substrates, indicating p
38 detailed insights for further elucidation of RNA editing affecting miRNAs, especially in cancer.In th
39 ovel bioinformatic platform, the Trypanosome RNA Editing Alignment Tool (TREAT), to elucidate the rol
40 thermore, we observed convergent patterns of RNA-editing alterations in ASD and Fragile X syndrome, e
41 haliana leaves resulted in defects in C-to-U RNA editing, altered accumulation of chloroplast transcr
42 ur study reveals widespread cis variation in RNA editing among genetically distinct individuals and s
45 hyl-4-isoxazole-propionate (AMPA) receptors, RNA editing and alternative splicing generate sequence v
46 h by catalyzing adenosine (A) to inosine (I) RNA editing and binding to regulatory elements in target
47 ase for a mechanistic linkage between A-to-I RNA editing and brain pathologies should be revisited.
49 ion could be repressed by ADARs beyond their RNA editing and double-stranded RNA (dsRNA) binding func
50 ADAR1 and ADAR2 through their non-canonical RNA editing and dsRNA binding-independent functions, alb
51 oubles the number of mutations targetable by RNA editing and enables modulation of phosphosignaling-r
52 or investigating the oncogenic mechanisms of RNA editing and expediting the identification of therape
53 ssue- and development-specific regulation of RNA editing and identify a molecular mechanism that regu
57 ermore, key enzymes for histone methylation, RNA editing and miRNA processing also showed methylation
58 specificity and potency to allow for optimal RNA editing and nucleic acid detection by spatiotemporal
62 man transcripts undergo adenosine to inosine RNA editing, and editing is required for normal developm
63 d with miRNA sequence variation (isomiR) and RNA editing, and the origin of those unmapped reads afte
64 a programmable adenosine-to-inosine (A-to-I) RNA editing approach by fusing catalytically inactivate
66 entifies posttranscriptional modification by RNA editing as a critical regulatory mechanism of vital
67 in thyroid cancer progression, and highlight RNA editing as a potential therapeutic target in thyroid
68 for binding to GRIA2 transcript, inhibiting RNA editing, as evidenced by the direct binding of ADAR3
69 vered an unexpected role for GUN1 in plastid RNA editing, as gun1 mutations affect RNA-editing effici
73 strocyte and astrocytoma cell lines inhibits RNA editing at the Q/R site of GRIA2 Furthermore, the do
74 Our study reports widespread differences in RNA editing between epithelial and mesenchymal tumors an
76 f adenosine to inosine is a frequent type of RNA editing, but important details about the biology of
80 me also illuminates the general functions of RNA editing by connecting it to particular gene regulato
82 ng of precursor RNAs via trans-splicing, and RNA editing by substitution and uridine additions both r
83 capable of robust knockdown and demonstrated RNA editing by using catalytically inactive Cas13 (dCas1
84 These transformants demonstrate that plastid RNA editing can be bypassed through the expression of nu
85 e in silico models we employ further suggest RNA editing can moonlight as a splicing-modulator, albei
86 These results indicate that within a neuron RNA editing can recode genetic information in a region-s
91 ing with a cofactor, A1CF, to form an active RNA editing complex that specifically targets APOB RNA i
92 The recoding of genetic information through RNA editing contributes to proteomic diversity, but the
94 he impact of Adad mutation on male germ cell RNA editing, CRISPR-induced alleles of each were generat
96 hows the extent to which gene expression and RNA editing differ between flies from different microcli
97 patiotemporal patterns and new regulators of RNA editing, discovered through an extensive profiling o
98 on by adenosine deamination, known as A-to-I RNA editing, diversifies the transcriptome and modulates
99 e splicing, while the second major mechanism-RNA editing due to post-transcriptional changes of indiv
100 Moreover, majority of ATG genes had A-to-I RNA editing during sexual reproduction in two ascomycete
101 ated with intellectual disability, highlight RNA-editing dysregulation in ASD and reveal new mechanis
105 lastid RNA editing, as gun1 mutations affect RNA-editing efficiency at multiple sites in plastids dur
106 ncovers a role for GUN1 in the regulation of RNA-editing efficiency in damaged chloroplasts and sugge
108 BE method using an RBP fused to a Drosophila RNA editing enzyme (ADAR) to globally map the mRNA targe
109 by Ishizuka et al. (2018) show that deleting RNA editing enzyme ADAR1 could induce higher cell lethal
115 2 (adenosine deaminase that acts on RNA), an RNA editing enzyme, is expressed outside of the nucleus
116 Here we show that loss of function of the RNA-editing enzyme ADAR1 in tumour cells profoundly sens
119 mportance of diversity of ADAR isoforms, key RNA editing enzymes linked with the innate immune system
120 ng has relied on overexpression of exogenous RNA editing enzymes or of endogenous human ADAR (adenosi
121 gile X proteins FMRP and FXR1P interact with RNA-editing enzymes (ADAR proteins) and modulate A-to-I
126 nt studies have revealed thousands of A-to-I RNA editing events in primates, but the origination and
127 pipeline for calling SNVs including SNPs and RNA editing events in RNA-seq reads, with our rigorous r
128 majority of mutations we identify are likely RNA editing events indicating that such information can
129 ver, the available software tools predicting RNA editing events utilise algorithms that do not accoun
131 Its conservation across land plants and RNA editing events, which restore conserved amino acids,
137 The selective enrichment of non-canonical RNA-editing events within MNR adjacency provides a negat
139 ting interacting protein/multiple organellar RNA editing factor (RIP/MORF) boxes, which are required
141 d orthologs to putative Arabidopsis thaliana RNA editing factor PPR proteins, RIP2, RIP9, RIP1, OZ1,
142 lastid-specific ribosomal protein, OTP86, an RNA editing factor, and cpPNP, the chloroplast isozyme o
143 identification of several different types of RNA editing factors in plant organelles suggests complex
145 ggesting stronger cis-directed regulation of RNA editing for most sites, although the small set of co
147 -uridine (C-to-U) RNA editor, referred to as RNA Editing for Specific C-to-U Exchange (RESCUE), by di
149 hat a long noncoding RNA can regulate A-to-I RNA editing, further expanding the functional repertoire
155 al pathway involved in synaptic development, RNA editing, has not yet been studied on a genome-wide s
159 red through an extensive profiling of A-to-I RNA editing in 8,551 human samples (representing 53 body
160 uncover a molecular mechanism that regulates RNA editing in a neural- and development-specific manner
161 , a uniquely dual-targeted factor for C-to-U RNA editing in angiosperms reveals low evidence for impr
162 ompetition score for forming circulation and RNA editing in back-splicing flanking introns; (ii) a tw
163 ic sequencing uncovered 1000 sites of C-to-U RNA editing in both species, plus a small number (< 60)
164 These findings reinforce the importance of RNA editing in brain development and introduce ADARB1 as
170 identified acr molecules may enable precise RNA editing in Cas13-based application and study of phag
173 charge at site 607, the site that undergoes RNA editing in GluA2 subunits replacing glutamine to arg
176 seful resource for the functional effects of RNA editing in long noncoding RNAs (lncRNAs), we systema
180 nase, APOBEC3G, induces site-specific C-to-U RNA editing in natural killer cells, lymphoma cell lines
181 ion or RNA processing, as well as changes in RNA editing in response to cellular perturbations or sti
183 The findings demonstrate widespread altered RNA editing in schizophrenia and its genetic regulation,
186 ecent reports suggesting increased levels of RNA editing in squids thus raise the question of the nat
188 ere, we report a high level of ADAR-mediated RNA editing in the bumblebee, despite the lack of an ADA
189 er, our results suggest a potential role for RNA editing in the epileptic hippocampus in the occurren
190 ecifically recognize target sites for C-to-U RNA editing in the transcriptomes of plant chloroplasts
192 n is solely sufficient for catalyzing C-to-U RNA editing in vitro Monomeric fractions possessed the h
193 hes, we show that absence of ADAR1-dependent RNA editing induces aberrant innate immune responses thr
194 stid editing factor, ORRM6, does not contain RNA editing interacting protein/multiple organellar RNA
210 function; however, little is known about how RNA editing is dynamically regulated between the many fu
216 traits, metabolites, gene expression levels, RNA editing levels and DNA methylation, a series of smal
219 diting, or by transcriptome scale changes in RNA editing levels that may affect innate immune signali
220 any of which are diversified by splicing and RNA editing, localize to >20 excitatory and inhibitory n
221 e C. papaya chloroplast genome, there are 46 RNA editing loci with an average RNA editing efficiency
224 e transcriptome between different neurons by RNA editing may account for functional differences betwe
226 Post-transcriptional adenosine-to-inosine RNA editing mediated by adenosine deaminase acting on RN
227 rpin stem in COMP can lead to a non-genetic, RNA editing-mediated substitution in COMP that may then
230 l divergence including alternative splicing, RNA editing, nuclear pore composition, RNA-binding prote
231 has demonstrated unique and broad utility in RNA editing, nucleic acid detection, and disease diagnos
232 f ADAR substrates and the features governing RNA editing observed in our study will assist in the rat
237 OTEIN6 (ORRM6) result in the near absence of RNA editing of psbF-C77 and the reduction in accD-C794 e
243 , endocannabinoids signaling pathway and the RNA editing pathway were found to be dysregulated in EC.
244 ue features of AIDD are its ability to infer RNA editing patterns, including ADAR editing, and inclus
248 Here, we carry out integrative analysis of RNA editing profiles between epithelial and mesenchymal
250 modest region-specific alterations in Htr2c RNA editing profiles, while Htr2c alternative RNA splici
251 an lymphoblastoid cell lines by combining an RNA editing QTL (edQTL) analysis with an allele-specific
252 arily induced by the human immune system via RNA editing, rather than being signatures of adaptation.
254 Finally, a transcriptome-wide analysis of RNA editing reveals that tens of thousands of editing si
255 ), and created selective curbing of unwanted RNA editing (SECURE)-BE3 variants that have reduced unwa
258 similar to gun1 MORF2 further interacts with RNA-editing site-specificity factors: ORGANELLE TRANSCRI
259 he minimum requirements for establishing new RNA editing sites and suggest that the evolutionary dyna
262 curately detected more than 2 million A-to-I RNA editing sites from next-generation sequencing (NGS).
268 d fly, and observed an appreciable number of RNA editing sites which can significantly impact the sec
269 presence of the following sequence features: RNA editing sites, simple repeat sequences, self-chains,
271 g (RNA-seq) enables global identification of RNA-editing sites in biological systems and disease.
272 is and are regulated by post-transcriptional RNA editing, splice variation, post-translational modifi
273 pursued one of the first transcriptome-wide RNA editing studies in AD by examining RNA sequencing da
277 rypanosoma brucei possesses a highly complex RNA editing system that uses guide RNAs to direct the in
279 in prion disease neuropathogenesis, whereby RNA-editing targets in a humanized sCJD mouse model were
280 rrently used tests and introduce the method, RNA-editing tests (REDITs), a suite of tests that employ
281 g frames can be accessed through alternative RNA editing that shifts the translated reading frame.
284 occurrence of these recent gain and loss of RNA editing through DNA point mutation is significantly
285 y that enables comparative quantification of RNA editing through subcellular localization changes of
286 erms, two codons of chlB mRNA are changed by RNA editing to codons encoding evolutionarily conserved
288 Here, we apply the approach of site-directed RNA editing to repair, at the mRNA level, a disease-caus
290 TPase function across disparate systems like RNA editing, translation, metabolism, DNA repair, and bi
291 polymorphisms, polymorphisms associated with RNA editing variation are located closer spatially to th
294 cleavage is a likely point of regulation for RNA editing, we elucidated endonuclease specificity in v
295 the influence of genetic variation on A-to-I RNA editing, we integrate genomic and transcriptomic dat
296 ion" and "seizures." Genes with differential RNA editing were preferentially enriched for genes with
297 ross Ajugoideae, and are generally devoid of RNA editing, whereas moderately diverged genes accelerat
298 R) orthologs and are believed to lack A-to-I RNA editing, which is the most prevalent editing of mRNA
299 ing those that contain ribosomal slippage or RNA editing without prior knowledge of the virus to be a