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1 coordinate strand annealing and the nascent RNA transcript.
2 the highly controlled release of the nascent RNA transcript.
3 emplate is repetitively added to the nascent RNA transcript.
4 II), synthesizing a complementary messenger RNA transcript.
5 gested by a 10.4-fold reduction in L-protein RNA transcript.
6 f the beta subunit, blocking the path of the RNA transcript.
7 ds to the 3'-untranslated region of the pgdA RNA transcript.
8 predicted to alter the splicing of the DOK7 RNA transcript.
9 gene within sequences of BGL3, an intergenic RNA transcript.
10 aplotype and located in the 5' region of the RNA transcript.
11 elements at virtually any location within an RNA transcript.
12 on when a DNA duplex is invaded by a nascent RNA transcript.
13 change on specific nucleotide sequence in an RNA transcript.
14 n complex (CAP-TAC) with and without de novo RNA transcript.
15 pendent messenger RNA levels and splicing of RNA transcripts.
16 RBPs), which coordinate regulatory events on RNA transcripts.
17 promoter controlling the expression of novel RNA transcripts.
18 agments do not lead to observable changes in RNA transcripts.
19 ions to produce genome- and subgenome-length RNA transcripts.
20 ons as single units from precursor messenger RNA transcripts.
21 identification of protein-coding regions in RNA transcripts.
22 ulation of both spliced and nonspliced viral RNA transcripts.
23 se-pairing of associated siRNAs with nascent RNA transcripts.
24 late for RNA polymerase V-mediated noncoding RNA transcripts.
25 TAP in the nuclear export of gammaretroviral RNA transcripts.
26 hput sequencing of DNA and its corresponding RNA transcripts.
27 chemistry for improved spatial detection of RNA transcripts.
28 events, gene fusions and other variations in RNA transcripts.
29 o acids increase hepatic cyclin D1 messenger RNA transcripts.
30 le, leading to the release of short abortive RNA transcripts.
31 NA molecules that are complementary to known RNA transcripts.
32 ross many sites in granule proteins and long RNA transcripts.
33 hundreds or even thousands of protein-coding RNA transcripts.
34 tially reduces the levels of Pol V-dependent RNA transcripts.
35 have revealed a large number of un-annotated RNA transcripts.
36 ion of expressed genes and reconstruction of RNA transcripts.
37 hancers, MyoD1-binding events, and noncoding RNA transcripts.
38 using a series of full-length prequantified RNA transcripts.
39 oteins to repress the stability of messenger RNA transcripts.
40 sms that undergo C-to-U editing of organelle RNA transcripts.
41 tion of both expressed coding and non-coding RNA transcripts.
42 ons can alter the function and metabolism of RNA transcripts.
43 gulatory regions proximal to long non-coding RNA transcripts.
44 anism's transcriptome, the sum of all of its RNA transcripts.
45 lls, SUV39H1 associates with alpha-satellite RNA transcripts.
46 viruses and other pharmacologically relevant RNA transcripts.
47 esholds in deep-sequencing datasets of short RNA transcripts.
48 aB signaling, and heat shock protein pathway RNA transcripts.
49 n of transposable element (TE)-derived small RNA transcripts.
52 R) to measure relative fecal IL-8 and CXCL-5 RNA transcript abundances, and quantitative PCR to enume
54 s systematic nucleotide insertion throughout RNA transcripts, altering previous views that RNA editin
55 Due to the large sizes and abundance of the RNA transcripts, an efficient and accurate RNA structure
56 d allow alteration and imaging of endogenous RNA transcripts analogous to CRISPR/Cas-based genomic to
58 d from Salmonella 5'-leader of the ribosomal RNA transcript and has a 'stem' structure-containing pre
59 on by promoting both the dissociation of the RNA transcript and the closing of the transcription bubb
60 that persistent hybrids between the nascent RNA transcript and the template DNA strand at CTG.CAG tr
61 in the length and sequence at the 5' end of RNA transcripts and can be important for gene regulation
62 l of HIV, and with levels of HLA-C messenger RNA transcripts and cell-surface expression, but the mec
63 lternative splicing expands the diversity of RNA transcripts and plays an important role in tissue-sp
64 g technologies facilitate discovery of novel RNA transcripts and protein isoforms, applications rangi
66 ) for the simultaneous detection of specific RNA transcripts and proteins, greatly enhancing the spat
68 lymphocytes triggers the return of XIST/Xist RNA transcripts and some chromatin marks (H3K27me3, ubiq
69 hanced the cytoplasmic accumulation of viral RNA transcripts and the expression of viral proteins wit
70 dertake an unbiased, total genome screen for RNA transcripts and their protein products that affect a
71 eotide, catalyze its addition to the growing RNA transcript, and move stepwise along the DNA until a
72 ly 16,000) barcoded sequences, production of RNA transcripts, and analysis of transcript ends and tra
73 smic transport of both spliced and unspliced RNA transcripts, and RNA export mechanisms of gammaretro
74 sequencing (NGS) methodologies by targeting RNA transcripts, and therefore detecting only replicatin
77 ctor family 2 (TFF2) protein, TFF2 messenger RNA transcripts are concentrated in cells above the neck
79 ficiency with which individual pre-messenger RNA transcripts are productively processed across differ
84 with this assay and enables the detection of RNA transcripts at rates comparable to workflows not inc
85 this suggests that the retention of nascent RNA transcripts at their site of expression represents a
86 eins, where sequence-specific binding to two RNA transcripts, ATPH: and PSAJ, HAS BEEN DEMONSTRATED T
87 assessed the effectiveness of a whole-blood RNA transcript-based model as a prognostic biomarker in
90 ermidis (S. epidermidis) Csm (SepCsm) cleave RNA transcripts, but not ssDNA, at the transcription bub
91 as a standalone RNase that degrades invader RNA transcripts, but the mechanism linking invader sensi
92 tribution of N(6)-methyladenosine (m(6)A) in RNA transcripts by analyzing different subcellular fract
94 by RNA polymerases in vitro or in vivo, the RNA transcript can thread back onto the template DNA str
95 Here, we demonstrate that protein-coding RNA transcripts can crosstalk by competing for common mi
96 e transcription and the technical failure of RNA transcript capture, often render traditional dimensi
97 ced tethering of CG9754 to nascent messenger RNA transcripts causes cotranscriptional silencing of th
99 ccessfully identified thousands of mammalian RNA transcripts containing the modification, it is extre
102 wer of high-throughput sequencing to measure RNA transcript counts at an unprecedented accuracy.
104 eq) to simultaneously probe all intermediate RNA transcripts during transcription by stalling elongat
105 t ( approximately 160-nucleotide) non-coding RNA transcript employed by adenoviruses to subvert the i
107 of tandem sequences present in the 5' UTR of RNA transcripts encoding several tryptophan metabolism g
108 nd remarkably high levels of retrotransposon RNA transcripts, especially for some human endogenous re
109 characterization of previously un-annotated RNA transcripts expressed by the spirochete during murin
113 analysis was carried out on the IgA and IgG RNA transcripts expressing IGHV3 genes in all parotid bi
114 ric (FDM) identifies regions of differential RNA transcript expression between pairs of splice graphs
118 size that oxidative modification of specific RNA transcripts following formaldehyde exposure denotes
119 using an RNA transcript or a DNA copy of the RNA transcript for DSB repair, respectively, and a new m
120 is of PH via the direct binding to messenger RNA transcripts for degradation or inhibition of transla
121 h, which correlated with an upregulation of RNA transcripts for ecm and a decrease in the levels of
122 s that flank the 16S region of the ribosomal RNA transcript, forming a complex with RNA polymerase th
123 identified regulatory mechanisms in which an RNA transcript forms a DNA duplex.RNA triple helix with
126 20 also results in accumulation of noncoding RNA transcripts from centromeric cores, a feature common
127 splicing in Drosophila, we sequenced nascent RNA transcripts from Drosophila S2 cells as well as from
130 oblasts with non-replicating, non-translated RNA transcripts from RNA viral genomes with differing de
133 -phage DNA (10(5)-10(7) starting copies) and RNA transcripts from the GAPDH housekeeping gene (5.45 n
134 uced by alternative splicing of long primary RNA transcripts from the Ig heavy chain (Igh) locus and
135 with in vitro-transcribed full-length capped RNA transcripts from the infectious clones of each singl
137 nd demonstrated simultaneous measurements of RNA transcripts from ~10,000 genes in individual cells w
142 small RNAs target and regulate complementary RNA transcripts, has well-characterized roles in post-tr
143 sequencing (8-oxoG RIP-seq) to identify 343 RNA transcripts heavily enriched in oxidations in human
144 talled-transcription assay, we revealed that RNA transcripts helped to populate quadruplexes at the e
145 unscrunching states without dissociating the RNA transcript, implying the existence of backtracking t
146 s RNAP-RNA contacts that stabilize the short RNA transcript in the active site and demonstrates that
147 ts with elongating complexes and the nascent RNA transcript in ways that stimulate pausing and termin
148 e an optimised approach for detecting single RNA transcripts in a cell-type specific manner in frozen
152 action (PCR) was performed to measure HLA-DR RNA transcripts in conjunctival cells taken by impressio
153 PRO-seq) and analyzed nascent mtDNA-encoded RNA transcripts in diverse human cell lines and metazoan
154 c targets in aggressive tumors, we sequenced RNA transcripts in five snap frozen retinoblastomas whic
157 sed a 13-fold increase in HERV-K (HML-2) gag RNA transcripts in Jurkat T cells and a 10-fold increase
158 re we present a strategy to visualize single RNA transcripts in living cells using molecular beacons
159 that RBMBs can also be used to image single RNA transcripts in living cells, when the target RNA is
163 e-copy DNA targets and corresponding nascent RNA transcripts in preimplantation embryos and during sp
165 , this study provided global long non-coding RNA transcripts in the blood of patients with KD, IVIG-r
170 ory response for both genes and unique small RNA transcripts in the segmental dosage series we tested
171 developed based on digital gene counting of RNA transcripts in urine as a means to detect prostate c
173 In budding yeast, a number of these unwanted RNA transcripts, including spliced-out introns, are firs
174 age cells causes aberrant splicing of myriad RNA transcripts, including those that encode the essenti
175 hase of EBV infection, noncoding EBV-encoded RNA transcripts induced cellular cytokine synthesis, and
179 ribosomes can bind concurrently to the same RNA transcript, leading to the functional coupling of tr
180 pairing to recognize sequences in messenger RNA transcripts, leading to translational repression and
181 n genes with m6dA are associated with higher RNA transcript levels but identifies allele-specific gen
182 L2 family members based on immunoblotting or RNA transcript levels correlated poorly with the activit
184 tial and altitudinal variations in messenger RNA transcript levels of ReCHSs correlating positively w
188 muscle transcriptome also revealed 461 novel RNA transcripts, likely muscle-expressed long non-coding
189 40 microRNAs and their host long non-coding RNA transcript (lnc-MGC) are coordinately increased in t
190 we report that CCAT2, a novel long noncoding RNA transcript (lncRNA) encompassing the rs6983267 SNP,
191 iously unannotated intergenic long noncoding RNA transcripts (lncRNA) or isoforms that are associated
192 ing NF-Y, p53, and sp1, indicating that such RNA transcripts may function as decoy targets or traps f
193 osed packets can transfer specific proteins, RNA transcripts, microRNAs, and even DNA to target cells
194 here we present evidence that mitochondrial RNA transcripts (mtRNA) are not limited to policystronic
195 which we named myosin heavy-chain-associated RNA transcripts (Myheart, or Mhrt), are cardiac-specific
196 cently uncovered a large number of noncoding RNA transcripts (ncRNAs) in eukaryotic organisms, and th
197 we have identified new sense and anti-sense RNA transcripts, novel mRNAs and mi/siRNA-sized RNA frag
198 se single-genome sequencing to find that the RNA transcripts observed following LRA administration ar
200 ith its host, it is necessary to analyze the RNA transcripts of both the host and pathogen throughout
201 psies after chemotherapy displayed increased RNA transcripts of genes associated with CSCs and TGF-be
205 approach to discover new oncogene-regulated RNA transcripts of potential clinical relevance in cance
206 the amounts of both full-length and internal RNA transcripts of U3-minus vectors are reduced in the n
207 Previous studies have identified a panel of RNA transcripts of very low protein-coding potential in
208 accumulations of both spliced and unspliced RNA transcripts of XMRV and MLV, resulting in their nucl
210 plated DSB repair (R-TDR and c-TDR) using an RNA transcript or a DNA copy of the RNA transcript for D
211 of the 8 internal viral proteins, the viral RNA transcripts, or the host response to these molecules
212 incorporation of synthetic nucleosides into RNA transcripts, particularly at or near the promoter.
213 e consistent inability of cells to recognize RNA transcripts possessing GORS extended to downstream d
217 comparative genomic hybridization (CGH) and RNA transcript profiling, and we compared the genomic di
218 equence, including epigenetic modifications, RNA transcripts, proteins, and metabolites, which togeth
219 thin tens of milliseconds in the presence of RNA transcripts provided justification for the co-transc
220 n through direct incorporation into a target RNA transcript rather than through a traditional antisen
221 uential assembly of the human spliceosome on RNA transcripts regulates splicing across the human tran
222 gle-molecule fluorescence study unveils that RNA transcript release precedes RNA polymerase (RNAP) di
224 port of partially spliced or unspliced HIV-1 RNA transcripts requires binding of the viral protein re
225 rdinated across numerous introns in metazoan RNA transcripts requires quantitative analyses of transi
226 s) are small sequences of DNA able to target RNA transcripts, resulting in reduced or modified protei
227 ng and increased destruction of nascent TERC RNA transcripts, resulting in telomerase deficiency and
228 studies using high-throughput sequencing of RNA transcripts (RNA-seq) of an isogenic DeltaicgR mutan
229 transcriptome (high-throughput sequencing of RNA transcripts [RNA-seq]) data reveals that few of the
230 (lncRNA) that we named Stem Cell Inhibitory RNA Transcript (SCIRT), which was markedly upregulated i
231 ribed into RNA, and studies with a synthetic RNA transcript sequence demonstrated formation of a high
233 equivalents/ml, whereas use of a quantified RNA transcript standard showed the same trend but had va
234 odel is the cotranscriptional folding of the RNA transcript, sterically inhibiting the extent of back
236 alyzes both nucleotide addition required for RNA transcript synthesis and excision of incorrect nucle
239 rom Rtt103 reduces binding to Rrp6/Trf4, and RNA transcripts terminated by Nrd1(CID(Rtt103)) are pred
241 These studies introduce a novel T-cassette RNA transcript that improves RNA display from a four-way
242 2a cluster, also known as 'oncomiR-1', is an RNA transcript that plays a pivotal regulatory role in c
243 us RNAs (ceRNAs) were recently introduced as RNA transcripts that affect each other's expression leve
244 uency in RSV-infected cells and yields small RNA transcripts that are heterogeneous in length but mos
245 ing and analyzing diverse classes of primary RNA transcripts that are of increasing biological intere
248 roRNAs (miRNAs) are small non-protein coding RNA transcripts that can regulate the expression of mess
251 9, are expressed in Wolbachia from noncoding RNA transcripts that contain precursors with stem-loop s
252 polyadenylation (ApA) to generate messenger RNA transcripts that differ in the length of their 3' un
253 t posttranscriptional modifications of viral RNA transcripts that do not change the nucleotide sequen
254 The identification of the presence of large RNA transcripts that do not code for proteins but that m
255 a sizable proportion of the genome generates RNA transcripts that do not code for proteins, but may h
256 iscovery of extensive transcription of large RNA transcripts that do not code for proteins, termed lo
257 transcriptionally active proteins as well as RNA transcripts that have been subjected to adenosine-to
258 MicroRNAs (miRNAs) are short non-coding RNA transcripts that have the ability to regulate the ex
260 motifs in the untranslated regions (UTRs) of RNA transcripts that sense metabolite levels and modulat
262 is study, we demonstrate successful usage of RNA transcript therapy (RTT) as an exogenous human FXN s
263 Most protein coding genes generate multiple RNA transcripts through alternative splicing, variable 3
265 st-transcriptional level and use an extended RNA transcript to co-localize all circuit sensing, compu
266 the ability of relatively unstructured model RNA transcripts to activate PKR to inhibit translation,
267 ents and guide Argonaute proteins to nascent RNA transcripts to induce co-transcriptional gene silenc
268 adaptable and expandable system of in vitro RNA transcripts to serve as a combined positive control
270 racterized by the ability of a wide range of RNA transcripts to vie for microRNA binding and alleviat
271 ousands of long intergenic non-coding (linc) RNA transcripts, together with recent evidence that linc
272 s Project was launched to contribute maps of RNA transcripts, transcriptional regulator binding sites
273 d for Ser(5)-phosphorylated Pol II and short-RNA transcripts, two hallmarks of transcription initiati
274 iption start sites (TSSs) and validate novel RNA transcripts using Northern blots and luciferase prom
276 ncode IgM and IgD from heterogeneous nuclear RNA transcripts via alternative splicing, lack intron an
278 of exonic sequences in the splicing of human RNA transcripts, we conducted saturation mutagenesis of
280 , tryptase, and carboxypeptidase A messenger RNA transcripts were detected by quantitative reverse tr
283 we report here that some of these C. parvum RNA transcripts were selectively delivered into the nucl
284 cation of a considerable amount of noncoding RNA transcripts, which are increasingly recognized for t
285 ort of unspliced and partially spliced viral RNA transcripts, which encode the viral genome and the g
286 cies such as long noncoding RNA and circular RNA transcripts whose presence had not been previously o
287 emains unresolved because replacement of the RNA transcript with a neocassette has no obvious phenoty
288 mation of fully modified and highly emissive RNA transcripts with (th)G replacing all guanosine resid
289 of transcribing novel unspliced forms of HIV-RNA transcripts with competent open reading frames (ORFs
296 detected </=10 copies/reaction of quantified RNA transcripts, with a linear dynamic range of 8 log un
297 is cotranscriptionally recruited to nascent RNA transcripts, with particular enrichment at intronic
300 e possibility of ab initio reconstruction of RNA transcripts without appealing to the ontology of "GT