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1 RNA interference (RNAi) is a natural process through whi
2 RNA oligonucleotides with a single incorporated zebulari
3 RNA polymerase II (RNA Pol II) contains a disordered C-t
4 RNA sequence analysis of pn-csERRalpha/gamma knockdown h
5 RNA-Seq profiling shows differential expression of many
7 viral protein Gag selects full-length HIV-1 RNA from a large pool of mRNAs as virion genome during v
9 40 throat swabs were positive for SARS-CoV-2 RNA by quantitative PCR, suggesting community transmissi
10 umbers (>=500 copies/reaction) of SARS-CoV-2 RNA were consistently detected by the multiplex RT-qPCR.
11 piratory syndrome coronavirus 2 (SARS-CoV-2) RNA in respiratory samples is the standard method for di
12 e C. papaya chloroplast genome, there are 46 RNA editing loci with an average RNA editing efficiency
16 t single nucleotide polymorphisms can affect RNA secondary structure, and here we show that single nu
17 t single nucleotide polymorphisms can affect RNA-protein interactions from outside binding motifs thr
20 rrelated their sedimentation profiles to all RNAs, confirming known interactions and predicting new a
22 scaffold with basic patches constituting an RNA-binding surface exhibiting a preference for binding
23 le X Mental Retardation Protein (FMRP) is an RNA binding protein that regulates translation and is re
26 osteoclast ablation by denosumab (DMAb) and RNA-sequencing of bone biopsies from postmenopausal wome
29 tic parameters of cellular and viral DNA and RNA polymerases with respect to cellular levels of their
31 ti-turnover enzyme; cleaves ssDNA, dsDNA and RNA targets in a single assay; and operates at elevated
33 odification, transcriptional regulation, and RNA processing, and thereby mediating developmental and
35 nal elements e.g. small RNAs, long antisense RNAs or untranslated regions (UTRs) of mRNA transcripts.
37 l regulates nuclear and chromatin-associated RNAs after chromosome condensation and nuclear envelope
41 results in cleavage of B2 RNA, release of B2 RNA from chromatin, and activation of thermal stress gen
42 omb protein, EZH2, results in cleavage of B2 RNA, release of B2 RNA from chromatin, and activation of
44 ay between the m6A target and a biotinylated RNA oligomer bearing a single m6A enzymatically labelled
45 during brain development, we sequenced both RNA fractions from homogenate prenatal and adult human p
48 vast and diverse virome that is dominated by RNA viruses, with major additional contributions from re
49 T, stimulates transcriptional elongation by RNA polymerase (Pol) II and regulates cell growth and di
50 of telomeres (ALT)], TERT mRNA expression by RNA-sequencing, whole-genome/exome sequencing, and clini
51 xpressed from an intron that is generated by RNA polymerase II transcribing the circular viral genome
52 per-enhancer activities can be quantified by RNA-seq and a user-friendly data portal, enabling a broa
53 of large curated datasets from human cancer RNA-Seq, where we identify novel putative biomarker gene
54 cotinamide adenine dinucleotide (NAD)-capped RNAs in mammalian cells and a role for DXO and the Nudix
60 ng disease.Methods: We performed single-cell RNA sequencing of sputum cells from nine subjects with C
63 port for the first time in-depth single-cell RNA sequencing, combined with spatial transcriptomics an
67 we integrated recently published single-cell RNA-sequencing (scRNA-seq) data from 727 peripheral and
68 We analyzed previously generated single-cell RNA-sequencing (scRNA-seq) data of gastric corpus epithe
69 gy of blinding diseases, we used single-cell RNA-sequencing (scRNA-seq) to analyze the transcriptomes
71 viral entry-associated genes in single-cell RNA-sequencing data from multiple tissues from healthy h
80 t into how cells and viruses use a conserved RNA phosphatase to regulate and respond to ppp-RNA speci
83 RIG-I-like receptors (RLR) are cytosolic RNA sensors that signal through the MAVS adaptor to acti
84 onal studies suggest that the loss of dAKAP1-RNA interactions reduces mitochondrial electron transpor
85 ce, C57BL/6J and BALB/cJ, and deploying deep RNA-Seq complemented with quantitative RT-PCR, we found
87 es by sculpting the transcriptome to degrade RNAs encoding growth-phase factors and, thus, support th
88 mice expressing a picornavirus RNA-dependent RNA polymerase (RdRP) outside the viral context (RdRP mi
89 ing are instead processed into RNA-dependent RNA polymerase 6-dependent small RNAs, resulting in thei
90 ssion problem, and have generated high depth RNA-sequencing on FUS mutants in parallel to FUS knockou
95 eratures have measurable differences in DNA, RNA and protein composition that allow OGT prediction fr
98 he absence of starch co-precipitation during RNA extraction resulted in enhanced yield and quality of
99 Together, our findings indicate that dynamic RNA methylation plays an important regulatory role in ol
103 use this underexploited resource to extract RNA and identify genes that characterize active (endocap
108 al framework presented here is developed for RNA hairpin systems, the general method may be applied t
111 Among all the global alignment tools for RNA 3D structures, STAR3D has become a valuable tool for
115 oteins in regulating GSC division frequency, RNA-i against seven out of 35 G-protein coupled receptor
116 el molecules (UBXN4, MFSD12, and ACTR6) from RNA-seq served as potential prognostic markers for lung
117 sites nested within annotated ORFs and from RNAs previously considered noncoding, it is becoming cle
119 fection [dpi]) and quantified viral (SIV gag RNA), synaptic (PSD-95; synaptophysin), axonal (neurofil
122 ite excitement around ProQ as a novel global RNA-binding protein, and its potential to serve as a mat
124 Genotype-Tissue Expression Project (GTEx) RNA-seq data were used to construct the top 10% specific
128 eted to the CDKL5 promoter using three guide RNAs causes significant reactivation of the inactive all
132 ng black patients, those with detectable HIV RNA, and those with lower CD4 cell counts (all P < .05).
133 of transcribing novel unspliced forms of HIV-RNA transcripts with competent open reading frames (ORFs
135 uniquely advantageous model for studying how RNA triggers disease because: (i) Affected tissue is rou
143 fic gene deletion of Traf3ip3 have increased RNA virus-triggered IFN-I production and reduced suscept
145 ny other regulatory mechanisms can influence RNA metabolism and the capacity of neurons to adapt.
146 ncing and the other configuration inhibiting RNA unwinding compared with the unconstrained protein.
147 (lncRNA) that we named Stem Cell Inhibitory RNA Transcript (SCIRT), which was markedly upregulated i
151 RNAi) by topically applied small interfering RNA has potential applications for plant functional geno
152 ial use of allele-specific small interfering RNA in treating KID syndrome and other dominant genetic
153 letion of Mm47, as well as small interfering RNA studies in mice primary macrophages, showed that the
154 Notably, allele-specific small interfering RNA treatment caused only low-level off-target effects i
155 R-LIKE3 into 24-nucleotide small interfering RNAs (siRNAs) that guide RNA-directed DNA methylation.
156 of NAD(+) capping are instead processed into RNA-dependent RNA polymerase 6-dependent small RNAs, res
158 udies show that PGC-1alpha binds to intronic RNA sequences, some of them controlling transcript level
159 dered proteins (IDPs) and nucleic acids like RNA and other polynucleotides play a key role in modulat
162 and its potential to serve as a matchmaking RNA chaperone, significant gaps remain in our understand
163 ypothesize a scenario where levels of mature RNA species or editing in the single T. cruzi mitochondr
165 oRNA (miRNA) target sites within a messenger RNA (mRNA) can act cooperatively, leading to more repres
170 e blood cells (PWBCs), and circulating micro RNAs in plasma, are associated with female fertility, me
171 powerful technology for globally monitoring RNA translation; ranging from codon occupancy profiling,
172 that Gag-RNA interactions occur at multiple RNA sites during genome packaging; furthermore, there ar
175 atively controlled by a novel long noncoding RNA (lncRNA) that we named Stem Cell Inhibitory RNA Tran
180 w that it efficiently crosslinks noncovalent RNA complexes with mimimal sequence bias and establish t
181 es of TRAMP components with multiple nuclear RNA binding proteins, revealing preferential colocalizat
187 on resulted in enhanced yield and quality of RNA with RIN values of 7-9, quantified using a bioanalyz
192 those that measure total cellular uptake of RNA therapeutics, which includes both productive and non
194 ptamer generation, site-specific labeling of RNAs, semi-synthetic organism creation, and unnatural-am
197 review, we address how a broadly operational RNA regulatory complex interfaces with cell type-specifi
198 a noncanonical secondary structure of DNA or RNA which can enhance or repress gene expression, yet th
199 l method may be applied to investigate other RNA systems, such as multiway junctions or pseudoknots i
203 of peripheral blood mononuclear cells (PBMC) RNA from subjects enrolled in the Clinical Trials in Org
205 at transgenic mice expressing a picornavirus RNA-dependent RNA polymerase (RdRP) outside the viral co
207 mpetition for binding sites among protective RNA-binding proteins and decay factors, PTBP1 promotes d
208 NA structure significantly modulates protein-RNA interaction dynamics and can facilitate real-time co
209 and MRP are highly conserved, multi-protein/RNA complexes with essential roles in processing ribosom
211 ation, we detected a higher abundance of PUN RNA in the cytoplasm compared to wild-type-infected cell
212 ion of full-length transcripts in short-read RNA-Seq data, which encourages the development of method
213 Compared to previous SBT methods, on real RNA-seq data, HowDe-SBT can construct the index in less
215 We also compare these methods using real RNA-seq data from a study of major depressive disorder.T
216 Here, we globally identify ZMAT3-regulated RNAs and their binding sites at nucleotide resolution in
224 as that encoding the small subunit ribosomal RNA has revealed the extensive diversity of bacterial li
228 o use these three metrics to select sensible RNA-seq pipelines for the improved accuracy, precision,
230 th chromatin immunoprecipitation sequencing, RNA sequencing, and expression quantitative trait loci d
232 5582 results in the induction of HIV and SIV RNA expression in the blood and tissues of ART-suppresse
234 A-dependent RNA polymerase 6-dependent small RNAs, resulting in their continued turnover likely to fr
235 on-coding but functional elements e.g. small RNAs, long antisense RNAs or untranslated regions (UTRs)
236 g of the nuclear Argonaute NRDE-3 with small RNAs that normally effect maternal piRNAs, which prevent
239 ity to preferentially interact with specific RNAs, Rrp6p utilizes its selectivity to discriminate aga
241 es from the NYGC ALS cohort, truncated STMN2 RNA was confined to tissues and disease subtypes marked
244 atural process through which double-stranded RNA molecules can silence the gene carrying the same cod
247 prokaryotic expression profiling by tagging RNA in situ and sequencing (PETRI-seq)-a low-cost, high-
248 d suggest combination treatments that target RNA processing and DNA repair pathways simultaneously as
251 rally, they provide additional evidence that RNA virus IBs are important immunomodulatory complexes w
256 ncRNA genes, revealing new insights into the RNA structure-function relationship, determining cis- an
258 xperiments, we introduce an extension of the RNA velocity method that leverages estimates of unproces
260 Here, we report the identification of the RNA-binding protein HuR/ELAVL1 as a central oncogenic dr
261 We show that the phosphorylation of the RNA-DNA binding protein fused in sarcoma (FUS) is higher
262 ive orientations had opposite effects on the RNA-unwinding activity of the N-terminal cassette, with
264 dy, we analyze the folding stability of this RNA genome relative to the structural landscape of other
265 Here we present Hybridization of Probes to RNA for sequencing (HyPR-seq), a method to sensitively q
266 of medically important mites based on total RNA sequencing data sets generated in this study as well
267 C200 by transfection of in vitro transcribed RNA and transient expression from transfected plasmids.
268 depend on the presence of co-transcriptional RNA/DNA hybrids (R-loops) that form in infected cells du
271 tic perturbations causing uncharged transfer RNA (tRNA) accumulation activated ISR reporter transcrip
272 sly undescribed CRISPR-Cas systems, transfer RNAs (tRNAs), tRNA synthetases, tRNA-modification enzyme
273 cleotide addition, can stimulate translesion RNA synthesis by Escherichia coli RNAP without altering
274 unctions as a molecular switch that triggers RNA-dependent LLPS in response to a rise in intracellula
275 These studies demonstrate a strategy to tune RNA structure-targeting compounds to the cellular locali
276 ity is independent of the nucleic acid type (RNA or DNA), its strandedness (single or double), and it
281 gene expression associated with CUD by using RNA sequencing of dorsal-lateral prefrontal cortex neuro
282 of G12D and G12V mice were identified using RNA sequencing and reverse-phase protein array analyses.
286 ng E1B55K or E4orf6 display defects in viral RNA processing and protein production, but previously id
289 HIV-1 reverse transcription, in which viral RNA genome is converted into double-stranded DNA, is tha
294 during development, we performed genome-wide RNA tomography sequencing on zebrafish, chicken, mouse,
295 to form stress granules by coacervating with RNA in the cytoplasm during stress and may be involved i
298 We describe the well-known interactions with RNA polymerase as well as a broader range of cellular ta
300 epeat deficient Xist rescues binding of Xist RNA to Spen and results in strictly local gene silencing