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1 RRM deletion in adult mice was triggered by injecting ra
2 RRM, or RNA-recognition motif, domains are the largest c
3 RRMs are characterized by their alpha/beta sandwich topo
4 s, we infer phylogenies for more than 12,000 RRM domains representing more than 200 broadly sampled o
7 al selection and induced fit of the U2AF(65) RRMs are complementary mechanisms for Py-tract associati
8 ring to demonstrate that the tandem U2AF(65) RRMs exhibit a broad range of conformations in the solut
11 e, we present two interesting findings about RRM domain modifications, found by mapping known PTMs on
12 US and TDP-43, which rank 1st and 10th among RRM-bearing prion candidates, form cytoplasmic inclusion
18 tic RRM proteins indicates that it is not an RRM domain but rather an all-helical protein with a fold
22 inding to 3' ends requires the La domain and RRM, a conformationally flexible C terminus allows La to
24 tion with AtMSI4; and most of the associated RRM domain proteins also contain PWWP domains that are s
25 domain contains an xRRM, a class of atypical RRM first identified in the Tetrahymena thermophila telo
26 among SRA1p orthologs and against authentic RRM proteins indicates that it is not an RRM domain but
28 symmetric platform in which the RNA-binding RRM, LRR and NTF2-like domains are arranged on one face.
30 oth steric constraints in accommodating both RRMs simultaneously at adjacent sites, and also subtle d
31 emical shift deviations are observed in both RRMs, suggesting both play a role in binding the A2RE11.
33 dopts a compact structure, showing that both RRMs engage with the target 10-nt sequences to form the
36 spectroscopy showed that the expanded Bruno RRM contains the familiar RRM fold of four antiparallel
38 so showed that a truncated form of the Bruno RRM, lacking the flexible N-terminal amino acids, forms
43 acids, forms a stable and complete canonical RRM, so that the loss of RNA binding activity cannot be
45 This domain adopts a novel non-canonical RRM fold with two additional flanking alpha-helices that
47 ids prior to the N-terminus of the canonical RRM resulted in a significantly decreased affinity of th
48 ploy aromatic residues outside the canonical RRM RNA-binding motifs to encase and wrench open the RNA
50 Nito), the only other fly protein containing RRMs and a SPOC domain, acts together with Spen to posit
51 tructural model in which contiguous CsPABPN1 RRM monomers wrap around the RNA molecule creating a sup
53 urally characterized both the PHD3 and CYP33 RRM domains and analyzed their binding to one another.
54 insight into the multiple functions of Cyp33 RRM and suggest a Cyp33-dependent mechanism for regulati
57 of H3K4me3 to PHD3 and binding of the CYP33 RRM domain to PHD3 are mutually inhibitory, implying tha
62 dular protein constructed from four domains (RRM, LRR, NTF2-like and UBA) that have been thought to b
63 is mediated by the RNA recognition domains (RRM) of serine/arginine-rich splicing factor 1 (SRSF1),
66 the expanded Bruno RRM contains the familiar RRM fold of four antiparallel beta-strands and two alpha
67 the binding specificity of three MSI family RRM domains using a quantitative fluorescence anisotropy
73 Our data highlight structural diversity in RRM-protein interactions, analogous to the one seen for
75 probing, targeted inactivation of individual RRMs and single molecule analyses revealed an unequal di
76 ies, we find that each of the two individual RRMs retain the domain structure observed in complex wit
78 at Py tract variations select distinct inter-RRM spacings from a pre-existing ensemble of U2AF(65) co
79 ortunity to select compact or extended inter-RRM proximities from the U2AF(65) conformational pool.
81 mity of the N and C termini within the inter-RRM configuration is sufficient to explain the action of
90 ultiple independent binding sites within its RRMs, PABPC interacts with importin alpha, a component o
93 nds to the N-terminal RNA Recognition Motif (RRM) and induces a conformational change that prevents R
94 ABH8), which contains RNA recognition motif (RRM) and methyltransferase domains flanking its AlkB dom
95 ed protein carries an RNA recognition motif (RRM) at its C terminus and has therefore been named Orga
97 eaturing at least one RNA recognition motif (RRM) domain and a carboxyl-terminal region enriched in s
98 ycine-rich domain and RNA recognition motif (RRM) domain have a minor contribution and the glutamine-
103 ons of the N-terminal RNA Recognition Motif (RRM) domain of spliceosomal A protein of the U1 small nu
104 protein SRRP1 and two RNA Recognition Motif (RRM) domain proteins, CP33C and CP33B, were enriched wit
105 of SR45, and not the RNA recognition motif (RRM) domain, associate independently with both U2AF(35)
108 574-3p binds multiple RNA recognition motif (RRM) domains of hnRNP L, synergizes with miR-297, reduce
109 ernary complex of the RNA recognition motif (RRM) domains of Hrp1 and Rna15 bound to this pair of RNA
110 stigated how the four RNA recognition motif (RRM) domains of Polypyrimidine tract binding (PTB) prote
111 on connecting the two RNA recognition motif (RRM) domains of U2AF2 mediates autoinhibitory intramolec
112 deletion (lacking two RNA recognition motif (RRM) domains) and is therefore missing antibody epitopes
113 r Prp24 contains four RNA Recognition Motif (RRM) domains, and functions to anneal U6 and U4 RNAs dur
114 They contain two RNA recognition motif (RRM) domains, which recognize a defined sequence element
115 AtMSI4 have distinct RNA recognition motif (RRM) domains, which we determined to be responsible for
116 PABPNs) with a single RNA recognition motif (RRM) flanked by an acidic N-terminus and a GRPF-rich C-t
118 lso interact with the RNA recognition motif (RRM) in b/Prt1, and mutations in both subunits that disr
122 ort a mutation in the RNA recognition motif (RRM) of CSTF2 that changes an aspartic acid at position
123 Mice in which the RNA recognition motif (RRM) of one of the RNA binding motif-20 alleles was flox
124 AdRSZ21 exhibits a RNA recognition motif (RRM), a CCHC type zinc finger domain (Zinc Knuckle, ZnK)
125 a domain and adjacent RNA recognition motif (RRM), the mechanisms by which La stabilizes diverse RNAs
126 s between RNA and the RNA recognition motif (RRM), which is one of the most common RNA binding domain
127 In this study, a RNA recognition motif (RRM)-containing protein, BmLARK, was identified and demo
129 o a distinct clade of RNA Recognition Motif (RRM)-containing proteins, most of which are predicted to
134 Two consecutive RNA recognition motifs (RRM) of U2AF(65) recognize a polypyrimidine tract at the
136 tains two N-terminal RNA recognition motifs (RRMs) (RRM1 and RRM2) and a 50-residue C-terminal RS (ar
137 We show that the RNA recognition motifs (RRMs) 3 and 4 of PTB can bind two distant pyrimidine tra
138 ith three N-terminal RNA recognition motifs (RRMs) and a C-terminal glutamine-rich (Q-rich) domain.
139 TIA1 contains three RNA recognition motifs (RRMs) and a C-terminal low-complexity domain, sometimes
140 is composed of three RNA recognition motifs (RRMs) and a glutamine-rich domain and binds to uridine-r
141 r protein containing RNA recognition motifs (RRMs) and a SPOC domain, is required for optimal Wg sign
143 ree highly conserved RNA recognition motifs (RRMs) in the absence of other clearly defined protein do
146 ion encompassing the RNA recognition motifs (RRMs) of PSF using a previously uncharacterized, 70 resi
147 ues between the dual RNA recognition motifs (RRMs) recognize the central nucleotide, whereas the N- a
150 its second and third RNA recognition motifs (RRMs), with specificity for U-rich sequences directed by
151 HuD possesses three RNA recognition motifs (RRMs), ZBP1 contains two RRMs and four K homology (KH) d
159 HuR contains three RNA recognition motifs (RRMs): a tandem RRM1 and 2, followed by a flexible linke
160 consisting of tandem RNA recognition motifs (RRMs; RRM1-RRM2) and a C-terminal arginine-serine repeat
161 This approach can be applied to other multi-RRM domain proteins to assess binding site degeneracy an
162 ad previously been overlooked in other multi-RRM structures, although a careful analysis suggests tha
163 A discrimination possibly common to multiple RRMs as several prominent members display a similar rear
167 st there are unique regulatory mechanisms of RRM function that have yet to be uncovered and that the
169 ing reveals a previously undescribed role of RRM-containing proteins as mitochondrial RNA editing fac
170 These findings advance our understanding of RRM domain regulation, poly(A) recognition, and are rele
171 some inhibition highlights the uniqueness of RRM domain ubiquitination - RRM domain ubiquitination de
172 ng groove in the large lobe of SRPK1 and one RRM (RRM2) on the N-terminal flank of the RS domain.
175 y proteins within these bodies contain KH or RRM RNA-binding domains as well as low complexity (LC) s
177 t the identification of ORRM4 (for organelle RRM protein 4) as a novel, major mitochondrial editing f
179 tification of two proteins, ORRM2 (organelle RRM protein 2) and ORRM3 (organelle RRM protein 3), as t
180 rganelle RRM protein 2) and ORRM3 (organelle RRM protein 3), as the first members of the ORRM clade t
181 s rather different to that observed in other RRM-RNA structures and is structurally conserved in CstF
182 tes that OA may inhibit the binding of other RRM-containing protein/s necessary for miR-16 processing
184 ed RS domain of SRSF1 interacts with its own RRM, thus competing with U1-70K binding, whereas the hyp
185 asks nuclear import signals within the PABPC RRMs, thereby ensuring efficient cytoplasmic retention o
189 /HCR1 closely cooperates with the eIF3b/PRT1 RRM and eIF1A on the ribosome to ensure proper formation
190 subunit-mRNA interaction and that the b/Prt1-RRM-j/Hcr1-a/Tif32-CTD module binds near the mRNA entry
191 ongly suggest that SR proteins with a pseudo-RRM frequently regulate splicing by competing with, rath
194 ving the structure of the human SRSF1 pseudo-RRM bound to RNA, we discovered a very unusual and seque
198 EMSA, ITC, and NMR studies show that PTB RRMs 1 and 2 bind the pyrimidine-rich internal loop of U
199 so determined crystal structures of the Puf1 RRM domain that identified a dimerization interface.
200 oteostasis of TAF15, which is the 2nd ranked RRM-bearing prion candidate, has been connected with ALS
201 complex between precursor miR-20b and Rbfox RRM shows the molecular basis for recognition, and revea
202 ence-specific binding of the conserved Rbfox RRM to miRNA precursors containing the same sequence mot
204 he sigmaNS RNA binding domain and G3BP1 RNA (RRM) and ribosomal (RGG) binding domains showed that sig
205 also called RNPC1 [RNA-binding region (RNP1, RRM) containing 1], is a target of the p53 family and mo
212 ing type II PABPs and an example of a single RRM domain protein that transitions from a homodimer to
213 eractions by polar amino acids in the single RRM domain of SLIRP and three neighbouring PPR motifs in
217 al nucleotide, whereas the N- and C-terminal RRM extensions recognize the 3' terminus and third nucle
219 se either previously observed for N-terminal RRMs of Py tract-binding protein that lack interdomain c
220 binding function is modular: the N-terminal RRMs preferentially bind to short (U/C) tracts displayed
221 cations (PTMs), ProteomeScout, we found that RRM domains are also one of the most heavily modified do
228 t RNPC1 and HuR physically interact, and the RRM domain in RNPC1 and RRM3 in HuR are necessary for th
229 s in p63 3' UTR in vitro and in vivo and the RRM domain in RNPC1 is required for binding, and regulat
232 NA or ribosomal binding but require both the RRM and RGG domains of G3BP1 for maximal viral-factory-l
233 splicing factor 1 (SRSF1), which bridges the RRM of U1-70K to pre-mRNA by using the surface opposite
234 stal structure of a construct comprising the RRM and AlkB domains shows disordered loops flanking the
235 elta5 (amino acids 1670-1962) containing the RRM, both induced comparable silencing in a tethering as
237 ation in the RRM of SRSF1 that disrupted the RRM-RRM interaction also inhibits the formation of splic
244 s with the unfolding of a beta strand of the RRM domain and binding of the unfolded region to the doc
245 volving the L3 loop, N- and C-termini of the RRM domain are collectively important for determining se
246 beta strands and the beta2-beta3 loop of the RRM domain are involved in the interaction with PHD3.
247 tes binding to UAAU, and dimerization of the RRM domain favors binding to dual UAAU motifs rather tha
248 a 1.9 A resolution crystal structure of the RRM domain of Cyp33 and describe the molecular mechanism
250 en the expanded functional repertoire of the RRM family, it was unknown whether TIA-1 RRM1 contribute
252 We solved the solution structures of the RRM in complex with poly(U) oligomers of five and seven
254 turally derived recognition consensus of the RRM with a thermodynamic description of its multi-regist
257 the RIP-RIP domain or a region spanning the RRM domain of ORRM1 demonstrated that the RRM domain is
258 Using UV cross-linking, we showed that the RRM alone binds RNA, although a larger segment extending
262 he RRM domain of ORRM1 demonstrated that the RRM domain is sufficient for the editing function of ORR
264 n that have yet to be uncovered and that the RRM domain represents a model system for further studies
266 cular dynamics simulations and show that the RRM RNA binding surface exists in different states and t
267 an alpha-helix immediately C-terminal to the RRM domain (helix C), which occludes the RNA binding sur
268 e other ALS-linked mutations adjacent to the RRM domains that also disrupt RNA binding and greatly en
270 of this alpha3-helix by appending it to the RRM of the unrelated U1A protein and show that this fusi
271 the phospho-CTD-interacting domain up to the RRM) results in a 10-fold decrease in Yra1 recruitment t
272 ble linkers like beads on a string, with the RRM and LRR domains binding RNAs and the NTF2-like and U
274 These structural differences between the RRMs were reinforced by the specificities of wild-type a
278 heir alpha/beta sandwich topology, and these RRMs use their beta-sheet as the RNA binding surface.
279 the PpTEL1 C-terminus (including this third RRM) or only 16-18 amino acids within it seriously impai
283 for binding AU-rich fas sites, yet all three RRMs were required to bind a polyU RNA with high affinit
284 e for a TIA-1 construct comprising the three RRMs and revealed that its dimensions became more compac
285 sable for splicing regulation, and the three RRMs are required for splicing regulation of each target
287 serine-arginine (SR) protein family, has two RRM domains (RRM1 and RRM2) and a C-terminal domain rich
289 recognition motifs (RRMs), ZBP1 contains two RRMs and four K homology (KH) domains that either increa
294 n that of PTB1:34, and simply mixing the two RRMs does not create an equivalent binding platform.
297 nique RNA-binding mechanism in which the two RRMs of the dimer employ aromatic residues outside the c
298 he uniqueness of RRM domain ubiquitination - RRM domain ubiquitination decreases in response to prote
300 lap of ubiquitination and acetylation within RRM domains, suggesting the possibility for ubiquitinati