ライフサイエンスコーパス: Shewanella oneidensis

1 ases in the versatile respiratory network of Shewanella oneidensis .

2 ied by MS/MS from a different microorganism (Shewanella oneidensis).

3 e of the mammalian peptide transporters from Shewanella oneidensis.

4 residue next to the RNase domain of HepT in Shewanella oneidensis.

5 microbes such as Desulfovibrio vulgaris and Shewanella oneidensis.

6 ts were performed in a gamma-proteobacterium Shewanella oneidensis.

7 cherichia coli, Saccharomyces cerevisiae and Shewanella oneidensis.

8 yses of global tryptic digest of the microbe Shewanella oneidensis.

9 substrate from the metal-respiring bacterium Shewanella oneidensis.

10 nas aeruginosa, Pseudomonas fluorescens, and Shewanella oneidensis.

11 a gene encoding a multiple-domain ACCase in Shewanella oneidensis.

12 s prophage to excise at cold temperatures in Shewanella oneidensis.

13 ter for Kdo8N biosynthesis was identified in Shewanella oneidensis.

14 cerevisiae and TyrR-LiuR network in bacteria Shewanella oneidensis.

15 for Escherichia coli, Bacillus subtilis, and Shewanella oneidensis.

16 e a molecular pathway for H-NOX signaling in Shewanella oneidensis.

17 and even the strongly electrogenic organism, Shewanella oneidensis (25 muW/cm(2)).

18 Another channel, the CymA-Mtr pathway from Shewanella oneidensis(3), is controlled by an arsenite-r

19 orces that characterize interactions between Shewanella oneidensis (a dissimilatory metal-reducing ba

20 Shewanella oneidensis, a metal reducer and facultative a

21 species-specific function, were monitored in Shewanella oneidensis, a metal reducing bacterium, follo

22 e cloned and expressed the MsrBA enzyme from Shewanella oneidensis, a metal-reducing bacterium and fi

23 amic regulatory platform was established for Shewanella oneidensis, a prominent electrochemically act

24 Previous claims that Shewanella oneidensis also produce conductive pili have

25 enomic analysis of the cis-regulatory map of Shewanella oneidensis, an important model organism for b

26 ential Hsp90 client in the aquatic bacterium Shewanella oneidensis and (2) biosynthesis of the coliba

27 uter-membrane deca-heme cytochrome MtrC from Shewanella oneidensis and flavin mononucleotide (FMN in

28 In PIPES buffer at pH 7 with excess H(2), Shewanella oneidensis and Geobacter sulfurreducens both

29 e availability of whole genome sequences for Shewanella oneidensis and Geobacter sulfurreducens has p

30 Microbial (Shewanella oneidensis and Geobacter sulfurreducens) and

31 in Vibrio cholerae, Pseudomonas aeruginosa, Shewanella oneidensis and Methylomicrobium alcaliphilum,

32 In contrast, Shewanella oneidensis and Pseudomonas putida have high i

33 the acnD and prpF genes from two organisms, Shewanella oneidensis and Vibrio cholerae, and found tha

34 a global proteome extract from the bacteria Shewanella oneidensis, and mouse plasma, as well as (18)

35 ergy in DNA-protein interactions between the Shewanella oneidensis ArcA two-component transcription f

36 urface power density of 89.4 muW/cm(2) using Shewanella oneidensis as a model biocatalyst without any

37 we applied QENS to study water transport in Shewanella oneidensis at ambient (0.1 MPa) and high (200

38 bacteria, B. subtilis and the gram-negative Shewanella oneidensis, attesting to the biological relev

39 diffusion and rotational relaxation in live Shewanella oneidensis bacteria at pressures up to 500 MP

40 Shewanella oneidensis bacteria use an abiotic reaction t

41 ive MFC-based biosensor enabled by enhancing Shewanella oneidensis biofilms on the electrode using an

42 -host-range plasmid was poorly maintained in Shewanella oneidensis, but rapidly adapted through mutat

43 Here we show that the facultative electrogen Shewanella oneidensis can control metal-catalysed living

44 The facultative anaerobe Shewanella oneidensis can reduce a number of insoluble e

45 ctropotentiometry showed that nitrite-loaded Shewanella oneidensis ccNiR is reduced in a concerted tw

46 While the nitrite-loaded active site of Shewanella oneidensis ccNiR(wt) could be 2-electron redu

47 genomic expression patterns were examined in Shewanella oneidensis cells exposed to elevated sodium c

48 lla pneumophila, Pseudomonas aeruginosa, and Shewanella oneidensis cells, we study flagellar motor di

49 f energy by Fe(III)-reducing species such as Shewanella oneidensis could potentially control the redo

50 Shewanella oneidensis cytochrome c nitrite reductase (so

51 we show that an H-NOX protein (SO2144) from Shewanella oneidensis directly interacts with the sensor

52 hanococcus jannaschii, Pyro coccus furiosus, Shewanella oneidensis, Escherichia coli and Deinococcus

53 the effect of an insertional mutation in the Shewanella oneidensis etrA (electron transport regulator

54 found in the unannotated genome sequence of Shewanella oneidensis (formerly S. putrefaciens) MR-1.

55 Both standard proteins and a complex Shewanella oneidensis global protein extract were digest

56 ics of the respiratorily versatile bacterium Shewanella oneidensis grown under aerobic, lactate-limit

57 In Shewanella oneidensis, H-NOX-mediated NO sensing increas

58 The bacterium Shewanella oneidensis has evolved a sophisticated electr

59 representative multiheme cytochrome STC from Shewanella oneidensis in aqueous solution.

60 crystal structures of the H-NOX protein from Shewanella oneidensis in the unligated, intermediate six

61 g bioenergy and bioremediation applications, Shewanella oneidensis, in minimal and rich media.

62 estris TDO and a related protein SO4414 from Shewanella oneidensis, including the structure at 1.6-A

63 Fe(II)-NO complex of the H-NOX protein from Shewanella oneidensis inhibits the autophosphorylation o

64 Shewanella oneidensis interacts with electrodes primaril

65 ulation of sigma(S) in the aquatic bacterium Shewanella oneidensis involves the CrsR-CrsA partner-swi

66 Shewanella oneidensis is a dissimilatory metal reducing

67 Shewanella oneidensis is a metal reducer that can use se

68 Shewanella oneidensis is a metal reducer that uses the c

69 YiiP from Shewanella oneidensis is a prokaryotic Zn(2+)/H(+) antip

70 Shewanella oneidensis is an important model organism for

71 Shewanella oneidensis is an important model organism for

72 Shewanella oneidensis is known for its ability to respir

73 Shewanella oneidensis is used as a model organism.

74 of the Fe(III)-reducing facultative anaerobe Shewanella oneidensis manipulated under controlled labor

75 e charge transfer between a CdSe QD film and Shewanella oneidensis microbes.

76 alysis of the HexR regulatory network in the Shewanella oneidensis model system.

77 fied a conserved chromosomal gene cluster in Shewanella oneidensis MR-1 (locus tag: SO_1522-SO_1518)

78 xperiment) and with the Fe reducing bacteria Shewanella oneidensis MR-1 (microbially amended experime

79 nt chromium (Cr(VI)) were investigated using Shewanella oneidensis MR-1 (MR-1) as a biocatalyst and p

80 coli (E. coli) and an electrogenic bacterium Shewanella oneidensis MR-1 (S. oneidensis).

81 ional analysis of the cold shock response of Shewanella oneidensis MR-1 after a temperature downshift

82 PCR primers specific to individual ORFs from Shewanella oneidensis MR-1 and Deinococcus radiodurans R

83 physical barrier, the Gram-negative bacteria Shewanella oneidensis MR-1 and Geobacter sulfurreducens

84 n extracellular electron transfer pathway of Shewanella oneidensis MR-1 and Gloeobacter rhodopsin (GR

85 AuNP samples was evaluated for the bacterium Shewanella oneidensis MR-1 and is quantitatively correla

86 mical techniques to probe intact biofilms of Shewanella oneidensis MR-1 and Shewanella sp. MR-4 grown

87 r to characterize electron transport between Shewanella oneidensis MR-1 and the metal oxide birnessit

88 mutagenesis in the metal-reducing bacterium Shewanella oneidensis MR-1 and the pathogenic yeast Cand

89 duced via the reduction of U(VI) (400 uM) by Shewanella oneidensis MR-1 and was subsequently mobilize

90 the presence of the iron reducing bacterium Shewanella oneidensis MR-1 are investigated under contro

91 ed the reduction of six-line ferrihydrite by Shewanella oneidensis MR-1 as a model system to demonstr

92 ntration produced by metal-reducing bacteria Shewanella oneidensis MR-1 as a result of organic fuel o

93 metabolic responses of metabolically active Shewanella oneidensis MR-1 biofilms to U(VI) (uranyl, UO

94 We found that in 12-hour-old Shewanella oneidensis MR-1 biofilms, a reduction in cell

95 ed that detachment of cells from biofilms of Shewanella oneidensis MR-1 can be induced by arresting t

96 me cytochromes, the metal-reducing bacterium Shewanella oneidensis MR-1 can perform extracellular ele

97 In this paper, population-level taxis of Shewanella oneidensis MR-1 cells in the presence of a ra

98 enous method to increase power output from a Shewanella oneidensis MR-1 containing MFC by adding calc

99 kout collection of the electroactive microbe Shewanella oneidensis MR-1 containing representatives fo

100 Shewanella oneidensis MR-1 contains a gene encoding a pu

101 Shewanella oneidensis MR-1 exhibits diverse metal ion-re

102 Shewanella oneidensis MR-1 expresses two distinct types

103 echniques to investigate binding between the Shewanella oneidensis MR-1 extracellular electron transf

104 Anaerobic cultures of Shewanella oneidensis MR-1 grown with nitrate as the sol

105 lability of the complete genome sequence for Shewanella oneidensis MR-1 has permitted a comprehensive

106 The tetraheme c-type cytochrome, CymA, from Shewanella oneidensis MR-1 has previously been shown to

107 The decaheme cytochrome MtrC from Shewanella oneidensis MR-1 immobilized on an ITO electro

108 lectron transport chain of the DIR bacterium Shewanella oneidensis MR-1 in Escherichia coli, we showe

109 ure of the small tetraheme cytochrome c from Shewanella oneidensis MR-1 in two crystal forms and two

110 the extracellular electron transfer chain of Shewanella oneidensis MR-1 into the model microbe Escher

111 Shewanella oneidensis MR-1 is a facultative Fe(III)- and

112 Shewanella oneidensis MR-1 is a facultatively anaerobic

113 Shewanella oneidensis MR-1 is an invaluable host for the

114 We previously reported that Shewanella oneidensis MR-1 is highly sensitive to UVC (2

115 (IR) dose that yields 20% survival (D20) of Shewanella oneidensis MR-1 is lower by factors of 20 and

116 Shewanella oneidensis MR-1 is purported to express outer

117 Shewanella oneidensis MR-1 is quickly becoming a synthet

118 t the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1 lacks chemotactic responses t

119 Expression from the Shewanella oneidensis MR-1 nnrS gene promoter, cloned in

120 Shewanella oneidensis MR-1 possesses two different stato

121 Shewanella oneidensis MR-1 produced electrically conduct

122 In this system, Shewanella oneidensis MR-1 provides electrons to a CdSe

123 Metal-reducing microorganisms such as Shewanella oneidensis MR-1 reduce highly soluble species

124 determined that graphene oxide reduction by Shewanella oneidensis MR-1 requires the Mtr respiratory

125 Shewanella oneidensis MR-1 sequentially utilizes lactate

126 cally connect a three-dimensional network of Shewanella oneidensis MR-1 to a gold electrode, thereby

127 whole-genome analyses of DNA methylation in Shewanella oneidensis MR-1 to examine its possible role

128 The molecular response of Shewanella oneidensis MR-1 to variations in extracellula

129 iron) and the common metal-reducing microbe Shewanella oneidensis MR-1 under several endmember condi

130 t use FNR to regulate anaerobic respiration, Shewanella oneidensis MR-1 uses the cyclic AMP receptor

131 nder anaerobic or oxygen-limited conditions, Shewanella oneidensis MR-1 uses the serine-isocitrate ly

132 The gammaproteobacterium Shewanella oneidensis MR-1 utilizes a complex electron t

133 Shewanella oneidensis MR-1 was used as a model bacterial

134 s extracted from the periplasmic fraction of Shewanella oneidensis MR-1 were further identified using

135 Here, we report autotrophic growth of Shewanella oneidensis MR-1 with photoelectrons provided

136 the toxicity of AgNPs to a bacterial model (Shewanella oneidensis MR-1) decreases most significantly

137 Shewanella oneidensis MR-1, a gammaproteobacterium with

138 Using Shewanella oneidensis MR-1, an environmentally versatile

139 trometry (MS/MS) to annotate the proteome of Shewanella oneidensis MR-1, an important microbe for bio

140 his study, we used a model organism in MFCs, Shewanella oneidensis MR-1, and (13)C pathway analysis t

141 ssimilatory metal-reducing bacteria, such as Shewanella oneidensis MR-1, as model organisms.

142 echnique, we investigated single colonies of Shewanella oneidensis MR-1, Bacillus subtilis 3610, and

143 networks in the dissimilatory metal reducer Shewanella oneidensis MR-1, global mRNA patterns were ex

144 In the real sample detection experiment of Shewanella oneidensis MR-1, it is verified that the sens

145 in with BAR domain-like activity, BdpA, from Shewanella oneidensis MR-1, known to produce redox-activ

146 (20 to 30 nm) of an electroactive bacterium, Shewanella oneidensis MR-1, was engineered to serve as a

147 F and OmcA from the metal-reducing bacterium Shewanella oneidensis MR-1, we show that electron transp

148 507, originally annotated as hypothetical in Shewanella oneidensis MR-1, were suggested to encode nov

149 vestigate extracellular electron transfer in Shewanella oneidensis MR-1, where an array of nanoholes

150 the dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, whose electron transport sys

151 f the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

152 f the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

153 y the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1.

154 ectrodes by expressing the cytochrome c from Shewanella oneidensis MR-1.

155 c foundation for carbon source metabolism in Shewanella oneidensis MR-1.

156 with MtrA, a decaheme c-type cytochrome from Shewanella oneidensis MR-1.

157 ynthesize PCA at an optimal level for EET in Shewanella oneidensis MR-1.

158 age a slice of a mouse liver and a colony of Shewanella oneidensis MR-1.

159 s phase U(VI) complexes for bacteria such as Shewanella oneidensis MR-1.

160 on of the known REE-biosorbing microorganism Shewanella oneidensis MR-1.

161 rCAB, a multiheme transmembrane protein from Shewanella oneidensis MR-1.

162 efficiency of our method via a case study of Shewanella oneidensis MR-1.

163 variations impact biocurrent generation from Shewanella oneidensis MR-1.

164 al membranes and the Gram-negative bacterium Shewanella oneidensis MR-1.

165 anowires in the model metal-reducing microbe Shewanella oneidensis MR-1.

166 l modeling with bioreactor experiments using Shewanella oneidensis MR-1.

167 an existing genome-scale metabolic model of Shewanella oneidensis MR-1.

168 d biogenic and abiogenic Fe(III) minerals by Shewanella oneidensis MR-1.

169 rrays constructed with full length ORFs from Shewanella oneidensis, MR-1, were hybridized with genomi

170 Two well-known exoelectrogens, Shewanella oneidensis MR1 and Pseudomonas aeruginosa PA0

171 alyze the metabolite composition of streaked Shewanella oneidensis MR1 and Pseudomonas stutzeri RCH2

172 similar resources and manual annotations on Shewanella oneidensis MR1 genome.

173 VI) by the model Fe(III)-reducing bacterium, Shewanella oneidensis MR1, proceeds via a single electro

174 t Crp and Fnr sites, and expression from the Shewanella oneidensis nrfA control region cloned in E. c

175 nipulating the lipopolysaccharide content in Shewanella oneidensis outer membranes, we observed the e

176 tion of this method to the identification of Shewanella oneidensis peptides/proteins exhibiting diffe

177 fferent tryptic peptides from >2000 distinct Shewanella oneidensis proteins ( approximately 40% of th

178 0 unique peptides that covered 1443 distinct Shewanella oneidensis proteins from a 300-ng tryptic dig

179 When applied to a global tryptic digest of Shewanella oneidensis proteins, an order-of-magnitude in

180 platform is demonstrated for the analysis of Shewanella oneidensis proteome, which has considerable i

181 lla pneumophila, Pseudomonas aeruginosa, and Shewanella oneidensis, providing the first views of inta

182 tching system of the aquatic Proteobacterium Shewanella oneidensis regulates post-translationally sig

183 Bioelectricity generation, by Shewanella oneidensis (S. oneidensis) MR-1, has become p

184 ntly supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizos

185 g three independently derived AMT databases (Shewanella oneidensis, Salmonella typhimurium, Yersinia

186 ganism-triggered polymerization system using Shewanella oneidensis-secreted flavins (as electron shut

187 s, including those from Nostoc sp. PCC 7120, Shewanella oneidensis, Shewanella woodyi, and Clostridiu

188 he ferrous-oxy complexes of human (hIDO) and Shewanella oneidensis (sIDO) indoleamine 2,3-dioxygenase

189 act of dimerization upon the activity of the Shewanella oneidensis (So) bCcP by the preparation of si

190 ent the first crystal structure of YcjX from Shewanella oneidensis solved at 1.9- angstrom resolution

191 the growth of the metal-respiring bacterium Shewanella oneidensis, specifically through the reductio

192 we provide genetic evidence that AQDS enters Shewanella oneidensis strain MR-1 and causes cell death

193 , we measured the rate of U(VI) reduction by Shewanella oneidensis strain MR-1 as function of NaHCO3

194 Shewanella oneidensis strain MR-1 can respire using carb

195 FF (Fl FFF) methodology to separate cells of Shewanella oneidensis strain MR-1 from exopolymers prese

196 The gamma-proteobacterium Shewanella oneidensis strain MR-1 is a metabolically ver

197 The Mtr respiratory pathway of Shewanella oneidensis strain MR-1 is required to effecti

198 Shewanella oneidensis strain MR-1 is well known for its

199 Here, we identify two gene clusters in Shewanella oneidensis strain MR-1 that each contain homo

200 Shewanella oneidensis strain MR-1 utilizes soluble and i

201 of hydrogenotrophic iron-reducing bacteria (Shewanella oneidensis strain MR-1) on the corrosion rate

202 Here, we show that Shewanella oneidensis strain MR-1, a nonfermentative, fa

203 he non-arsenate-respiring Shewanella species Shewanella oneidensis strain MR-1, has pleiotropic effec

204 Compared to a previous whole-cell study with Shewanella oneidensis strain MR-1, our findings suggest

205 ated substrates are encoded in the genome of Shewanella oneidensis strain MR-1.

206 ry metal reducing bacteria which include the Shewanella oneidensis strain MR-1.

207 n in the Gram negative gamma-proteobacterium Shewanella oneidensis strain MR-1.

208 rved physiological and metabolic activity of Shewanella oneidensis strain MR1 and Escherichia coli st

209 containing the model electroactive bacterium Shewanella oneidensis that enable the transduction of bi

210 of conductive pili, we designed a strain of Shewanella oneidensis that heterologously expressed abun

211 by fibers derived from a distant homolog in Shewanella oneidensis that shares less than 30% identity

212 In this system, EET flux from Shewanella oneidensis to a copper catalyst controls hydr

213 Performance was evaluated using a Shewanella oneidensis tryptic digest, and approximately

214 a tagged alpha-subunit of RNA polymerase in Shewanella oneidensis under controlled growth conditions

215 nent of the metal reduction (Mtr) pathway of Shewanella oneidensis under the control of an arsenic-se

216 ke in the nonmethylating facultative aerobe, Shewanella oneidensis, under both anaerobic and aerobic

217 The mineral-respiring bacterium Shewanella oneidensis uses a protein complex, MtrCAB, co

218 imilar, concerted two-electron transfer from Shewanella oneidensis via flavin mediators.

219 The crystal structure of SO1698 protein from Shewanella oneidensis was determined by a SAD method and

220 n the decaheme extracellular MtrC protein of Shewanella oneidensis We observed rates of heme-to-heme

221 ided, site-directed mutagenesis of MadB from Shewanella oneidensis, we identified Asn45 on a conserve

222 ransformation experiments in the presence of Shewanella oneidensis were modeled with this exercise re

223 ranscriptomic studies to characterize Fur in Shewanella oneidensis, with regard to its roles in iron

224 resolution structure of a YiiP homolog from Shewanella oneidensis within a lipid bilayer in the abse