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1 T-DNA and ALC loci were not linked, as indicated by rand
2 T-DNA inactivation of both Tric proteins further resulte
3 T-DNA insertion lines for ZML2 and its homolog ZML1 demo
4 T-DNA insertion mutants (atg mutants) of these genes dis
5 T-DNA insertion mutants are a tool used widely in Arabid
6 T-DNA insertion mutants have been widely used to define
7 T-DNA insertion mutants of CIAF1 lack Complex I and the
8 T-DNA insertions in At3g50740 cause a sugar-insensitive
9 T-DNA insertions in the genes represented by some cDNAs
10 T-DNA insertions in UKL1 and UKL2 reduced transcript exp
11 T-DNA insertions were identified in four of the five Ara
12 T-DNA inserts are stable; no transgene rearrangements we
13 T-DNA knock-out mutants of At3g57630 showed a truncated
14 T-DNA knockout of AtcpFHy/PyrP1 did not affect the flavi
15 T-DNA/plant DNA junctions from these transformed rice an
18 id occur in plants homozygous for the dcl3-1 T-DNA insertion and was unaffected by loss of function o
20 o add to these resources we sequenced 21 165 T-DNA lines, 15 569 of which were produced in this study
21 HC-Pro transgenic Arabidopsis and the arf8-6 T-DNA insertion mutant showed little effect on the P1/HC
30 erance of an ERF74 overexpression line and a T-DNA insertion mutant using flow cytometry, transactiva
31 distachyon, we identified a line carrying a T-DNA insertion in one of the two eukaryotic initiation
33 grobacterium binary vector, we constructed a T-DNA that contains a CRISPR/Cas9 system using SpCas9 an
34 rk, Arabidopsis thaliana plants containing a T-DNA disruption of the bile acid sodium symporter BASS6
35 We found that single mutants containing a T-DNA in each of the five Arabidopsis CSLC genes had nor
38 Seedling growth was severely reduced in a T-DNA insertion mutant of ICE1, ice1-2, when grown on 1/
41 es underlying root growth variation; using a T-DNA line candidate approach, we identified one gene in
48 combinase was delivered on the Agrobacterium T-DNA injected at the axillary bud site, resulting in th
49 is is typically achieved using Agrobacterium T-DNA, biolistics or by stably integrating nuclease-enco
53 d polQ mutant Arabidopsis and rice, analyzed T-DNA/plant DNA junction sequences, and (for Arabidopsis
54 a putative function of AtVDACs, we analyzed T-DNA insertion lines in each of the corresponding genes
56 pressing the wild type version of bZIP16 and T-DNA insertion mutants for bZIP68 and GBF1 demonstrated
57 ng term transgene expression consistency and T-DNA insert stability can be achieved in sugarcane, sug
58 ng term transgene expression consistency and T-DNA insert stability can be achieved in sugarcane, sug
59 The discrimination between glu-5-hmC-DNA and T-DNA by DB-JBP1 is about 2-fold less, but enough for DB
61 eutrons (used for the induction of rfc4) and T-DNA (used for the induction of ife, which is not linke
63 ted T-DNA insertion events, we built another T-DNA with a promoterless hptII gene adjacent to the T-D
66 in the present study we isolated Arabidopsis T-DNA insertion knockout mutant lines for each of the ge
68 of the wild-type level in three Arabidopsis T-DNA insertion mutants (naa20-1, naa20-2, and naa25-1)
74 sion of AtSLD1 in Arabidopsis plants, AtSLD1 T-DNA mutants showed large reductions in Delta8 unsatura
77 tumefaciens requires the import of bacterial T-DNA and virulence proteins into the plant cell that ev
82 of the DUF579 family have been disrupted by T-DNA insertions contain less xylose in the secondary ce
83 nent), which on simultaneous inactivation by T-DNA insertion lines displayed a severely delayed and c
84 lt plant while knocking down miR408 level by T-DNA insertions or the artificial miRNA technique cause
91 light and plastid signals by characterizing T-DNA insertion alleles of genes that are regulated by l
96 gh double knockdown mutant plants containing T-DNA insertions in both genes are embryonic lethal, und
99 RFA complex in tobacco resulted in decreased T-DNA expression, as determined by infection with A. tum
101 ted T4SS in vitro, we show that Osa degrades T-DNA in the T-DNA-VirD2 complex before its translocatio
103 wth attenuation in plants of a transfer DNA (T-DNA) insertion mutant of WRKY70 (wrky70) suggest that
105 revealed that double-stranded transfer DNA (T-DNA) intermediates can serve as substrates by as yet u
106 ion transgenic lines or in the transfer-DNA (T-DNA) insertion mutant lbd29-1, enhanced SCW developmen
108 arious plants by delivering transferred DNA (T-DNA) and virulence proteins into host plant cells.
109 f Agrobacterium tumefaciens transferred DNA (T-DNA) into the plant genome is the last step required f
114 evidence suggests that double-stranded (ds) T-DNA, converted from T-strands, are potent substrates f
117 Here, we show that complex extrachromosomal T-DNA structures form in A. tumefaciens-infected plants
123 s for two additional rice varieties and four T-DNA tagged transformants from the Taiwan Rice Insertio
126 N. benthamiana and Arabidopsis thaliana GOX T-DNA insertion mutants are compromised for nonhost resi
130 ther multiple redundant pathways function in T-DNA integration, and/or that integration requires some
132 er we examine callose deposition patterns in T-DNA insertion mutants (cs7) of the Callose Synthase 7
135 ons of Arabidopsis thaliana sequence-indexed T-DNA insertion mutants are among the most important res
136 so developed inexpensive methods for INTACT, T-DNA insertion mapping, and profiling of the complete n
139 iguration and genomic position of integrated T-DNA molecules likely affect transgene expression, and
141 T-DNA mutants we observed were all intronic T-DNA mutants and the T-DNA fragments in both the trigge
142 demonstrate that the suppression of intronic T-DNA mutants is mediated by trans-interactions between
145 ucosinolate profile of an Arabidopsis ipmdh1 T-DNA knock-out mutant could be restored to wild-type le
146 f the host cell, Agrobacterium transfers its T-DNA--as a complex (T-complex) with the bacterial VirE2
147 tterns include illegitimate DNA end joining, T-DNA truncations, T-DNA repeats, binary vector sequence
148 ts failed to rescue the respective knockout (T-DNA insertion) mutants, indicating that pigment-bindin
153 ation of a new tomato (Solanum lycopersicum) T-DNA mutant allowed for the isolation of the CALCINEURI
154 Arabidopsis reference genome sequence to map T-DNA flanking sequence tags (FST) for over 325,000 T-DN
157 a CMP or Ubi promoter, were used to monitor T-DNA insert stability and consistency of transgene enco
158 d Arabidopsis GTG1 and GTG2 and isolated new T-DNA insertion alleles of GTG1 and GTG2 in both Wassile
164 ene network modeling and characterization of T-DNA mutants indicated that acyl-activating enzyme enco
165 s are present in a widely-used collection of T-DNA insertion lines, we analyzed 64 independent lines
168 ium strains transfer a single-strand form of T-DNA (T-strands) and Virulence (Vir) effector proteins
170 T-DNA right border such that integration of T-DNA into the targeted exon sequence in-frame with the
175 inhibited the transient expression level of T-DNA and only reduced T-DNA integration by 50% suggests
181 iews our current knowledge of the process of T-DNA integration and proposes ways in which this knowle
182 signaling, we examined ABA sensitivities of T-DNA mutants of a number of Arabidopsis thaliana DWD ge
185 m attachment to plant cells and transport of T-DNA to the nucleus have been identified, but the T-DNA
191 ted by complementing homozygous lethal OXA2b T-DNA insertional mutants with a C-terminally truncated
193 nd near the coding base of the template in P/T DNA complexes with Klenow fragment (KF) DNAP as the po
194 conformational changes in primer-template (P/T) DNA are involved in the selective incorporation of dN
200 t expression level of T-DNA and only reduced T-DNA integration by 50% suggests that double-stranded T
201 ter-trap transformation vector that requires T-DNA integration into the plant genome to activate a pr
205 alt stress-related genes with available SALK T-DNA mutagenesis lines for phenotypic screening and ide
206 el mutant screen, combining a confirmed SALK T-DNA insertion collection with traditional forward gene
207 of more than 3700 confirmed homozygous SALK T-DNA insertion lines for visible defects under prolonge
211 e used a reverse genetics approach to screen T-DNA insertion mutants corresponding to all 47 of the A
213 imental procedures for efficiently screening T-DNA lines for the presence of chromosomal abnormalitie
214 ophysical and structural studies of the 2-Se-T DNAs reveal that the bulky 2-Se atom with a weak hydro
215 lyses showed that four out of five sequenced T-DNA/gDNA junctions carry a single copy of full-length
218 Southern blot analyses indicated a single T-DNA insertion in the mutant, located on chromosome 10.
219 ith impaired pollen development and a single T-DNA insertion in the transcription factor gene bHLH142
220 pproximately 40% for Arabidopsis msr1 single T-DNA insertion mutants and by more than 50% for msr1 ms
221 lection, we phenotypically characterized six T-DNA lines with insertions in genes previously shown in
225 gration by 50% suggests that double-stranded T-DNA intermediates, as well as single-stranded T-DNA, p
226 of the T-complex include the single stranded T-DNA, bacterial virulence proteins (VirD2, VirE2, VirE3
228 NA intermediates, as well as single-stranded T-DNA, play significant roles in the integration process
229 opose that termini of linear double-stranded T-DNAs are recognized and repaired by the plant's DNA do
236 that these constructs could produce targeted T-DNA insertions with frequencies ranging between 4 and
237 SPR/Cas9 system to demonstrate that targeted T-DNA integration can be achieved in the rice genome.
243 rved were all intronic T-DNA mutants and the T-DNA fragments in both the trigger T-DNA as well as in
245 to the nucleus have been identified, but the T-DNA integration step during transformation is poorly u
247 racterization of a mutant that contained the T-DNA insertion in the promoter region of the TK1a gene.
250 the number of unique insertion sites in the T-DNA collection by 21 078, bringing the overall total t
251 ter-directed cytokinin oxidase 1 gene in the T-DNA insertion lines reduces the endogenous cytokinin l
253 vent, but certain structural features in the T-DNA mutants are needed in order for the suppression to
260 immediately flanking the right border of the T-DNA insertion, which encoded an uncharacterized Broad
262 e presence of a translocation, all 11 of the T-DNA lines showing an abnormal pollen phenotype were fo
267 our genetic mapping experiments was that the T-DNA junctions on the 5'- and 3'-sides of a targeted ge
269 induction of ife, which is not linked to the T-DNA present in the line) can result in the duplication
270 th a promoterless hptII gene adjacent to the T-DNA right border such that integration of T-DNA into t
272 ght, heat and aluminum stresses, whereas the T-DNA insertion mutant erf74 and the erf74;erf75 double
273 romosomal translocations associated with the T-DNA insertion site, but the prevalence of these rearra
275 results revealed that exon 5, along with the T-DNA, is removed in this mutant, resulting in a truncat
277 Here, we report characterization of three T-DNA insertional mutants of the gene encoding cytochrom
284 and the T-DNA fragments in both the trigger T-DNA as well as in the suppressed T-DNA shared stretche
285 gitimate DNA end joining, T-DNA truncations, T-DNA repeats, binary vector sequences, and other unknow
288 l the least complex transgenic loci have two T-DNA copies in an inverted repeat configuration, center
290 Compared to the segregation of uncoupled T-DNAs in conventionally produced progeny, the incorpora
295 the past decade, phenotypes identified with T-DNA-induced mutants have played a critical role in adv
298 DNAs (T-DNA), hairpin probes hybridized with T-DNAs to form a duplex DNA, and the ring of hairpin DNA