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1 TBP and TFB/TF(II)B are highly conserved in structure an
2 TBP binds several TATA-less promoters with apparent high
3 TBP binds to core promoter DNA, recognizing the TATA-box
4 TBP occurs in Archaea and eukaryotes, but TRF2 evolved p
5 TBP recruits condensin onto RNA polymerase III-transcrib
6 TBP-associated factor (TAF) family proteins, including T
7 prises the TATA-binding protein (TBP) and 13 TBP-associated factors (TAF1-13), which specifically int
8 sed of the TATA-binding protein (TBP) and 13 TBP-associated factors (TAFs)-assembles into a functiona
11 ity constants were determined for [UO2(NO3)2(TBP)2], [UO2(NO3)2(H2O)(TBP)2], and [UO2(NO3)2(TBP)3].
16 s), hydroxylated PBDEs (OH-PBDEs), and 2,4,6-TBP in order to study differences in body burden between
17 ethane (DBDPE), 2,4,6-tribromophenol (2,4,6-TBP), OH-PBDEs) and organochlorines (polychlorinated bip
19 analysis, 65 (76%) TBP patients and 21 (87%) TBP>30% patients were still alive; 27 (32%) and 11 (46%)
22 Mot1 dissociation of a stable, high affinity TBP-DNA interaction is surprisingly inefficient, suggest
23 loop sequences present in two high-affinity TBPs (K(D) values of 4.2 +/- 0.3 and 3.0 +/- 0.3 nm).
24 TBP* species to Ti(4+)-based SBUs to afford TBP(*+) ligands and Ti(3+) centers, thus propagating the
26 VDUP1 [vitamin D upregulated protein 1] and TBP-2 [thioredoxin binding protein 2]) was regulated by
30 TBP-DNA interaction is extremely dynamic and TBP from the archaeal organism Sulfolobus acidocaldarius
31 ely prior to LT was the primary endpoint and TBP measurements were repeated 10, 30, 90, 180, and 360
32 and Normfinder, UBC, RPLP0, HMBS, GUSB, and TBP are the most suitable endogenous control genes for b
35 ed to recombinant histone octamers, NF1, and TBP in complex with DNA, our method is highly specific f
36 expansions in other TFs (HOXA13, RUNX2, and TBP) were similarly found to alter their phase separatio
39 al initiation of TFIID (a complex of TBP and TBP-associated factors [TAFs])-dependent ribosomal prote
40 -a complex of TATA-binding protein (TBP) and TBP-associated factors (TAFs)-is a central component of
43 tored DNA bending by eukaryotic and archaeal TBPs in the absence and presence of TFB in real-time.
44 more limiting essential components, such as TBP and Mediator, create a competitive transcriptional e
45 in-based polymorphism (TBP) and a new assay, TBP light, have been optimized for the authentication of
47 epeat length (at ATXN1, ATXN2, ATXN3, ATXN7, TBP, ATN1, HTT, JPH3, AR, and DMPK) was assessed by sing
49 more comprehensive model of the DmSNAPc-Bdp1-TBP complex on the U6 promoter that includes nearly all
50 (II)B specifically stabilizes the fully bent TBP-promoter DNA complex and we identify this step as a
53 ors describe the crystal structure of a Brf2-TBP-Bdp1 complex bound to a DNA promoter and characteriz
54 re, we present a crystal structure of a Brf2-TBP-Bdp1 complex bound to DNA at 2.7 A resolution, integ
55 ve solved crystal structures of a human Brf2-TBP complex bound to natural promoters, obtaining a deta
56 n of alkylphenols (APs), 4-tert-butylphenol (TBP), 4-pentylphenol (PP), 4-hexylphenol (HP), 4-tert-oc
57 We identified a ternary complex formed by TBP and the histone fold (HF) domain-containing TFIID su
59 rp TSS selection, in contrast with canonical TBP/TFIID-driven TATA-less promoters that have broader T
62 Gli proteins and a transcription coactivator TBP-associated factor 9 (TAF9), and validated its functi
63 TFI genes are part of a densely connected TBP family-insensitive T-box-Otx2-Gsc interaction networ
66 days after LT (P < 0.0001) and, at 360 days, TBP had not increased significantly (IMN: 0.08 +/- 0.19
68 ne triphosphate (ATP) hydrolysis to displace TBP from DNA and various models for how this activity is
70 s work, the interaction of Mot1 with the DNA/TBP complex was investigated by single-pair Forster reso
73 ation approach and identified the Drosophila TBP (TATA-box-binding protein)-related factor 2 (TRF2) a
74 morphosis of the tubeworm Hydroides elegans, TBP biosynthesis genes had no effect under the condition
75 epigenetic complexes, including the elusive TBP-associated-factor complex as well as two distinct GC
79 n, but also transfers electrons from excited TBP* species to Ti(4+)-based SBUs to afford TBP(*+) liga
81 (a Fab fragment and the transcription factor TBP) with low nanomolar detection limits and no detectab
82 [TATA box binding protein-associated factor (TBP)] and third-trimester [Testis-expressed sequence 15
83 CTCF, RAD21, a general transcription factor (TBP) and activating chromatin marks are important determ
84 We demonstrate that TAF11/TAF13 competes for TBP binding with TATA-box DNA, and also with the N-termi
85 e of treatment was 4.7 (1.4-25.8) months for TBP patients and 7.6 (2.4-19.4) months for TBP>30% patie
93 cation of ChIP-nexus to four proteins--human TBP and Drosophila NFkB, Twist and Max--shows that it ou
94 ment and factor-binding analysis for Pol II, TBP, TAF1, and Sp1 to assess the effect genome replicati
96 able to distinguish between metallacycles in TBP (trigonal-bipyramidal) and SP (square-pyramidal) geo
98 quantify the impact of genetic variation in TBP and drug class variation targeting the ATP-binding r
99 associated with reduced H3 levels, increased TBP binding and tri-methylation of H3K4 and is independe
100 at loss of O-GlcNAcylation at T114 increases TBP binding to BTAF1 and directly impacts expression of
106 nd overexpression of MANF ameliorates mutant TBP-mediated Purkinje cell degeneration via protein kina
116 inding protein)-related factor TRF2, but not TBP, is required for transcription of the TCT-dependent
117 ts (i.e. key residues) led to the ability of TBP to acquire new interactions, resulting in an increas
118 ent property of variable binding affinity of TBP for different promoter sequences, competition betwee
119 Transcriptomic and metabolomic analyses of TBP(T114A) CRISPR/Cas9-edited cells showed that loss of
120 enome replication resulted in the binding of TBP, TAF1, and Pol II to previously silent late promoter
121 criptional initiation of TFIID (a complex of TBP and TBP-associated factors [TAFs])-dependent ribosom
124 ssed by depletion of TBP, while depletion of TBP in the presence of Kin28 has little effect on Taf1 o
125 in28 depletion is suppressed by depletion of TBP, while depletion of TBP in the presence of Kin28 has
128 ons as a molecular switch in the exchange of TBP-associated factor 7 (TAF7) for LEC to facilitate the
129 ved in targeting the TAF-independent form of TBP to the promoters of ribosomal protein genes for tran
131 ecruitment of TFIID (a TAF-dependent form of TBP) but not the TAF-independent form of TBP to the prom
133 hensive study of the evolutionary history of TBP and its interaction partners across all domains of l
139 mpared to baseline, a 0.7 +/- 0.2 kg loss of TBP was seen in both groups at 30 days after LT (P < 0.0
140 companied by reduced promoter occupancies of TBP, and diminished transcription; and Ino80 is enriched
142 vity is tuned to establish a dynamic pool of TBP without interfering with stable and functional TBP-c
146 reveal cooperation of negative regulation of TBP with specific chromatin regulators to inhibit intrag
147 r, how ATP hydrolysis facilitates removal of TBP from DNA is not well understood, and several models
148 0(3) to 10(5) copies/PCR, the sensitivity of TBP was 100% for all targets, with a combined specificit
150 We show that O-GlcNAcylation at T114 of TBP blocks its interaction with BTAF1, hence the formati
153 raction partners to bind the same surface on TBP (to either promote or disrupt transcription initiati
155 ATPase activity primes incorrectly oriented TBP for dissociation from DNA and additional Mot1 in sol
157 high-definition PCR (HDPCR) Tickborne Panel (TBP) assay (ChromaCode, Carlsbad, CA) for the detection
158 -definition PCR (HDPCR) tick-borne pathogen (TBP) panel using 379 retrospective, remnant whole-blood
160 mer dots (PDs) by doping tributyl phosphate (TBP) in a semiconducting polymer poly[9,9-dioctylfluoren
161 (aq)) concentration with tributyl phosphate (TBP) in dodecane was the focus of this microscale study
165 ESCs, the proteins bind to active and poised TBP-bound promoters along with promoters of polycomb-sil
166 printing through tubulin-based polymorphism (TBP) and a new assay, TBP light, have been optimized for
167 izing 5,10,15,20-tetra(p-benzoato)porphyrin (TBP) ligands, cationic W-TBP mediates PDT to release tum
171 rical simulations, a time-bandwidth product (TBP) exceeding the 'fundamental' limit of ordinary reson
172 volumab more than 6 weeks after progression (TBP group); and patients not treated beyond progression,
174 or residence time for TATA-binding protein (TBP) across the yeast genome from competition ChIP data.
175 TFIID comprises the TATA-binding protein (TBP) and 13 TBP-associated factors (TAF1-13), which spec
176 omplex composed of the TATA-binding protein (TBP) and 13 TBP-associated factors (TAFs)-assembles into
181 ditions identified TATA-Box Binding Protein (TBP) and Importin 8 (IPO8) to be stable in non-small cel
183 TFIID-a complex of TATA-binding protein (TBP) and TBP-associated factors (TAFs)-is a central comp
185 one copy of mutant TATA box binding protein (TBP) at different ages by tamoxifen-mediated Cre recombi
187 der the concept of TATA-box-binding protein (TBP) family proteins as "system factors" that each suppo
188 ATPase that can remove TATA-binding protein (TBP) from DNA using ATP hydrolysis and in so doing exert
189 on the thiamine periplasmic binding protein (TBP) from Escherichia coli for thiamine biorecognition a
190 , we show that the TATA box-binding protein (TBP) interacts with the Cnd2 kleisin subunit of condensi
192 l transcription factor TATA binding protein (TBP) is replaced by its paralogue, TBPL2 (TBP2 or TRF3),
194 anscription factor TATA-box binding protein (TBP) leads to increased RNA synthesis, which together wi
197 ed in yeast cells, the TATA-binding protein (TBP) typically displays rapid turnover at RNA polymerase
198 (TRF2) rather than the TATA-binding protein (TBP) was found to function in transcription of RP genes
200 the TFIID complex with TATA-binding protein (TBP), and PRO-seq experiments revealed widespread disrup
201 common factor, the TATA-box binding protein (TBP), is thought to serve as a platform to assemble pre-
202 the promoter DNA, TATA box-binding protein (TBP), transcription factor B (TFB), transcription factor
203 ot1p-NC2 regulators of TATA-binding protein (TBP), we detected synthetic genetic interactions indicat
204 iptional initiation of TATA-binding protein (TBP)-associated factor (TAF)-dependent ribosomal protein
214 ion 1) dissociates TATA box-binding protein (TBP):DNA complexes, offering a useful system to address
218 Here, we show that DmSNAPc-Bdp1 can recruit TBP to the U6 promoter, and we identify a region of Bdp1
220 ence demonstrates that TBP2 does not replace TBP during muscle differentiation, as previously propose
225 hese properties of human promoters with slow TBP turnover differ from those of yeast promoters with s
226 ergy of metallacyclobutane intermediates (SP/TBP isomers), whereas aryloxides with pendant ortho aryl
228 istent with the model that sequence-specific TBP-DNA contacts are not important at yeast TATA-less ge
231 etermine the architecture of the TAF11/TAF13/TBP complex, revealing TAF11/TAF13 interaction with the
232 e identified Huwe1 as an E3 ligase targeting TBP for K48-linked ubiquitination and proteasome-mediate
233 We identify a highly conserved C-terminal TBP-interaction domain (CTID) in TAF13, which is essenti
234 Br heavy atoms in 1,3,5,8-tetrabromopyrene (TBP), and the photoinduced electron transfer in a TBPCEx
236 l transcription factors (GTFs; TFIIA, TFIIB, TBP, TFIIE, TFIIF, and TFIIH) and escapes the promoter,
238 sly proposed, with limiting amounts of TFIID-TBP being required to promote muscle-specific gene expre
239 oved to be significantly more efficient than TBP and ExBox(+4) , confirming the importance of the new
244 Taken together, these results suggest that TBP-DNA affinity as well as other aspects of promoter se
247 study reveals that interactions between the TBP-binding module of SAGA and the spliceosomal ATPase P
249 onsists of a TATA sequence recognized by the TBP subunit of the Pol III basal transcription factor II
252 nt resolution, the final PPA and NPA for the TBP panel were 97.7% (95% confidence interval [CI], 95.2
254 de 3 to 4 adverse events were similar in the TBP and non-TBP groups (5 [6%] and 9 [4%], respectively)
257 geted testing, we identify components of the TBP-binding module of the Spt-Ada-Gcn5 Acetyltransferase
259 t state (T(1) , 1.89 eV) is localized on the TBP and is close in energy with the charge separated sta
261 perimental constraints limit our scheme, the TBP can be arbitrarily large, simply dictated by the fin
264 eractions and unbends DNA as compared to the TBP:DNA:NC2 state, suggesting that Mot1 primes TBP:NC2 d
265 d sufficient for in vitro transcription, the TBP-associated factor (TAF) subunits recognize downstrea
267 ion of transcription factor B (TFB) with the TBP-DNA complex is followed by the recruitment of the ri
270 Here we report the design of a new nMOF, Ti-TBP, composed of Ti-oxo chain secondary building units (
275 from drug-resistant tumors were sensitive to TBP when grown in vitro, but exhibited resistance when p
283 benzoato)porphyrin (TBP) ligands, cationic W-TBP mediates PDT to release tumor associated antigens an
284 ationic nanoscale metal-organic framework, W-TBP, is used to facilitate tumor antigen presentation by
285 s TATA-box-dependent core promoters, whereas TBP-related factor 2 (TRF2) activates TATA-less core pro
286 ining promoters, it has been unclear whether TBP sequence-specific DNA contacts are required for tran
289 In vitro, Mot1 forms a ternary complex with TBP and DNA and can use ATP hydrolysis to dissociate the
290 he N-terminal domain of Mot1 in complex with TBP, DNA, and the transcription regulator negative cofac
295 the eukaryotic OC, the TATA DNA region with TBP and TFB is positioned closer to the surface of the R
296 Monitoring patients at extreme risk with TBP and SDDI assisted with early diagnosis of primary me
297 Arabidopsis to a premature stop codon within TBP-ASSOCIATED FACTOR 4b (TAF4b), which encodes a subuni
298 in the model, we are able to estimate yeast TBP-chromatin residence times as short as 1.3 minutes, d
299 We generated a set of mutations in the yeast TBP DNA binding surface and found that most support grow