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1 TFE also decreased the level of solubility of the peptid
2 TFE and ammonium perfluoro-octanoate exposures were high
3 TFE appears to induce the fibrils by stabilizing a beta-
4 TFE concentrations matching an alpha-helical content of
5 TFE increased the alpha-helical contribution of wild-typ
6 TFE operates via allosteric and direct mechanisms.
7 TFE unfolds VlsE at low percentages but promotes the for
8 TFE-fusion renal cell carcinomas (TFE-fusion RCCs) are c
9 TFE-induced conformational changes in the monomer protei
11 Negative ion mode spray stability with 0.2% TFE is approximately 6x higher than for strictly aqueous
15 vation kinetics were conducted by reacting 2(TFE)-(13)C with 300-1000 psi of methane in single-crysta
16 n methanol (2(MeOD)) and trifluoroethanol (2(TFE)) adducts, with methanol binding preferentially (K(e
20 role in the mechanism of aggregation in 25% TFE, but also from mutations located in other regions.
21 propensity increases regularly from 0 to 25% TFE but levels off at higher TFE concentrations, which e
25 studies of both peptides in saturating (43%) TFE reveal stable alpha-helices from Gly500 to Lys522, b
27 the sample to give a solution containing 5% TFE, the fraction of partially unfolded monomeric protei
28 rate of disaggregation of protofibrils in 5% TFE result not only from mutations situated in the regio
29 gh-resolution structures obtained with 50:50 TFE/water revealed that all three analogs display two he
30 +) in the presence of the CTAB than in a 50% TFE solution (K(d) = 3.1 x 10(-4) M in CTAB and 2.3 x 10
35 t thermal denaturation of the peptide in 50% TFE containing 1 mM Zn(2+) was associated with both enth
46 ween spin labels located at i and i + 4 in a TFE/H(2)O mixture or a POPC bilayer is indicative of an
47 B(1)(T377-E416) peptide reconstituted into a TFE/H(2)O mixture or a POPC or DMPC bilayer were estimat
49 ghest helix propensity at 0 degrees C in all TFE concentrations, it is lower than Leu, Ile, and Val a
53 nt (kH) were measured on going from MeOH and TFE to isooctane (kH(isooctane)/kH(MeOH) = 5-12; kH(isoo
54 rillization kinetics depended on peptide and TFE concentrations, and had a nucleation step followed b
56 he higher reaction rates observed in TFA and TFE compared with CH2Cl2 arise from stabilization of the
60 entification of the beta-subunit of archaeal TFE enabled us to reconstruct the evolutionary history o
64 we introduce (19)F, in this case from bound TFE, as a new probe for the binding of small molecules t
65 The (19)F and (2)H ENDOR spectra of bound TFE together with (1,2)H ENDOR spectra of bound ethanol
70 so give curves of helix formation induced by TFE at constant temperature, and the properties of these
71 e slow structural change of Con A induced by TFE provides a useful model system for study of protein
72 ic disorder that is substantially reduced by TFE, but a significant gradient in dynamics is observed,
74 cular hydrogen bonds are not strengthened by TFE and that amide hydrogen bonds in the transition stat
76 lkene difluorocyclopropanation and competing TFE/c-C(3)F(6)/homologous perfluoroanion generation, (13
77 of thermal unfolding curves in concentrated TFE solutions results from the decrease of the enthalpy
79 The CFC-113 degradation intermediates CTFE, TFE, and cis-DFE did not inhibit TCE dechlorination by D
80 f a transcription activator, here designated TFE, that may be universally present in the Archaea.
83 tion factor B (TFB), transcription factor E (TFE) and the 12-subunit RNA polymerase (RNAP) from Metha
85 anisms of the basal transcription factors E (TFE) and Spt4/5 through conformational constraints has r
86 lculations indicate that the solvent, either TFE or HFIP, can stabilize the transition state through
87 ive to backbone fluctuations and that either TFE or calcium binding stabilizes the secondary structur
88 ) working electrodes: a thin-film electrode (TFE), a screen-printed electrode (SPE), and a microarray
91 nd also subunit E and a transcription factor TFE that co-purifies with RNAP from wild-type cells, but
92 ctions with the general transcription factor TFE, as well as with the transcriptional activator Ptr2.
93 nated alcohol varied from 53:47 to 87:13 for TFE, 60:40 to 92:8 for HFP, and 52:48 to 73:27 for PFTB.
94 emained unchanged ( approximately 40:60) for TFE and for PFTB over the range of 25-250 molar equiv.
95 xposure matrix (1950-2002) was developed for TFE and ammonium perfluoro-octanoate, a chemical used in
96 such a term greatly improves the fitting for TFE, MeCN/H(2)O 2:1, and MeOH but at the expense of that
97 rmylphenylalanine trifluoroethyl ester (fPhe-TFE) represents an improvement over earlier model reacti
98 ncatalyzed reaction of glycinamide with fPhe-TFE proceeds with a second-order rate constant of 3 x 10
99 he helix-forming properties of peptides from TFE/H2O mixtures (TFE = 2,2, 2-trifluoroethanol) back to
103 y from 0 to 25% TFE but levels off at higher TFE concentrations, which explains why the extent of hel
109 MR studies performed on elbow and elbow-A in TFE indicate that the helical structure is confined to t
111 clude that initiation of EGFP aggregation in TFE likely involves overcoming of multiple protective fa
113 water, but Ser2 affects the conformation in TFE-rich solution in much the same way as Ser5-->Ala sub
115 lical structures in the peptide fragments in TFE was correlated with the observation of turn and/or h
116 gment with the highest degree of helicity in TFE corresponded with the single (alpha-helix in native
119 mpound, salicylic acid, has been measured in TFE/H2O mixtures from the pKa difference between salicyl
125 e peptides show an increase in beta-sheet in TFE, a known inducer of alpha-helices, relative to that
126 asing entropic costs of protein solvation in TFE-water mixtures may both cause the population of the
128 of hydrogen bond strength versus increasing TFE concentration matches both in shape and magnitude th
130 m with the natively disordered state at low [TFE] and with a highly alpha-helical conformation at hig
132 e microphthalmia/transcription factor E (MiT/TFE) family, are similarly regulated during mitophagy.
133 30 (hlh-30), the Caenorhabditis elegans MiT/TFE ortholog, to starvation followed by refeeding to und
134 expression of the transcription factors MiT/TFE and FOXH1, and that of lysosomal and autophagy genes
139 global metabolite profiling reveals that MiT/TFE-dependent autophagy-lysosome activation is specifica
140 es growth and suppresses activity of the MiT/TFE family of transcription factors that control biogene
142 enes, granting promoter occupancy to the MiT/TFE members, TFEB and TFE3, and/or the autophagy regulat
145 results illuminate a pathway leading to MiT/TFE transcription factor activation, distinct from starv
147 1 required for a direct interaction of MITF-TFE factors and E-box 2 for binding of the as yet uniden
149 e suggest that VMD2 is regulated by the MITF-TFE family through two E-boxes, with E-box 1 required fo
150 ctor EB (TFEB) and other members of the MiTF/TFE family of transcription factors through association
152 roperties of peptides from TFE/H2O mixtures (TFE = 2,2, 2-trifluoroethanol) back to water, the therma
155 ter-directed transcription in the absence of TFE, which alleviates this effect by displacing Spt4/5 f
159 brium CD results show that, upon addition of TFE, low-concentration Con A transforms to a highly alph
165 In the presence of low concentrations of TFE, fibril formation is observed in Abeta samples at na
167 TFE) followed by reductive defluorination of TFE to cis-1,2-difluoroethene (cis-DFE) as an end produc
169 mine whether the helix-stabilizing effect of TFE arises from strengthening the hydrogen bonds in the
173 o the DEs (1 or 2) in over 25 molar equiv of TFE occurred highly stereoselectively to afford only cis
174 r, we report the IR spectra as a function of TFE concentration for an alanine-rich peptide based on t
175 s to reconstruct the evolutionary history of TFE/TFIIE-like factors, which is characterised by winged
176 es specifically on the homopolymerization of TFE (the starting point for all fluoropolymer industries
177 ysical studies have revealed the position of TFE/TFIIE within the pre-initiation complex (PIC) and il
178 ion of 2D NMR experiments in the presence of TFE or DPC micelles, complete 1H NMR assignments of the
181 D) to analyze the CD data in the presence of TFE, by fully assigning the unbound IA(3) protein by NMR
182 (3) become more dispersed in the presence of TFE, indicating that the protein undergoes an unstructur
185 iscussion on the synthesis and production of TFE (both at industrial and laboratory scales), includin
188 a linear dependence of ln <w> and DeltaH on TFE molarity can be used to extrapolate the results from
191 ere measured between 0 and 50 volume percent TFE and were fitted to the modified Lifson-Roig theory.
192 arrows the range of uncertainty on potential TFE carcinogenicity but cannot conclusively confirm or r
195 , methanol, and dimethyl ether by [(N-N)PtMe(TFE-d(3))](+) ((N-N) = ArN=C(Me)-C(Me)=NAr; Ar = 3,5-di-
203 uoroethylene (CTFE) and tetrafluoroethylene (TFE) were determined in the temperature range 240-340 de
204 e homopolymerization of tetrafluoroethylene (TFE), detailing the TFE homopolymerization process and t
207 s, is important in promoter opening and that TFE can compensate for defects in the N terminus through
210 uncation mutant alphaS1-102, indicating that TFE-induced structural transitions involve the N terminu
212 Several recent papers have proposed that TFE acts by selectively desolvating the peptide backbone
215 g site with few intermolecular contacts, the TFE-inducible alphaB motif is deeply engaged in a hydrop
216 of tetrafluoroethylene (TFE), detailing the TFE homopolymerization process and the resulting chemica
218 ensive secondary structure is present in the TFE-denatured state but not in the protein denatured in
219 f dark respiration (Rd ) was elevated in the TFE-treated forest trees relative to the control by 28.2
222 ) to elucidate both the main features of the TFE-driven transition and the residue-level deviations f
223 ly helical intermediate is on-pathway to the TFE-induced formation of both the highly helical monomer
224 TFE fibrils is strongly correlated with the TFE-induced formation of a monomeric, partly helical int
225 tates upon association with membranes, these TFE-induced conformations imply relevant pathways for me
226 We find that efficient production of these TFE fibrils is strongly correlated with the TFE-induced
234 nding of ethanol and 1,1,1-trifluoroethanol (TFE) to both the H(mv) and H(ox) forms of soluble methan
235 egation in 25% (v/v) 2,2,2 trifluoroethanol (TFE) are different from those that promote disaggregatio
238 ow concentrations of 2,2,2-trifluoroethanol (TFE) convert predominately unstructured Abeta monomers i
239 yrrolidone) (PVP) in 2,2,2-trifluoroethanol (TFE) for the generation of PVP/TFE pockets on the surfac
240 formed in 60% (v/v) 2,2,2-trifluoroethanol (TFE) has been studied using hydrogen exchange pulse labe
241 solutions containing 2,2,2-trifluoroethanol (TFE) have shown that the formation of structural interme
246 in water and in 23% 2,2,2-trifluoroethanol (TFE) shows that the individual residue cross peaks of IA
248 n in the presence of 2,2,2-trifluoroethanol (TFE), a solvent known to stabilize hydrogen bonds within
249 osolvents, including 2,2,2-trifluoroethanol (TFE), on the thermodynamics and kinetics of folding of t
253 solvent system (40% 2,2,2-Trifluoroethanol (TFE)/water), which gave the largest structural differenc
254 pha-helical content in 30% trifluoroethanol (TFE) or in dodecylphosphocholine (DPC) micelles, which m
256 ndary structure, while 40% trifluoroethanol (TFE) induces >90% helicity and is unperturbed by the spi
258 duced by dissolving in 50% trifluoroethanol (TFE) were monitored at neutral and low pH by far- and ne
260 n the fluorinated alcohols trifluoroethanol (TFE), hexafluoropropan-2-ol (HFP), and perfluoro-tert-bu
261 uoroisopropanol (HFIP) and trifluoroethanol (TFE), to activate the electron-deficient heterocyclic az
263 organic solvents, such as trifluoroethanol (TFE) and methanol (MeOH), indicating a lower propensity
266 lar dichroism (CD) in H2O, trifluoroethanol (TFE), and SDS micelles confirmed the importance of the a
270 as well as the ability of trifluoroethanol (TFE) and detergent systems to induce secondary structure
273 itions via the addition of trifluoroethanol (TFE), DMSO, DMF and acetone, uniform fiber-like nanopart
274 d in vitro, by addition of trifluoroethanol (TFE), into amyloid fibrils of the type observed in a ran
275 moderate concentrations of trifluoroethanol (TFE), or because of the appearance of a highly alpha-hel
282 the presence of 25% (v/v) trifluoroethanol (TFE) AcP undergoes partial unfolding and globular aggreg
284 acid chlorides in 97% w/w trifluoroethanol (TFE)-water spanning over 10 (9) in rate constant at 25 d
288 OH) and fluorinated (i.e., trifluoroethanol, TFE) alcohols on the secondary structure and thermodynam
289 tion of CFC-113 to CTFE and trifluoroethene (TFE) followed by reductive defluorination of TFE to cis-
291 shed new light on the mechanisms underlying TFE-fusion RCCs and suggest a possible therapeutic strat
292 n kinetic behavior upon addition of 5% (v/v) TFE indicates that it stabilizes the transition state to
293 ta (1-42), we started our studies in various TFE-water mixtures and found striking differences betwee
294 ns where the peptides are most folded (water/TFE, 5 degrees C), tau(ex) values for all residues in ea
295 oism and by 2D-NMR in the presence of water; TFE/water; SDS micelles; and in the presence of both neu
297 circular dichroism data to a model in which TFE-water mixtures are assumed to be ideal solutions, we
299 is latter intermediate at -78 degrees C with TFE occurs selectively at the vinyl CH(2) closer to the