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1 absence of a targeting signal other than the TM domain.
2 strates, however, as it stabilized the first TM domain.
3 teracts with SERCA1 at least in part via its TM domain.
4 -helix connected by a disordered loop to the TM domain.
5 stitute a Golgi-targeting signal or a second TM domain.
6 ough specific interactions with the receptor TM domain.
7 esent in ANAC017 just prior to the predicted TM domain.
8 ually strong interhelical interaction in the TM domain.
9 nd aromatic residues along the length of the TM domain.
10 ity connected to the periplasmic exit of the TM domain.
11 ng antibodies than peptides with a monomeric TM domain.
12 among their membrane-embedded alpha-helical TM domains.
13 he interstices between the outer ends of the TM domains.
14 tive orientation, including both soluble and TM domains.
15 t transmembrane (TM) domain and contains six TM domains.
16 eractions formed between TM3 and neighboring TM domains.
17 nique 44-amino acid proteins with randomized TM domains.
18 perfamily are encoded at least partly in the TM domains.
19 the pair of inner helices from the second 6-TM domains.
20 lation of RNF144A through its transmembrane (TM) domain.
21 channel-forming alpha-helical transmembrane (TM) domain.
22 and F-actin via a C-terminal transmembrane (TM) domain.
23 eins containing only a single transmembrane (TM) domain.
24 e of the envelope counterpart transmembrane (TM) domain.
25 ain a predicted alpha-helical transmembrane (TM) domain.
26 main (CD) following the third transmembrane (TM) domain.
27 tial contribution of the TatA transmembrane (TM) domain.
28 24% sequence identity for the transmembrane (TM) domain.
29 e nitrilase domain fused to a transmembrane (TM) domain.
30 presenilin enhancer 2 in the transmembrane (TM) domain.
31 conserved HxxxW motif in the transmembrane (TM) domain.
32 cally predicted to have 30-40 transmembrane (TM) domains.
33 of the recombinant lectin-like domain of TM-TM domain 1 (rTMD1)-in antiangiogenesis were investigate
35 mutant transporters, predicts transmembrane (TM) domains 1, 3, 6, and 8 comprise the 5-HT-binding poc
38 to interact with the alphaIIb transmembrane (TM) domain activate single alphaIIbbeta3 molecules in pl
40 ipid environments and can function as a real TM domain, although not as efficiently as the bona fide
42 formations of a peptide comprising the EphA2 TM domain and a portion of the intracellular juxtamembra
43 ules in platelets by binding to the alphaIIb TM domain and causing separation of the alphaIIbbeta3 TM
44 efore, understanding the extent to which the TM domain and ECL2 conformations are coupled is useful.
46 occurs when the JM domain is linked to FGFR3 TM domain and not simply anchored to the plasma membrane
47 identified a peptide that binds to the PTPRJ TM domain and represents the first example of an alloste
48 n important role for the self-associating L2 TM domain and the conserved GxxxG motifs in the transfer
49 sults suggest a mechanism involving both the TM domain and the DD of p45 to regulate p75-mediated sig
50 is of a MARCH9 fragment encompassing the two TM domains and extracellular connecting loop revealed th
51 horin A (GpA) contain a GxxxG motif in their TM domains and form a homodimer, but the association aff
52 of different factors (primary structures of TM domains and juxtamembrane regions, composition and ph
53 te the interaction of the beta3 and alphaIIb TM domains and maintain the inactive resting conformatio
54 on between the conformational changes of the TM domains and of the intracellular juxtamembrane domain
55 secretion, the molecular distinction between TM domains and signal peptides, and the propensity for h
60 t contain one of two possible transmembrane (TM) domain and flanking sequences that either restrict t
62 ox2/4) consisting of the Nox2 transmembrane (TM) domain and the Nox4 dehydrogenase (DH) domain showed
64 ypeptide that contains seven trans-membrane (TM) domains and other motifs that are characteristics of
66 allest separation between the transmembrane (TM) domains and the highest possible phosphorylation, a
67 ween this initial step and activation of the TM domain, and that activation and deactivation follow a
68 pid nanoparticles using natural and designed TM domains, and antibody affinity was measured using imm
69 extracellular (EC) domain, a transmembrane (TM) domain, and an intracellular domain that includes a
73 ceptor contacts within the extracellular and TM domains are critical for the establishment of the unl
74 t share the extracellular and transmembrane (TMD) domains, as well as an intracellular domain known a
76 complete fusion, the role of synaptobrevin's TM domain association in the fusion process remains poor
78 es in the conformation of the transmembrane (TM) domain, brought about by changes in interactions of
80 rongly indicate that the proto-oncogenic Neu TM domain can adopt multiple (at least two) oligomeric c
81 first time that class I viral fusion protein TM domains can self-associate as trimeric complexes in t
82 nthetic peptides derived from transmembrane (TM) domains can interact with a full-length GPCR, blocki
83 domain of the chimera with the glycophorin A TM domain causes intramembrane dimerization and conseque
84 re both two-helical motifs, whereas the KdpD TM domain comprises a four-helical bundle with shorter s
90 nker structure, dynamics, and resulting ecto-TM domain coupling of integrin alphaIIb in model constru
91 -TM domain transition and the degree of ecto-TM domain coupling represents an important parameter in
93 of construct C8 (a construct that contains a TM domain deletion of eight amino acids from the C termi
94 sment of dimerization heterogeneity of these TM domains demonstrated that 7 of them have a unique dim
96 ion at i, i+4 positions at the center of the TM domain dimer eliminates the barrier and stabilizes th
98 s intrinsic to the physical character of the TM domain dimer, with a significant energy barrier separ
100 ce motifs for RTK dimerization and about how TM domain dimerization in model systems relates to RTK a
101 volve more slowly than do EM domains, though TM domains display increased rate heterogeneity relative
102 tion of exogenous TM peptides may displace a TM domain, disrupting native TM-TM interactions and glob
104 adhering to immobilized ligand, the integrin TM domains do not form homo-oligomers, suggesting that i
106 Lipid intercalation between the separating TM domains during channel opening would be facilitated i
111 absence of SRP this structure is lost as the TM domain exits the tunnel; however in the presence of S
112 n cell membranes, they are limited to either TM domains expressed in an inverted orientation or captu
113 Sequence-Structure (GRoSS) alignment of the TM domains for all human GPCR sequences is sufficient to
114 reverse orientation, and are limited to only TM domains for proper membrane trafficking and integrati
116 how that the receptor complex transmembrane (TM) domains form an intimately associated eight-helix bu
117 s, which are coupled with the transmembrane (TM) domains forming the pathway for anion permeation.
118 iophysical methods, we find that the rat Neu TM domain forms strong oligomers and, similar to previou
120 ct three-dimensional atomic structure of the TM domains from sequences for a set of 23 nonhomologous
121 by replacing this domain with the F protein TM domains from two other paramyxoviruses, Sendai virus
122 A potential hydrogen-bonding role for a TM domain glutamine was also investigated, and it was fo
123 fect on the T3S process, indicating that the TM domain has no sequence-specific function in the assem
124 ated receptor tyrosine kinase transmembrane (TM) domains have been shown to form sequence-specific di
125 ins a V to E mutation at position 664 in the TM domain, have been analyzed to improve our understandi
126 ed variant without N-terminal transmembrane (TM) domain, hDelta29-3-ABHD6, as the most promising prot
128 eptide containing the Ostbeta transmembrane (TM) domain heterodimerized with Ostalpha, although the r
129 imal external region (MPER) connected to the TM domain: i.e., the missing parts of the EBOV GP2 struc
131 e canonical hydrophobic groove displaces the TM domain in a competitive manner, allowing BclXL to dis
132 sured the potential dimerization of the NS4A TM domain in a well-characterized two-hybrid TM protein
133 in and reveal a fundamental role of the NS4A TM domain in coordinating HCV RNA replication and virus
134 lecular dynamics simulations of the isolated TM domain in explicit lipid bilayers coupled to thermody
137 cute respiratory syndrome virus has only one TM domain in micelles, whereas the predicted beta-coil-b
138 as we observe that dimerization of the Neu* TM domain in the Escherichia coli inner membrane strongl
139 in transmembrane (TM) domains implicated the TM domain in the fusion process, but the structural and
140 mbrane (TM) regions revealed that the second TM domain in the proposed 4-TM model of VKOR does not fu
144 al evidence for the major role of the C2 and TM domains in oligomerization, underscoring synergy amon
145 ) and helped to elucidate the association of TM domains in the epidermal growth factor family of rece
146 copies of a Shaker-like six-transmembrane (6-TM) domain in each subunit and are ubiquitously expresse
147 copies of a Shaker-like six-transmembrane (6-TM) domain in each subunit and are ubiquitously expresse
148 l domains to their respective transmembrane (TM) domains in transmitting the conformational changes i
150 embly of the membrane occurred with the syb2 TM domain inserted, as expected from experimental data.
154 lizing antibodies can bind the MPER when the TM domain is a three-helix bundle and this presentation
157 p45 with the cysteine 257 of p75 within the TM domain is necessary for p45-p75 heterodimerization.
162 ligand pocket located in the transmembrane (TM) domain is occupied, ligand-specific conformational c
164 ane-proximal linker (LD), and transmembrane (TMD) domains is required and sufficient to trigger fusio
165 ecific sequences in the alpha-helical MARCH9 TM domains make crucial contributions to its ability to
167 antifying the effect of the pathogenic A391E TM domain mutation on the stability of the fibroblast gr
168 actant micelle possesses a "GG kink," in the TM domain near the dynamic hinge located at G37/G38.
169 e region at the interface between the EC and TM domains, near the interlobe groove of NCT, emerges as
171 es, our method can predict structures of the TM domain of beta-barrel membrane proteins of novel topo
173 ly, replacement of the YscD TM domain with a TM domain of dissimilar sequence had no effect on the T3
174 that equivalent F, D, and T residues in the TM domain of FcepsilonR1alpha markedly influence the bio
176 embly by replacing the entire first or third TM domain of HBsAg with the transmembrane domain of HIV
180 a domain-swapped trans fashion, whereby the TM domain of one monomer occupies the canonical hydropho
182 ed tryptophan-asparagine sequence within the TM domain of Ostbeta to alanines did not prevent cell su
184 relies on a conformational change within the TM domain of PhoQ induced by a perturbation in cell memb
185 Therefore, our data demonstrate that the TM domain of RNF144A has at least two independent roles,
187 erization motif G(18)X(3)AX(2)G(25) in the N-TM domain of SR-BI contributes substantially to the homo
188 the channel transmembrane (TM) domain to the TM domain of syntaxin 1A to trigger transmitter release.
189 lar, the role of tapasin binding to the core TM domain of TAP1 single chains is mysterious because th
190 infrared spectroscopy show that the isolated TM domain of the active W515K mutant has a helix tilt an
191 interaction of the beta3 TM domain with the TM domain of the alphav-subunit of the integrin alphavbe
192 gest that intersubunit crevices found in the TM domain of the ATP-bound crystal structure are not pre
196 sults show that the specific sequence of the TM domain of the NDV F protein is important for the conf
197 ai virus (SV) and measles virus (MV), or the TM domain of the unrelated glycoprotein (G) of vesicular
199 have identified critical residues within the TM domains of ABCG1 that are both essential for sterol t
201 ar interaction between the extracellular and TM domains of C99(15-55) is enhanced in the micelle envi
202 G380 and A391E mutations in dimerization of TM domains of FGFR3 and their consecutive contributions
203 on was utilized to demonstrate that isolated TM domains of Hendra virus F protein associate in a mono
204 G380R and A391E mutations on dimerization of TM domains of human fibroblast growth factor receptor 3
206 template had low sequence-similarity to the TM domains of the CNG channels, and to reconcile conflic
207 ved region adjacent to the last two putative TM domains of the protein, that when mutated, affects un
208 we report three backbone structures for the TM domains of the three classes of Escherichia coli hist
209 es with known structures: the transmembrane (TM) domain of a bacterial channel, and the cyclic nucleo
211 f the central residues of the transmembrane (TM) domain of M2 are significantly enhanced by Cu(II), a
212 hydrophobic match between the transmembrane (TM) domain of membrane proteins and the surrounding lipi
213 of specific sequences in the transmembrane (TM) domain of Newcastle disease virus (NDV) fusion (F) p
217 extra interactions in seven-transmembrane (7-TM) domain of Smo due to an additional 2-pyridylmethyl g
218 dentified in the N-terminal transmembrane (N-TM) domain of SR-BI a conserved glycine dimerization mot
219 g site is present in the core transmembrane (TM) domain of TAP1 and is used only by the unassembled s
221 However, replacement of the transmembrane (TM) domain of the chimera with the glycophorin A TM doma
222 ously, we have shown that the transmembrane (TM) domain of the F protein, separate from the rest of t
224 In this study, we align the transmembrane (TM) domains of all experimental GPCR structures to maxim
226 the entire extracellular and transmembrane (TM) domains of C99 needed for gamma-secretase processing
228 ragment encoding the last six transmembrane (TM) domains of PC1 and the C-terminal tail (QIF38), a se
230 the cytoplasmic tail (CT) and transmembrane (TM) domains of tetherin alone produced its characteristi
231 cated splice variant with six transmembrane (TM) domains of the mouse mu-opioid receptor gene, in enh
233 e approximately 3 kcal/mol energy barrier to TM domain opening and the approximately 2 kcal/mol energ
234 virus 5 F (PIV5 F) and either the MPER, the TM domain, or the cytoplasmic tail of the F proteins of
237 peptide with a trimeric, three-helix bundle TM domain recapitulates the binding profile of the nativ
240 alanine substitution in the first of its two TM domains rendered MARCH9 completely unable to alter th
243 analyses have indicated that transmembrane (TM) domain residues can affect folding or function of vi
244 such forces to the intravesicular end of the TM domain resulted in tilting motion of the TM domain th
245 specific residues and motifs within MARCH9's TM domains resulted in varying degrees of functional imp
246 as found, and analysis of the Hendra virus F TM domain revealed a heptad repeat leucine-isoleucine zi
247 s both functions contains the transmembrane (TM) domain (roughly residues 22-46) for the amantadine-s
248 In addition to the classic transmembrane (TM) domain, RXFP1 possesses a large extracellular domain
249 The single mutants had a small effect on TM domain separation and cell death, whereas the double
250 he double mutant significantly increased the TM domain separation and more than doubled the sensitivi
251 TM domain with a nondimerizing poly-Leu/Ala TM domain sequence also blocked pilus production but not
252 residue peptide having the IR transmembrane (TM) domain sequence activates IR, but not related growth
255 M2 ectodomain and residues 24-36 of the A/M2 TM domain show 85% amantadine/rimantadine sensitivity an
256 e free energy of association reveal that the TM domains show a significant affinity to self-associate
257 s and validated in cytokine receptors by the TM domain structure of the cytokine receptor common subu
258 To evaluate the role of the transmembrane (TM) domain, synthetic MPER-derived peptides were incorpo
261 ization and activation path for TpoR via its TM domain that is shared between the small-molecule agon
262 is studies identify critical residues in the TM domains that are important for ABCG1 to alter sterol
265 nilins are proteins with nine transmembrane (TM) domains that function as catalytic subunits of the g
266 partic acid residues in their transmembrane (TM) domains that mediate assembly, via interaction with
267 to previous observations for the human ErbB2 TM domain, the oncogenic mutation results in a reduced l
268 TM domain resulted in tilting motion of the TM domain through the membrane with an activation energy
269 equences corresponding to D1R transmembrane (TM) domains TM5 and TM6, which also selectively modified
270 ail (CT) domain or its CT and transmembrane (TM) domains (TMCT) with counterparts from BPIV3 F, with
271 several lines of evidence indicate that the TM domain (TMD) of the receptor plays a central role.
272 halves of P-gp each contain a transmembrane (TM) domain (TMD) with 6 TM segments followed by a nucleo
274 Drug-binding sites in the transmembrane (TM) domains (TMDs) are connected to the nucleotide-bindi
275 constructs containing immunotags before the TM domain to assess membrane insertion using proteinase
276 ization assay, we show a propensity for this TM domain to self-associate in a GxxxG-dependent manner.
278 lar binding of its C-terminal transmembrane (TM) domain to the canonical hydrophobic groove in a doma
279 s propagated from the channel transmembrane (TM) domain to the TM domain of syntaxin 1A to trigger tr
280 unction, to result in loss of transmembrane (TM) domain, to affect NCSTN substrate recruitment sites,
281 is a conserved uncoupling motif of the ecto-TM domain transition and the degree of ecto-TM domain co
282 o probe the importance of the closed-to-open TM domain transition in the overall energetics of recept
283 iganded dimeric state of FGFR3 by its JM and TM domains via a mechanism that is distinctly different
287 while mutant proteins with the VSV G protein TM domain were less efficiently expressed on cell surfac
288 Mutant proteins with the SV or MV F protein TM domains were expressed, transported to cell surfaces,
289 f pore-lining inner helices from the first 6-TM domains, whereas membrane potential only activates th
290 (15)N chemical shifts of 29 residues of the TM domain, which yielded backbone (phi, psi) torsion ang
291 ogous copies of a six-transmembrane-helix (6-TM) domain, which has no sequence homology to the canoni
292 but because of the unembedded transmembrane (TM) domain, which serves as a dose-dependent degradation
295 However, structural studies involving the TM domain with or without the amphipathic helix differed
296 ects of the V(664)E mutation in the isolated TM domain with respect to protein-protein and protein-li
297 rather mediates the interaction of the beta3 TM domain with the TM domain of the alphav-subunit of th
298 --> Leu substitutions) or by replacing the N-TM domain with those from other CD36 superfamily members
300 it is not clear whether studies of isolated TM domains yield knowledge that is relevant to full-leng