ライフサイエンスコーパス: Thermotoga maritima

1 ion of P1 and P3P4 from the hyperthermophile Thermotoga maritima.

2 UvrB from Bacillus caldotenax and UvrC from Thermotoga maritima.

3 tal structure of most of the FliN protein of Thermotoga maritima.

4 sequence of the hyperthermophilic bacterium Thermotoga maritima.

5 structure of the C-terminal 70% of FliG from Thermotoga maritima.

6 d loop of the group I NifS-like protein from Thermotoga maritima.

7 opic labeling of a sigma70-like subunit from Thermotoga maritima.

8 o the proteome of the thermophilic bacterium Thermotoga maritima.

9 genome of Mycoplasma genitalium, and 23% in Thermotoga maritima.

10 the crystal structure to 2.2 A of MinC from Thermotoga maritima.

11 n was detected in the thermophilic bacterium Thermotoga maritima.

12 minators of this type, with the exception of Thermotoga maritima.

13 he genome of the hyperthermophilic bacterium Thermotoga maritima.

14 liG-C from the hyperthermophilic eubacterium Thermotoga maritima.

15 Here, we describe a UDG from the thermophile Thermotoga maritima.

16 sequences in the hyperthermophilic bacterium Thermotoga maritima.

17 gulator from the hyperthermophilic bacterium Thermotoga maritima.

18 he carbohydrate and nucleotide metabolism of Thermotoga maritima.

19 ay in the marine hyperthermophilic bacterium Thermotoga maritima.

20 ecombinant proteins from the model bacterium Thermotoga maritima.

21 in ThyX from the hyperthermophilic bacterium Thermotoga maritima.

22 protein in the hydrogen-producing bacterium Thermotoga maritima.

23 raction modes of chemoreceptor and CheW from Thermotoga maritima.

24 e sugar kinome in the thermophilic bacterium Thermotoga maritima.

25 otoga sp. strain RQ2 is probably a strain of Thermotoga maritima.

26 eW and the P4-P5 fragment of CheA, both from Thermotoga maritima.

27 exonuclease activity in endonuclease V from Thermotoga maritima.

28 amined a deflavinated FDP (deflavo-FDP) from Thermotoga maritima.

29 catalysis by DHFR from the hyperthermophile Thermotoga maritima.

30 e central metabolic network of the bacterium Thermotoga maritima.

31 5 angstrom (A), obtained for components from Thermotoga maritima.

32 we have characterized an ExoVII homolog from Thermotoga maritima.

33 ichia coli, and purified untagged MreB1 from Thermotoga maritima.

34 in vitro methylation of chemoreceptors from Thermotoga maritima, a hyperthermophile that has served

35 prokaryotes and eukaryotes, was cloned from Thermotoga maritima, a hyperthermophilic bacterium.

36 o acid sequence level to the enzyme found in Thermotoga maritima, a thermophilic eubacteria, and sugg

37 cture of an M42 aminopeptidase, TmPep1050 of Thermotoga maritima, along with the dodecamer structure.

38 me bacteria, including the hyperthermophiles Thermotoga maritima and Aquifex aeolicus.

39 Co(2+)-requiring alkaline phosphatases from Thermotoga maritima and Bacillus subtilis have a His and

40 Alkaline phosphatases from organisms such as Thermotoga maritima and Bacillus subtilis require cobalt

41 ochemical properties of a TF:S7 complex from Thermotoga maritima and determined its crystal structure

42 We have created a series of Thermotoga maritima and Escherichia coli pseudouridine 5

43 We expressed and purified MpgII from Thermotoga maritima and found that the enzyme releases b

44 d the crystal structure of the PanK-III from Thermotoga maritima and identified it as a member of the

45 Co-cultivation of the hyperthermophiles Thermotoga maritima and Methanococcus jannaschii resulte

46 ze and engineer TP-shell interactions in the Thermotoga maritima and Myxococcus xanthus encapsulin sy

47 eus, and two from the Gram-negative bacteria Thermotoga maritima and Pseudomonas aeruginosa.

48 ze the in situ cell envelope architecture of Thermotoga maritima and show that the toga is made of ex

49 have characterized the ECF transporters from Thermotoga maritima and Streptococcus thermophilus.

50 as inhibitors of a polytopic PGT (WecA from Thermotoga maritima) and a monotopic PGT (PglC from Camp

51 Bacillus subtilis, Sulfolobus tokodaii, and Thermotoga maritima) and two eukaryotic (Saccharomyces c

52 a-glycosidases from Sulfolobus solfataricus, Thermotoga maritima, and Caldocellum saccharolyticum.

53 P superfamilies against the entire genome of Thermotoga maritima, and make over a 100 new fold predic

54 ic organism, the hyperthermophilic bacterium Thermotoga maritima, and those of close homologs from me

55 r to the KH1 domain of the NusA protein from Thermotoga maritima, another cold-shock associated RNA-b

56 of HU from the hyperthermophilic eubacterium Thermotoga maritima are shown here to differ significant

57 rate-binding domains of HemK from E.coli and Thermotoga maritima are structurally similar, despite th

58 Using the hydrogenase maturase HydE from Thermotoga maritima as a template, we obtained several u

59 ion crystal structure of lysine bound to the Thermotoga maritima asd lysine riboswitch ligand-binding

60 ucible transcriptional repressor, HrcA, from Thermotoga maritima at 2.2A resolution.

61 of the PLP synthase complex (YaaD-YaaE) from Thermotoga maritima at 2.9 A resolution.

62 9 family proteins from a variety of sources (Thermotoga maritima, Bacillus subtilis, Acinetobacter ba

63 structure of the FliY catalytic domain from Thermotoga maritima bears strong resemblance to the midd

64 The open reading frame TM1643 of Thermotoga maritima belongs to a large family of protein

65 In Thermotoga maritima both candidate genes (in an original

66 ed to map conformational states of CorA from Thermotoga maritima by determining which residues suppor

67 -examined the completely sequenced genome of Thermotoga maritima by employing the combined use of the

68 haracterize the CheA-receptor interaction in Thermotoga maritima by NMR spectroscopy and validate the

69 f an enzyme of unknown activity, Tm0936 from Thermotoga maritima, by docking high-energy intermediate

70 We show here that the Cmr complex from Thermotoga maritima can cleave an ssRNA target that is c

71 owever, we show that both RimO and MiaB from Thermotoga maritima catalyze methyl transfer from SAM to

72 previously isolated by random sequencing of Thermotoga maritima cDNA clones.

73 The 2.6 A resolution crystal structure of Thermotoga maritima CheA (290-671) histidine kinase reve

74 cture of a soluble ternary complex formed by Thermotoga maritima CheA (TmCheA), CheW, and receptor si

75 investigate the two ATP-binding sites of the Thermotoga maritima CheA dimer (TmCheA) and the single s

76 The structure of Thermotoga maritima CheA domain P2 in complex with CheY

77 of nucleotide binding to the active site of Thermotoga maritima CheA was investigated using stopped-

78 ity of the phospho-accepting His (His-45) in Thermotoga maritima CheA.

79 thylation analyses utilizing S. enterica and Thermotoga maritima CheR proteins and MCPs indicate that

80 sed on a crystal structure of the homologous Thermotoga maritima class III RNR, showing its architect

81 rystal structures of a fragment of MetH from Thermotoga maritima comprising the domains that bind Hcy

82 ities, while the hyperthermophilic bacterium Thermotoga maritima contains only one, pyruvate ferredox

83 The copper transport ATPase from Thermotoga maritima (CopA) provides a useful system for

84 Thermotoga maritima CorA (TmCorA) is the only member of

85 The crystal structures of Thermotoga maritima CorA provide an excellent structural

86 The crystal structure of Thermotoga maritima CorA shows a homopentamer with two t

87 eolicus GyrA/ParC CTD with the GyrA CTD from Thermotoga maritima creates an enzyme that negatively su

88 Crystals of DAHPS from Thermotoga maritima (DAHPS(Tm)) were grown in the presen

89 glucose-6-phosphate dehydrogenase (Gpd) from Thermotoga maritima, demonstrated robust activity over a

90 scattering studies of thermostable CheA from Thermotoga maritima determine that the His-containing su

91 hile those of Mycobacterium tuberculosis and Thermotoga maritima did not.

92 ffector from the hyperthermophilic bacterium Thermotoga maritima discriminates between native and inv

93 ymerase derived from Thermus species Z05 and Thermotoga maritima DNA polymerases.

94 ed the 1.8-A resolution crystal structure of Thermotoga maritima DrrB, providing a second structure o

95 arrel domain from the thermophilic bacteria, Thermotoga maritima, enabled an NMR-based site-specific

96 e systematically designed 24 variants of the Thermotoga maritima encapsulin cage, featuring pores of

97 In the case of the Thermotoga maritima encapsulin, the decameric cargo prot

98 The gene buk2 from Thermotoga maritima encodes a member of the ASKHA (aceta

99 nserved residues D43, E89, D110, and H214 in Thermotoga maritima endonuclease V catalysis.

100 was performed in nine conserved positions of Thermotoga maritima endonuclease V to identify amino aci

101 t seven conserved motifs of the thermostable Thermotoga maritima endonuclease V to probe for residues

102 te of CspTm, a small cold-shock protein from Thermotoga maritima, engineered to contain a single tryp

103 Thermotoga maritima exo-beta-fructosidase (BfrA) secrete

104 , we showed that FMN-free diferrous FDP from Thermotoga maritima exposed to 1 equiv NO forms a stable

105 ors with a single enzyme 'model system', the Thermotoga maritima family 1 beta-glucosidase, TmGH1.

106 he hyperthermophilic and anaerobic bacterium Thermotoga maritima ferments a wide variety of carbohydr

107 interaction between the N-terminal domain of Thermotoga maritima FliG (FliG(N)) and peptides correspo

108 Furthermore, we show that Thermotoga maritima FliM and FliN form a 1:3 complex str

109 e (6PGDH) from a hyperthermophilic bacterium Thermotoga maritima from its natural coenzyme NADP(+) to

110 of peptide chain release factor 1 (RF1) from Thermotoga maritima (gi 4981173) at 2.65 Angstrom resolu

111 The crystal structures of Thermotoga maritima GTase and its complex with the inhib

112 lease V from the hyperthermophilic bacterium Thermotoga maritima has been cloned and expressed in Esc

113 -isopentenyladenosine of tRNA in E. coli and Thermotoga maritima, has been demonstrated to harbor two

114 HK853 and its response regulator RR468 from Thermotoga maritima, here we report a pH-mediated confor

115 Thermotoga maritima HpkA is a transmembrane histidine ki

116 at HU from the hyperthermophilic eubacterium Thermotoga maritima HU bends DNA and constrains negative

117 presents a 2.3-kb locus with similarity to a Thermotoga maritima hypothetical protein, while another

118 ty, we expressed the gyrase of the bacterium Thermotoga maritima in a naive archaeon Thermococcus kod

119 report three crystal structures of ThiI from Thermotoga maritima in complex with a truncated tRNA.

120 ion of a sensor HK, one from the thermophile Thermotoga maritima in complex with ADPbetaN at 1.9 A re

121 heterologously produced the NfnAB complex of Thermotoga maritima in Escherichia coli, provided kineti

122 ve solved the crystal structure of FtsA from Thermotoga maritima in the apo and ATP-bound form.

123 ed five different structures of FGAR-AT from Thermotoga maritima in the presence of substrates, a sub

124 production of the GH10 xylanase Xyl10B from Thermotoga maritima in transplastomic plants and demonst

125 chaeoglobus fulgidus, and from the bacterium Thermotoga maritima) into the E. coli expression vector

126 Thermotoga maritima is a marine hyperthermophilic microo

127 work, a structure of the PurLQS complex from Thermotoga maritima is described revealing a 2:1:1 stoic

128 Structural characterization of Thermotoga maritima IscU by CD and high resolution NMR y

129 In this study, we characterized LarE from Thermotoga maritima (LarE(Tm)) and show that it uses the

130 of the 174-nucleotide sensing domain of the Thermotoga maritima lysine riboswitch in the lysine-boun

131 Here we report that Thermotoga maritima MazG protein (Tm-MazG), the product

132 pe and C150/154/157A triple variant forms of Thermotoga maritima MiaB have revealed the presence of t

133 ts of seven distinct bisphosphonates against Thermotoga maritima mPPase to explore their mode of acti

134 dy the assembly and mechanical properties of Thermotoga maritima MreB in the presence of different nu

135 Here, we studied the assembly of Thermotoga maritima MreB triggered by ATP in vitro and c

136 A whole-genome alignment of Thermotoga maritima MSB8 and Thermotoga neapolitana NS-E

137 The 1,860,725-base-pair genome of Thermotoga maritima MSB8 contains 1,877 predicted coding

138 sequence of the hyperthermophilic bacterium Thermotoga maritima MSB8 presents evidence for lateral g

139 The hyperthermophilic bacterium Thermotoga maritima MSB8 was grown on a variety of carbo

140 , we explore these questions using the model Thermotoga maritima nanocompartment known to encapsulate

141 Molecular replacement with the Thermotoga maritima NifS model was used to determine pha

142 ng growth of the hyperthermophilic bacterium Thermotoga maritima on 14 monosaccharide and polysacchar

143 hemical studies demonstrate that TM1635 from Thermotoga maritima, originally annotated as a putative

144 tructure of a type III PanK, the enzyme from Thermotoga maritima (PanK(Tm)), solved at 2.0-A resoluti

145 ined, the crystal structure was reported for Thermotoga maritima PlsC, an enzyme in the same gene fam

146 The extremophile Thermotoga maritima possesses a remarkable array of carb

147 The hyperthermophilic eubacterium Thermotoga maritima possesses an operon encoding an Hsp7

148 Endonuclease V obtained from Thermotoga maritima preferentially cleaves purine mismat

149 Surprisingly, even Thermotoga maritima, previously considered to have only

150 n success, DXMS analysis was attempted on 24 Thermotoga maritima proteins with varying crystallizatio

151 C-terminal amphipathic helix in vitro using Thermotoga maritima proteins.

152 Here, we report the analysis of the Thermotoga maritima proteome, in which we compare the pr

153 The crystal structures of Thermotoga maritima Psi55S, and its complex with RNA, ha

154 les but later recolonized a hot environment (Thermotoga maritima) relied in their evolutionary strate

155 ith Lactobacillus casei, and 23 and 40% with Thermotoga maritima, respectively.

156 cture of this C-terminal domain of FliN from Thermotoga maritima revealed a saddle-shaped dimer forme

157 ure of the FliM middle domain (FliM(M)) from Thermotoga maritima reveals a pseudo-2-fold symmetric to

158 main (P1) from the chemotaxis kinase CheA of Thermotoga maritima reveals a remarkable degree of struc

159 at 3.85 A resolution of the RNA component of Thermotoga maritima ribonuclease P.

160 es (F17 and R89) are essential for efficient Thermotoga maritima RNase P activity.

161 We report the crystal structure of the Thermotoga maritima RNase P holoenzyme in complex with t

162 at the cytoplasmic helix-turn-helix motif of Thermotoga maritima RodZ directly interacts with monomer

163 The 1.6 A crystal structure of Thermotoga maritima RuvB together with five mutant struc

164 Unlike endonuclease V from Thermotoga maritima, Salmonella endonucleae V can only t

165 Here, we report a crystal structure of Thermotoga maritima SecA at 1.9 A resolution.

166 The recent crystal structure of the Thermotoga maritima SecA-SecYEG complex shows the ATPase

167 ur data support the in vivo relevance of the Thermotoga maritima SecA.SecYEG crystal structure that v

168 iety of contexts, including the structure of Thermotoga maritima sigmaA region 4 described herein.

169 itor binding to potently inhibited Sirt1 and Thermotoga maritima Sir2 and to moderately inhibited Sir

170 of the N and C-terminal globular domains of Thermotoga maritima SMC in Escherichia coli by replacing

171 The 2.17 A resolution crystal structure of a Thermotoga maritima soluble receptor (Tm14) reveals dist

172 sophile Escherichia coli and the thermophile Thermotoga maritima, subunit dissociation activates at t

173 occasionally found also in bacteria such as Thermotoga maritima that do not utilise a PEP-PTS system

174 f loop 2, which are analogous to residues in Thermotoga maritima that mediate cross-talk.

175 nate lyase from the thermophilic eubacterium Thermotoga maritima, the archaebacterial lyase contains

176 we report the structures of hTK1 and of the Thermotoga maritima thymidine kinase (TmTK) in complex w

177 tructures of ODP from Td and the thermophile Thermotoga maritima (Tm) in the Fe[III](2)-O(2) (2-), Zn

178 crystal structures of complexes between the Thermotoga maritima (Tm) NadA K219R/Y107F variant and (i

179 The Thermotoga maritima TM0065 gene codes for a protein (TM-

180 tm0322) from the hyperthermophilic bacterium Thermotoga maritima (TM0322).

181 Mechanistic studies of a FDTS from Thermotoga maritima (TM0449) are presented here.

182 he genome of the hyperthermophilic bacterium Thermotoga maritima, TM0504 encodes a putative signaling

183 ed three-dimensional structure of GK-II from Thermotoga maritima (TM1585; PDB code 2b8n) revealed a n

184 Thermotoga maritima (Tma) EndoV recognizes and primarily

185 rofolate reductase from the hyperthermophile Thermotoga maritima (TmDHFR) are presented.

186 rofolate reductase from the hyperthermophile Thermotoga maritima (TmDHFR) has been examined by enzyme

187 R) and the dimeric, thermophilic enzyme from Thermotoga maritima (TmDHFR).

188 al analysis of GH36 alpha-galactosidase from Thermotoga maritima (TmGalA).

189 o be a potent inhibitor (Ki = 8.2 nM) of the Thermotoga maritima TmGH1 beta-glucosidase.

190 otein from the hyperthermostable eubacterium Thermotoga maritima, TmHU as an efficient gene transfer

191 altodextrin periplasmic-binding protein from Thermotoga maritima (tmMBP) complexed with oligosacchari

192 dge gap, we have characterized the MetY from Thermotoga maritima (TmMetY).

193 N-utilizing substance A protein (NusA) from Thermotoga maritima (TmNusA), a protein involved in tran

194 ding by the EcfS subunit for riboflavin from Thermotoga maritima, TmRibU.

195 of the GDP complex of the YjeQ protein from Thermotoga maritima (TmYjeQ), a member of the YjeQ GTPas

196 olution to TrpB from Pyrococcus furiosus and Thermotoga maritima to generate a suite of catalysts for

197 The gene for the Thermotoga maritima Trk potassium transporter component

198 TruB apo enzyme, as well as the structure of Thermotoga maritima TruB in complex with RNA.

199 tform called OrthoRep, we rapidly evolve the Thermotoga maritima tryptophan synthase beta-subunit (Tm

200 In Thermotoga maritima, two PhoU homologues have been ident

201 287/288 from the hyperthermophilic bacterium Thermotoga maritima using all-atom molecular dynamics (M

202 conserved in simulations of the mPPases from Thermotoga maritima, Vigna radiata and Clostridium leptu

203 RNase III of the hyperthermophilic bacterium Thermotoga maritima was analyzed using purified recombin

204 synthase from the thermophilic microorganism Thermotoga maritima was cloned, and the enzyme was overe

205 protein from the hyperthermophilic bacterium Thermotoga maritima was determined at 1.2-A resolution b

206 Ribosome recycling factor (RRF) of Thermotoga maritima was expressed in Escherichia coli fr

207 Previously, Tm0936 from Thermotoga maritima was shown to catalyze the deaminatio

208 NagA from Thermotoga maritima was shown to require a single divale

209 domains from a hyperthermophilic bacterium, Thermotoga maritima, was cloned and expressed in Escheri

210 it of RNase P from a thermophilic bacterium, Thermotoga maritima, was overexpressed in and purified f

211 M0487 (a 102-residue alpha+beta protein from Thermotoga maritima), we predicted the complete, topolog

212 e conserved hypothetical protein TM0979 from Thermotoga maritima, we demonstrate the capabilities of

213 rototyping it using the simple microorganism Thermotoga maritima, we show our model accurately simula

214 atabolite-linked transcriptional networks in Thermotoga maritima, we used full-genome DNA microarray

215 mophilic eubacteria Thermus thermophilus and Thermotoga maritima were cloned, sequenced, and expresse

216 he heterodimeric ABC exporter TM287/288 from Thermotoga maritima, which contains a non-canonical ATP

217 f a larger fragment of the FliG protein from Thermotoga maritima, which encompasses the middle and C-

218 omes of several unusual organisms, including Thermotoga maritima, whose genome reveals extensive pote

219 ated interactions between FliM and FliG from Thermotoga maritima with X-ray crystallography and pulse

220 Thermotoga maritima XseA/B homologs TM1768 and TM1769 we