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1 sity (D), and joining (J) subgenic elements (V(D)J recombination).
2 which is required for rejoining DSBs during VDJ recombination.
3 atic hypermutation levels and in features of V(D)J recombination.
4 re, we aimed to study the role of XLF during V(D)J recombination.
5 igating how these dynamic mechanisms control V(D)J recombination.
6 double-strand breaks (DSBs) generated during V(D)J recombination.
7 teins participate in the DNA repair phase of V(D)J recombination.
8 tions, play a fundamental role in regulating V(D)J recombination.
9 rucial to quantitatively capture kinetics in V(D)J recombination.
10 te asymmetry important for the 12/23 rule of V(D)J recombination.
11 ucial for DNA double-strand break repair and V(D)J recombination.
12 A rearrangements in lymphoid cells, known as V(D)J recombination.
13 defect in DNA double-strand break repair and V(D)J recombination.
14 omplex that reflects the known 12/23 rule of V(D)J recombination.
15 ional levels to facilitate their assembly by V(D)J recombination.
16 epair of DNA double-strand breaks (DSBs) and V(D)J recombination.
17 g an unexpected role for RAG proteins beyond V(D)J recombination.
18 AG1) and RAG2 result in loss or reduction of V(D)J recombination.
19 y chain (IgH) gene locus prior to and during V(D)J recombination.
20 ect consequences of BCL11A/RAG modulation on V(D)J recombination.
21 lation of antigen receptor gene assembly via V(D)J recombination.
22 en receptor variable region gene segments by V(D)J recombination.
23 ased on lymphocyte Ag receptors generated by V(D)J recombination.
24 and breaks created by ionizing radiation and V(D)J recombination.
25 ted activation of germline transcription and V(D)J recombination.
26 cleavage activity, is required for efficient V(D)J recombination.
27 y impaired DNA damage responses or defective V(D)J recombination.
28 hich plays essential roles in DNA repair and V(D)J recombination.
29 napse and end-joining at modest level during V(D)J recombination.
30 rotein(s) to limit error-prone repair during V(D)J recombination.
31 ne lymphocytes show no measurable defects in V(D)J recombination.
32 g lymphocyte Ag receptor loci cleaved during V(D)J recombination.
33 2+) are present, unlike a single nick during V(D)J recombination.
34 re defects in end joining during chromosomal V(D)J recombination.
35 sites is dispensable for the joining step of V(D)J recombination.
36 sequences may have a role in long-range IgH V(D)J recombination.
37 ring proper repair of DNA breaks made during V(D)J recombination.
38 transcriptional accessibility helps control V(D)J recombination.
39 lopment and their lymphocytes support normal V(D)J recombination.
40 both hairpin opening and end-ligation during V(D)J recombination.
41 ding the stage at which this locus undergoes V(D)J recombination.
42 rticipates in a specialized version of NHEJ, V(D)J recombination.
43 and inconsequential variant of the canonical V(D)J recombination.
44 ding of the Igkappa locus in preparation for V(D)J recombination.
45 y and caused by defects in lymphoid-specific V(D)J recombination.
46 ect consequences of BCL11A/RAG modulation on V(D)J recombination.
47 ther to facilitate or to impose a barrier to V(D)J recombination.
48 rk that regulates B cell fate by controlling V(D)J recombination.
49 pening step, which is crucial and unique for V(D)J recombination.
50 T-cell development and T-cell receptor (TCR) V(D)J recombination.
51 hairpin intermediates that are formed during V(D)J recombination.
52 rated during Variable, Diverse, and Joining [V(D)J] recombination.
53 inetics of variable, diversity, and joining [V(D)J] recombination.
55 requires the participation of all V genes in V(D)J recombination(16), which depends on contraction of
57 DSBs) induced by the RAG endonuclease during V(D)J recombination activate the Ataxia Telangiectasia m
58 partial immune defects caused by suboptimal V(D)J recombination activity, a DNA repair defect, or bo
62 fferential activation of component parts for V(D)J recombination, allelic exclusion, and receptor edi
63 B cell antigen receptor (BCR) repertoire by V(D)J recombination also generates autoreactive B cells.
67 rmal kinase activity and underwent efficient V(D)J recombination and class switch recombination, indi
71 ng' process, which can also lead to Iglambda V(D)J recombination and expression, provides a mechanism
72 responsible for opening DNA hairpins during V(D)J recombination and for processing a subset of patho
73 ion within the Ig heavy chain locus precedes V(D)J recombination and has been proposed to be associat
74 clease that opens coding hairpin ends during V(D)J recombination and has critical roles in postirradi
75 f RAG1 is a negative regulatory mechanism in V(D)J recombination and identify regions of the RAG1 N-t
76 ) mediates double-stranded DNA break repair, V(D)J recombination and immunoglobulin class switch reco
78 TEMIS C terminus is dispensable for cellular V(D)J recombination and in vitro nuclease assays with C-
83 However, ATM deficiency causes only modest V(D)J recombination and lymphocyte developmental defects
84 d transposition, illuminate the evolution of V(D)J recombination and provide insight into the princip
85 ted pro-B lines abrogates DSB joining during V(D)J recombination and sensitizes the cells to ionizing
87 mechanisms that might contribute to aberrant V(D)J recombination and the development of lymphoid tumo
89 harbour intermediates indicative of ongoing V(D)J recombination and which contain cells with pro-B,
90 mmed mechanistic feature of CSR as it is for V(D)J recombination and, if so, how this is achieved is
91 mphopenia associated with a severe defect in V(D)J recombination and, in the absence of p53, increase
92 uman IGHV1-2( *)02 segment to undergo normal V(D)J recombination and, thereby, leads to the generatio
94 data provide a window into the mechanisms of VDJ recombination and diversity creation and allow us to
97 ficant correlation between biases induced by VDJ recombination and our inferred selection factors tog
98 B ligation, resulting in failure to complete VDJ recombination and subsequent block of B-lymphocyte m
100 nteraction with Ligase IV or DNA-PKcs reduce V(D)J recombination, and Artemis mutations that affect i
101 Shark Ag receptors are generated through V(D)J recombination, and because it is a mechanism known
102 ns involving the Tcralpha/delta locus during V(D)J recombination, and instead harbor alterations at t
104 deficiency in mice severely impairs C-NHEJ, V(D)J recombination, and lymphocyte development while al
105 e to state in a hidden Markov model (HMM) of VDJ recombination, and assumed that mutations occur via
106 ort frequency estimation, learn the rules of VDJ recombination, and generalize well to unseen sequenc
107 chastic steps: random receptor generation by VDJ recombination, and selection based on the recognitio
108 a process called variable-diversity-joining (VDJ) recombination] and, upon successful rearrangement,
109 hain that, owing to junctional biases during V(D)J recombination, appear much more frequently than pr
111 combinatorial splicing of coding segments by V(D)J recombination are hallmarks of vertebrate immunity
112 Ig gene locus contraction and looping during V(D)J-recombination are essential for creating a diverse
113 ntroduced by somatic mutation or heavy chain VDJ recombination are necessary and sufficient for Dsg3
115 for understanding retroviral integration and V(D)J recombination as well as many other DNA transposit
120 We propose that dicentrics formed by joining V(D)J recombination-associated IgH DSBs to DSBs downstre
121 iversity (D), and joining (J) gene segments [V(D)J recombination] asynchronously in nuclei of develop
124 Enhancers at AR loci are known to control V(D)J recombination at associated alleles, in part by in
125 tify the genomic instability associated with V(D)J recombination at the TCRdelta locus as the molecul
126 uggest that the nuclear periphery suppresses V(D)J recombination, at least in part, by segregating Tc
129 her with its cofactor RAG2, is essential for V(D)J recombination but is a potent threat to genome sta
130 ic DNA insertions by transposition and trans-V(D)J recombination, but only few such putative events h
131 G2 recombinase (RAG) cleaves DNA to initiate V(D)J recombination, but RAG also belongs to the RNH-typ
132 ation-activating gene endonuclease initiates V(D)J recombination by cleaving a pair of gene segments
133 pe long-range interactions and contribute to V(D)J recombination by facilitating lineage- and develop
134 ation activating gene endonuclease initiates V(D)J recombination by generating DSBs between two V(D)J
135 ropose that recombination centers coordinate V(D)J recombination by providing discrete sites within w
139 ferences in CDR H3 junctional regions during VDJ recombination can alter reactivity and evolutionary
141 the lack of variable, diversity and joining [V(D)J] recombination completely abolishes the Tcralpha/d
142 orting that E2A, PAX5, and the RAGs are in a VDJ recombination complex bound to key sequences on the
143 We show that pre-BCR activation releases the VDJ recombination complex through calmodulin binding to
144 Our studies elucidate a long-sought Igh V(D)J recombination control region and indicate a new ro
146 includes overexpression of genes involved in VDJ recombination, CXCR4 pathway signaling, and BCL2 fam
147 CD8(+) thymocytes, but led to no discernible V(D)J recombination defect in G1 phase cells beyond that
148 evealed specific signatures in patients with V(D)J recombination-defective primary immunodeficiencies
149 vation in XLF-deficient pro-B lines leads to V(D)J recombination defects associated with marked degra
151 on of a CBE-based IgH locus element disrupts V(D)J recombination domains and, correspondingly, alters
153 o find that PAXX deficiency has no impact on V(D)J recombination DSB joining in ATM-deficient pro-B l
154 report that PAXX is dispensable for joining V(D)J recombination DSBs in G1-arrested mouse pro-B-cell
156 ent for NHEJ to resolve DSBs associated with V(D)J recombination, DSBs associated with CSR can be res
158 ating gene products, RAG1 and RAG2, initiate V(D)J recombination during lymphocyte development by cle
160 ned XLF and H2AX deficiency severely impairs V(D)J recombination, even though H2AX deficiency alone h
162 region exons are assembled by RAG-initiated V(D)J recombination events in developing gammadelta thym
164 ssion levels of several transcripts encoding V(D)J recombination factors were decreased in adults as
165 over, since the classical 12/23 rule for the V(D)J recombination fails to explain the V(DD)J recombin
166 n initial random DNA editing process, called VDJ recombination, followed by functional selection of c
167 SJ defects, indicating that the overlapping V(D)J recombination functions of ATM and DNA-PKcs are me
168 thy humans suggests an important role of the V(D)J recombination-generated junctional and allele-spec
169 damage-induced cell death, however, because V(D)J recombination generates double-strand breaks and m
170 eptor (TCR) and immunoglobulin (Ig) genes by V(D)J recombination generates the antigen receptor (AgR)
171 es showed greatly enhanced expression of the VDJ recombination genes DNTT, RAG1, and RAG2, but not AI
172 role for the C-terminal region of Artemis in V(D)J recombination has not been defined, despite the pr
173 -established functions in the DNA repair and V(D)J recombination, hence loss of DNA-PK leads to sever
174 development, XLF-deficient mice have normal V(D)J recombination, highlighting the need for an altern
177 ates RAG-mediated cleavage and repair during V(D)J recombination in CD4(+) CD8(+) DP thymocytes.
178 netic locus (Tcra/Tcrd locus) that undergoes V(D)J recombination in CD4(-)CD8(-) double-negative (DN)
179 shows that XLF has an important role during V(D)J recombination in creating diversity of the reperto
180 and resolves the DSBs generated during both V(D)J recombination in developing lymphocytes and class
184 ination by RAG1 alone differs from canonical V(D)J recombination in having lost the requirement for a
186 ctor (XLF) C-NHEJ protein is dispensable for V(D)J recombination in normal cells, but because of func
187 equired for efficient class switch (CSR) and V(D)J recombination in part because they protect DNA end
189 he V(H)-to-D intergenic region regulates Igh V(D)J recombination in the contexts of developmental ord
193 ubstrate histone H2AX are both essential for V(D)J recombination in XLF-deficient lymphocytes, despit
194 and differences exist between brain SGR and VDJ recombination in the immune system, the first identi
195 signaling in B-cell development, we studied VDJ recombination in the pro-B cells of FLT3/ITD mice an
196 nt translocations and amplifications involve V(D)J recombination-initiated breaks in the Tcrd locus,
197 mutant mice harbor translocations that fuse V(D)J recombination-initiated IgH double-strand breaks (
198 tions during lymphocyte development, joining V(D)J recombination intermediates during antigen recepto
199 mosome alterations that result from aberrant V(D)J recombination involve breaks at single recombinati
200 ase with zebrafish maturity, suggesting that VDJ recombination involves a level of deterministic prog
208 Within the 2.7-megabase mouse Igh locus, V(D)J recombination is regulated to ensure specific and
209 To understand better the mechanism by which V(D)J recombination is suppressed at the nuclear periphe
210 ously in double-negative thymocytes and that V(D)J recombination is suppressed on peripheral as compa
215 CTCF-mediated looping was shown to influence V(D)J recombination, it was not possible to fully resolv
216 domain and, correspondingly, shifts the Tcrd V(D)J recombination landscape by leading to predominant
217 combined DNA-PKcs and ATM deficiency during V(D)J recombination leads to accumulation of unjoined SE
219 her, these data suggest a mechanism by which V(D)J recombination may feed back to regulate local Dbet
220 years that the variable (diversity) joining [V(D)J] recombination-mediated assembly of diverse B and
221 dels are defined in terms of a probabilistic V(D)J recombination model which is sometimes combined wi
222 ll development, RAG-dependent DNA breaks and V(D)J recombination occur at three T-cell receptor (TCR)
225 versity through N-nucleotide addition during V(D)J recombination of IG/TCR genes, here we propose tha
226 c repeat (CRISPR) loci in prokaryotes and by V(D)J recombination of immunoglobulin genes in vertebrat
227 to predict the probability of generation by V(D)J recombination of T- and B-cell receptors of any sp
229 Lucas et al. report the visualization of V(D)J recombination of the immunoglobulin heavy-chain ge
230 e discuss CTCF function in the regulation of V(D)J recombination on the basis of established knowledg
235 F protein is not required for the process of V(D)J recombination per se, CTCF turned out to be essent
236 ly resolve the relative contributions to the V(D)J recombination phenotype of changes in accessibilit
237 the impact of heritable factors on both the V(D)J recombination process and on thymic selection.
238 d participates in hairpin opening during the V(D)J recombination process and repair of a subset of DN
240 velopment of T and B cells by initiating the VDJ recombination process that leads to generation of a
241 fferent ages, we quantify the changes in the VDJ recombination process that occur from embryo to youn
245 transposition pathway resembles that of the V(D)J recombination reaction and the mechanism of hAT an
246 g DSB intermediates of the G1 phase-specific V(D)J recombination reaction in progenitor lymphocytes.
247 e RAG1/RAG2 endonuclease (RAG) initiates the V(D)J recombination reaction that assembles immunoglobul
249 al lamina propria (LP), where the associated V(D)J recombination/receptor editing processes modulate
255 ciency in Artemis is associated with lack of V(D)J recombination, sensitivity to radiation and radiom
256 ructural constraints form the basis to shape VDJ recombination sequences into MHC-restricted repertoi
259 versification of the immunoglobulin genes by V(D)J recombination, somatic hypermutation, and class sw
261 ay distinct from DNA transposition and trans-V(D)J recombination that destabilizes the genome and sha
262 developed approach for studying chromosomal V(D)J recombination that has been modified to allow for
264 immature B cells, allowing continued Igkappa V(D)J recombination that replaces the initial VkappaJkap
265 ginates in a stochastic DNA editing process (VDJ recombination) that acts on the surface receptor gen
266 of the germline TCR locus, a process termed V(D)J recombination, that has the potential to generate
267 ing gene 1 (RAG1) and RAG2 proteins initiate V(D)J recombination, the process that assembles the B- a
268 is essential in vertebrates because, during V(D)J recombination, the RAG complex generates hairpins
271 the C-terminal region of Artemis influences V(D)J recombination through its interaction with both Li
273 sistent with the requirement for NHEJ during V(D)J recombination to ensure diversity of the adaptive
275 RAG-2 enzyme upon entry to S phase restricts V(D)J recombination to the G0-G1 phase of the cell cycle
276 discriminate against MHC binding, suggesting VDJ recombination together with Valpha/Vbeta pairing det
277 ned to function in cells that have undergone VDJ recombination using any combination of variable (V),
278 in (Ig)-superfamily of genes; and instead of V(D)J recombination VLR are somatically assembled by a g
279 d RAG2 for antigen receptor gene assembly by V(D)J recombination was a crucial event in the evolution
282 alian RAG1-RAG2 recombinase, which initiates V(D)J recombination, we find that the active site is rec
283 ms by which CTCF-mediated looping can impact V(D)J recombination, we introduced an ectopic CTCF bindi
286 RAG1-like, have a latent ability to initiate V(D)J recombination when coexpressed with RAG2 and that
288 upstream of Cmu, have important roles during V(D)J recombination, whereas there is no clue about a ro
289 ch developing lymphocyte by a process called V(D)J recombination, which assembles specific, independe
291 gene assembly occurs through the process of V(D)J recombination, which is initiated when the RAG end
292 ing the lymphoid-specific DNA rearrangement, V(D)J recombination, which is required for lymphocyte de
293 that catalyzes specific DNA cleavage during V(D)J recombination, which is required for the assembly
294 oping lymphocytes, DSBs are generated during V(D)J recombination, which is required to assemble the s
295 Immunoglobulin genes are formed through V(D)J recombination, which joins the variable (V), diver
296 tor repertoire is sculpted by the process of V(D)J recombination, which must strike a balance between
297 rise to the RAG1-RAG2 recombinase (RAG) and V(D)J recombination, which produces the diverse repertoi
298 the core-enhancer Emu element mainly affects VDJ recombination with minor effects on class switch rec