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1 Watson and Puelles now newly propose that the mammalian
2 Watson-Crick base pairing of the modified guanine with t
3 Watson-Crick base pairs in dsDNA exist in dynamic equili
4 Watson-Crick base-pairing slows the rate of vibrational
7 large-scale conformational change to adopt a Watson-Crick-like dG*dTTP base pair and a closed protein
8 taneous errors occur when mismatches adopt a Watson-Crick-like geometry through tautomerization and/o
9 pair forms three hydrogen bonds and adopts a Watson-Crick-like geometry rather than a wobble geometry
10 e find that whereas hydrogen bonds between a Watson-Crick base pair of template DNA and incoming NTP
11 features: (i) the loop region is closed by a Watson-Crick base pair between Psi1911 and A1919, which
13 erved that the probability a G/U will form a Watson-Crick (WC) base pair depends on sequence context.
14 lect the base of the incoming dNTP to form a Watson-Crick pair with the template base but also distin
15 vivo due to its anti-conformation forming a Watson-Crick base pair with correct deoxycytidine 5'-tri
19 damaged nucleotides, with the exception of a Watson-Crick-like dGTP insertion opposite T, using BER D
20 ation state, polbeta appears to allow only a Watson-Crick-like conformation for purine*pyrimidine bas
21 substitution, which selectively knocks out a Watson-Crick-type (G)N2H2...O2(T) hydrogen bond, signifi
22 t metal ions, a free 5'-flap (if present), a Watson-Crick base pair at the terminus of the reacting d
29 ntify and classify modifications that affect Watson-Crick base pairing at three different levels of t
31 d promotes mutagenic replication by allowing Watson-Crick-mode for O6MeG.T but not for O6MeG.C in the
40 ermediates in the transition pathway between Watson-Crick and HG base pairs for both naked B-DNA and
42 between nonadjacent regions and employ both Watson-Crick and non-Watson-Crick base-pairing, screenin
44 Relative to unpaired adenines in a bulge, Watson-Crick A-T base pairs in dsDNA only conferred ~130
49 tributes to the selection of correct dNTP by Watson-Crick base pairing, but it cannot explain how low
54 uble helix structure of DNA was published by Watson and Crick, Sanger's group announced the first ami
57 nalysis reveals that Fm7dG forms a canonical Watson-Crick base pair with dCTP, but metal ion coordina
58 its high programmability based on canonical Watson-Crick base pairing, with crystal assembly in all
63 are an alternative base pairing to canonical Watson-Crick bps and are thought to play important bioch
64 ch experiments was well described by a Chick-Watson model with first-order dependences on disinfectan
65 trating the applicability of classical Chick-Watson kinetics for all fullerenes employed in this stud
68 lly Referential Food Grunts of Chimpanzees", Watson et al.[1] claimed that they "provide the first ev
70 r "double-check" provided by the concomitant Watson-Crick and Hoogsteen base pairings involved in tar
71 e-site pocket with planar stacking contacts, Watson-Crick polar hydrogen bonds and van der Waals inte
72 hirality are incapable of forming contiguous Watson-Crick base pairs with each other-has enforced a "
78 gly, a conformational change of the designed Watson-Crick duplex region resulted in crystal packing d
79 ons with p53, the current structures display Watson-Crick base pairs associated with direct or water-
80 nodeoxyadenosine (epsilondA), which disrupts Watson-Crick base pairing, occurs via Poliota/Polzeta-,
83 raying individual base blocks, DSSR can draw Watson-Crick pairs as long blocks and highlight the mino
84 lection on spectroscopic data, called Durbin-Watson partial least-squares regression (dwPLS), is prop
85 ariables whose intervals have a lower Durbin-Watson statistic (dw) than a certain optimal cutoff.
87 NA (ssDNA) bound to site I in RecA exchanges Watson-Crick pairing with a sequence-matched ssDNA that
89 of nanoparticle arrays and lattices exploit Watson-Crick base pairing of single-stranded DNA sequenc
90 ts.1 The design of these structures exploits Watson-Crick hybridization and strand exchange to stitch
92 but also causes the enzyme to favor faithful Watson-Crick base pairing over mutagenic configurations.
93 guanine (dG-N2) provides direct evidence for Watson-Crick (G)N2H2...O2(T) hydrogen bonding in the tra
94 idelity (relative rate of base-extension for Watson-Crick versus mismatched base pairs), replications
95 ugh 1-MeA suggests that despite its need for Watson-Crick hydrogen bonding, Poleta can stabilize the
96 ES-Rosetta recovers the 10 NN parameters for Watson-Crick stacked base pairs and 32 single-nucleotide
98 ly disfavored anti conformation required for Watson-Crick pairing is responsible for the reduced anne
99 nucleobase pairs follow standard rules for Watson-Crick base pairing but have rearranged hydrogen b
100 sion of the two phosphate backbones, forcing Watson-Crick base-pairs within the duplex to flip outwar
101 tion, both guanines of the Pt-GG lesion form Watson-Crick base pairing with the primer terminus dC an
103 y short-lived and low-abundance species form Watson-Crick-like base pairs, their conformation could n
104 oogsteen bps in crystal structures that form Watson-Crick bps when examined under solution conditions
105 rogation, bases in the dsDNA attempt to form Watson-Crick bonds with the corresponding bases in the i
108 ture, BrG adopts anti conformation and forms Watson-Crick base pairing with the incoming dCTP analog.
113 asses the statistical accuracy of the Galton-Watson model, which is the most commonly employed model
114 f these biradicals return to the original GC Watson-Crick pairs, but up to 10% of the initially excit
115 citation of individual guanine-cytosine (GC) Watson-Crick base pairs by ultrafast time-resolved UV/vi
117 itution can originate from a mismatch having Watson-Crick geometry, and they suggest a common catalyt
119 d into the helix and forms a trans Hoogsteen-Watson-Crick base pair with a uridine, thus becoming an
120 is based on the Langmuir-Hinshelwood-Hougen-Watson (L-H-H-W) postulates and considers the adsorption
121 n-based, cross-sectional analysis of the IBM Watson Health MarketScan insurance claim dataset, which
123 dsDNA targets (triplex association) and (ii) Watson-Crick complement-mediated displacement of the TFO
126 show that there is a significant decrease in Watson-Crick duplex stability of the heterogeneous backb
128 strand 5'-end nucleotide need not engage in Watson-Crick (W/C) H-bonding but must fit the general sh
129 ons with a thymine-thymine (T-T) mismatch in Watson-Crick base-pairs and the ligative disassembly of
132 bone-for example, the bases participating in Watson-Crick pairing in the double helix, or the side ch
133 cialized alignment software can also include Watson-Crick base pairs, but none adequately addresses t
134 display noncovalent interactions, including Watson-Crick base pairing, Hoogsteen H-bonding, and pai-
136 within known structured RNAs are folded into Watson-Crick (WC) base pairs, and sequence changes that
137 igned branched kissing-loop motif, involving Watson-Crick base pairing between the single-stranded re
138 ion between the complementary strand and its Watson-Crick pairing partners promotes the rapid unbindi
139 RNA polymerase incorporates ZTP opposite its Watson-Crick complement, imidazo[1,2-a]-1,3,5-triazin-4(
142 he availability of tRNA decoding mechanisms: Watson-Crick, non-Watson-Crick or both types of interact
143 he end of the substrate-binding pocket mimic Watson-Crick interactions providing guanine base specifi
144 ity through a conformational shift of native Watson-Crick pair to a wobble-like pattern with the form
146 ta show that the Z:P pair mimics the natural Watson-Crick geometry in RNA in the first example of a c
148 model should therefore be divided in the new Watson/Puelles model into a smaller ventral pallium and
150 and azide building blocks catalyzed by a non-Watson-Crick DNA secondary structure (see picture).
151 n for these residues in recognition of a non-Watson-Crick G(-1):A(73) bp, which had not been describe
152 ased on isostericity of Watson-Crick and non-Watson-Crick base pairs, along with the collapsing (hori
153 regions and employ both Watson-Crick and non-Watson-Crick base-pairing, screening of candidate binder
158 d ternary (Pol X:DNA:MgdGTP with dG:dGTP non-Watson-Crick pairing) forms, along with functional analy
159 binding mode, and a novel mechanism for non-Watson-Crick incorporation by a low-fidelity DNA polymer
160 f messenger RNAs (mRNAs) and can involve non-Watson-Crick base pairing in the miRNA seed region.
162 ters for qualitative characterization of non-Watson-Crick double-helical structures; new structural p
164 s may locally influence the formation of non-Watson-Crick structures from otherwise complementary seq
168 and physicochemical properties of these non-Watson-Crick G4 structures make them important targets f
169 t the 3' ss is mainly recognized through non-Watson-Crick base pairing with the 5' ss and branch poin
170 erefore, electron transport also through non-Watson-Crick base-paired regions might be required.
171 te AG dinucleotide is recognized through non-Watson-Crick pairing with the 5' splice site and the bra
172 ecursor messenger RNA (pre-mRNA) through non-Watson-Crick pairing with the 5'SS and the branch adenos
173 secondary structures displaying noncanonical Watson-Crick base pairing, have recently emerged as key
174 ubfamily, could be replaced with noncovalent Watson-Crick hydrogen bonds without significantly affect
178 used two different means to assemble DNA-NPs-Watson-Crick base-pairing interactions and depletion int
179 show that HCV IRES activity requires a 3-nt Watson-Crick base-pairing interaction between the apical
180 tes within the active site in the absence of Watson-Crick base pairing with template and mapped movem
181 AC8, GC8, and GN2, pointing to an absence of Watson-Crick hydrogen bonding, yet the presence of some
183 mi components and different architectures of Watson-Crick complementary single-stranded DNA ("sticky
184 sis of DNA stretching shows that breaking of Watson-Crick bonds is not necessary for the existence of
187 of recently discovered transient flipping of Watson-Crick (WC) pairs into Hoogsteen (HG) pairs (HG br
188 automeric forms that enable the formation of Watson-Crick-like (WC-like) mispairs, which have been pr
189 ion of an alignment based on isostericity of Watson-Crick and non-Watson-Crick base pairs, along with
191 er-represented in the methylation profile of Watson Grade 1 samples (mild hippocampal sclerosis).
194 at the nanoscale through the specificity of Watson-Crick base pairing, allowing both complex self-as
195 y, can provide insight into the stability of Watson-Crick pairs and the role of specific functional g
196 ined here still significantly exceed that of Watson-Crick G.C base pairs, such that DNA i-motif confo
197 aughter cells derives from inheriting 'older Watson' versus 'older Crick' DNA strand from the parenta
198 Meanwhile, nucleic acid probes based on Watson-Crick base-pairing rules are also being widely ap
200 ethods used to probe RNA structure report on Watson-Crick pairing, but tertiary structure parameters
201 to form a Z:P pair with a standard "edge on" Watson-Crick geometry, but joined by rearranged hydrogen
202 zin-4-one and 6-amino-5-nitropyridin-2-one), Watson-Crick complements from an artificially expanded g
203 in how low-fidelity DNA polymerases overcome Watson-Crick base pairing to catalyze non-Watson-Crick d
205 equilibrium with short-lived, low-populated Watson-Crick-like mispairs that are stabilized by rare e
210 nar base pair, the first structure of pseudo-Watson-Crick O6MeG.T formed in the active site of a DNA
211 all cases with high 3'-5' regioselectivity, Watson-Crick base pairing between the RNA monomers and t
213 he cleavage site (e.g. T^G), while retaining Watson-Crick sequence generality beyond those nucleotide
216 he alphaA base is intrahelical, in a reverse Watson-Crick orientation, and forms a weak base pair wit
219 ity, responsible for the formation of robust Watson-Crick H-bonded cyclic tetramers, and nucleation-g
220 e. bulge vs. contiguous pairs) and sequence (Watson-Crick vs. G:U pairs) preferences for human and mo
223 cts, van der Waals interactions and specific Watson-Crick polar hydrogen bonds to ensure high enzymat
224 mited by the need to forward-design specific Watson-Crick base pairing manually for any given target
225 led nanoscale architectures through specific Watson-Crick base-pairing, molecular plasticity, and int
226 due to the ability of 8-oxoG to form stable Watson-Crick base pairs with deoxycytidine (8-oxoG:dC) a
227 ismatch arrangements, but also in a standard Watson-Crick base pair, adopted the same C3'-endo ribose
230 ored to the 5'-end of the sequence by an A.T Watson-Crick base pair and a potential G.A noncanonical
231 t, consistent with stabilization by tertiary Watson-Crick base pairing found in the folded Diels-Alde
233 ining only DNA components, establishing that Watson-Crick base-pairing interactions alone suffice for
237 ecule coordinating a Mg(2+) ion bound at the Watson-Crick edge of residue C7, or the N3 position of r
238 crosslinks, which, by covalently binding the Watson and the Crick strands of DNA, impede replication
239 ,N(6)-gamma-HMHP-dA is expected to block the Watson-Crick base pairing of the adducted adenine with t
241 um with Hoogsteen base pairs that expose the Watson-Crick faces of purine nucleobases to solvent.
245 otifs of protein-adenine interactions in the Watson-Crick edge of adenine and shows that all of adeni
246 (5)s(2)U(34).G(3) wobble base pair is in the Watson-Crick geometry, requiring unusual hydrogen bondin
248 ighly toxic lesions that covalently link the Watson and Crick strands of the double helix, are repair
250 rogrammable properties, the linearity of the Watson-Crick B-form duplex imposes limitations on 3D cry
252 The specificity and predictability of the Watson-Crick base pairing make DNA an excellent building
254 ical modifications, e.g., methylation of the Watson-Crick face of unpaired adenine and cytosine resid
255 mers still significantly exceed those of the Watson-Crick G*C and neutral C*C base pairs, suggesting
256 ommodated with almost no perturbation of the Watson-Crick hydrogen-bond network and induces bend and
257 base pair tension due to the transfer of the Watson-Crick pairing of the complementary strand bases f
258 energetically preferred syn geometry on the Watson-Crick face to the higher-energy anti conformation
261 -IQ adopted the syn conformation placing the Watson-Crick edge of the modified dG into the major groo
264 crofluidic processor is used to separate the Watson and Crick strands of the double-stranded chromoso
266 ed that deleterious alkylation damage to the Watson-Crick faces of nucleobases predominantly occurs w
268 zed compound that covalently attaches to the Watson-Crick-Franklin face of several nucleobases, addre
269 ortune in my career were to stumble upon the Watson-Gilbert laboratory at Harvard when I entered grad
270 he additional nucleobases could expose their Watson-Crick and/or Hoogsteen faces for recognition in t
271 w recent quantum chemical estimates of their Watson-Crick interaction energy, pi-pi stacking energies
273 trand Specifier nucleotides stack with their Watson-Crick edges displaced toward the minor groove.
274 r and show that the L-nucleotide forms three Watson-Crick hydrogen bonds with the templating nucleoti
275 n sequences would uniquely associate through Watson-Crick assembly to form closed-cycle or linear arr
276 cleoside can spontaneously associate through Watson-Crick canonical H-bonding and pi-pi stacking to f
278 in C(+)*C proton-bound dimers as compared to Watson-Crick G*C base pairs are the major forces respons
279 ) provide an alternative pairing geometry to Watson-Crick (WC) bps and can play unique functional rol
280 rees rotation of the purine base relative to Watson-Crick (WC) base pairing within DNA duplexes, crea
285 lectron-hole transport between the other two Watson-Crick-paired stems, across the three-way junction
286 e unique geometry of canonical G.C and A.T/U Watson-Crick base pairs to discriminate against DNA and
287 058 stacking leading to disrupted A752-U2609 Watson-Crick (WC) interactions as well as hydrogen bondi
289 is of a novel bio-MOF featuring unobstructed Watson-Crick faces of adenine (Ade) pointing towards the
291 ciferase gene in cell-free translation using Watson-Crick base pairing between the mRNA and a complem
292 aining two nucleic acid elements coupled via Watson-Crick base pairing: (i) an aptamer sequence, whic
293 d of the DNAzyme binds the substrate DNA via Watson-Crick bonding and the 3'-end binds through format
296 looped-out alignment facilitated by weakened Watson-Crick and reversed non-canonical flanking pairs.
297 polymer systems such as nucleic acids, where Watson-Crick H-bonds are fully paired in double-helical
298 ) the classical intercalation motif in which Watson-Crick base pairing is intact at the lesion site a
300 mation and formed a Hoogsteen base pair with Watson-Crick-like geometry, highlighting the dual-coding
301 ombinations involve cognate recognition with Watson-Crick pairs and 59 involve near-cognate recogniti