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1 XPD has a 5' to 3' polarity and the helicase activity is
2 XPD in contrast is shown to be a rigid protein with almo
3 XPD is a 5' to 3' helicase with an essential iron-sulfur
4 XPD is a key nucleotide excision repair (NER) protein wh
5 XPD was not stalled by substrates containing extrahelica
6 XPD was subsequently recruited to the triplex-induced do
7 XPD, a 5'-3' helicase involved in nucleotide excision re
9 phoblastoid cell lines (LCLs), but not in an XPD heterozygote LCL, after exposure to doxorubicin, a D
10 UvrB as a template for the development of an XPD model was tested by mimicking human disease-causing
13 e nucleotide excision repair genes ERCC1 and XPD (Ercc1(d/-) and Xpd(TTD) mice), we explored age-depe
14 human TFIIH complex proteins XPB (ERCC3) and XPD (ERCC2) play a principal role in the degradation of
15 or alleles in DNA repair genes XPF/ERCC4 and XPD/ERCC2 were associated with altered risk for pancreat
16 in the FeS domain of human Bach1 (FancJ) and XPD helicases that result in distinct disease phenotypes
18 5, bcl-2 and bax were observed in normal and XPD LCLs after treatment with doxorubicin, indicating th
19 n-adducted oligonucleotide was observed, and XPD helicase activity was readily inhibited by both sing
22 r per 1-unit increase in severity score) and XPD (0.60 points/year per 1-unit increase), and in ADL t
23 scopy analyses, we demonstrate that UvrB and XPD are able to load onto DNA and pursue lesion verifica
24 ved to be achieved by the helicases UvrB and XPD in the prokaryotic and eukaryotic processes, respect
27 l regulatory mechanism that switches XPB and XPD activities making them mutually exclusive between NE
28 ypothesized that TFIIH DNA helicases XPB and XPD are members of the p53-mediated apoptotic pathway.
29 tailed structures of its constituent XPB and XPD ATPases, and how the core and kinase subcomplexes of
31 its repair functions and harbors the XPB and XPD DNA-dependent ATPase/helicase subunits, which are af
32 By sequentially coordinating the XPB and XPD DNA-unwinding activities, the switch ensures precise
33 iption factor IIH complex, including XPB and XPD helicases involved in promoter melting and open comp
34 nition pathways converge and how the XPB and XPD helicases of Core7 move the DNA lesion for verificat
35 cate the nuclear DNA repair proteins XPB and XPD in a cellular defense against retroviral infection.
36 Pase and helicase activities of both XPB and XPD in Core7 to promote NER, whereas non-genuine NER sub
41 -damaged sites; (iii) recruitment of XPB and XPD proteins to UV DNA damage sites; and (iv) increased
42 least two of the subunits of TFIIH (XPB and XPD proteins) are implicated in the disease xeroderma pi
44 osum complementation groups B and D (XPB and XPD) which are partially defective in the ERCC2 (XPD) an
52 iochemical studies of the monomeric archaeal XPD homologues have aided a mechanistic understanding of
53 nt with a role in NER, we show that archaeal XPD can initiate unwinding from a DNA bubble structure,
54 g by the iron-sulfur cluster of the archaeal XPD (Rad3) helicase was used as a calibrated proximity s
55 issue, Honda et al. report that the archaeal XPD helicase can bypass a single-stranded DNA-binding pr
58 evidence for DNA-mediated signaling between XPD and Endonuclease III (EndoIII), a base excision repa
59 repair of mtDNA was markedly reduced in both XPD-suppressed human osteosarcoma (U2OS) cells and XPD-d
60 me genes, namely ERCC2/XPD or ERCC3/XPB Both XPD and XPB proteins belong to the 10-subunit complex tr
61 though iron-sulfur (Fe-S) cluster binding by XPD is required for activity, the process mediating Fe-S
62 lectrodes, we show DNA-mediated signaling by XPD, a helicase that contains a [4Fe-4S] cluster and is
63 bp) resolution, we analyzed DNA unwinding by XPD helicase, a Superfamily 2 (SF2) DNA helicase involve
65 entosum complementation group B (XPB) and D (XPD) genes and a cyclin-dependent protein kinase encoded
67 on 751 of the xeroderma pigmentosum group D (XPD) DNA repair gene were significantly more likely to h
72 a acidarmanus xeroderma pigmentosum group D (XPD) helicase serves as a model for understanding the mo
76 patients, the xeroderma pigmentosum group D (XPD)-751, x-ray cross-complementing group 3 (XRCC3) and
78 ng high-resolution X-ray powder diffraction (XPD) and rotation electron diffraction (RED) techniques.
80 Apart from two canonical helicase domains, XPD is composed of a 4Fe-S cluster domain involved in DN
84 d for developmental apoptosis in C. elegans, XPD-1 only activates stress-responsive functions of casp
86 ree nucleotide excision repair genes (ERCC1, XPD, and XPF), a gene involved in double-strand break re
87 ncies for 16 SNPs in DNA repair genes ERCC1, XPD/ERCC2, XPC, XPF/ERCC4, OGG1, and XRCC1 were compared
89 nd/or protein levels included: c-jun, ERCC1, XPD, XRCC1, Gli1, Gli2, SHH, IHH, GAPDH and alpha-tubuli
91 Gli1, c-jun, and the upregulation of ERCC1, XPD and XRCC1 in cisplatin-resistant human ovarian cance
92 isms in DNA repair genes APE1, XRCC1, ERCC1, XPD, and XRCC3 in predicting therapeutic outcomes of old
93 to complement extracts prepared from ERCC2 (XPD)- and ERCC3 (XPB)-deficient cells, respectively, in
95 which are partially defective in the ERCC2 (XPD) and ERCC3 (XPB) helicase activities shared between
97 t of TTD or XP cases with mutations in ERCC2/XPD gene, we identify the expression alterations specifi
99 om mutations in the same genes, namely ERCC2/XPD or ERCC3/XPB Both XPD and XPB proteins belong to the
103 re carriers of at least one minor allele for XPD/ERCC2 at D312N (OR, 2.78; 95% CI, 1.28-6.04) or D711
104 nd XPC bind damaged DNA and are required for XPD cross-linking to the psoralen-adducted base, neither
106 as well as the polymorphic DNA repair genes XPD and XRCC1, in influencing response to chemotherapy a
107 mutations in DNA repair/transcription genes XPD, XPB or TTDA, and in TTDN1, a gene of unknown functi
108 mental and physical developmental delay, has XPD mutations not previously reported, and barely detect
109 It has been proposed that the 5'-3' helicase XPD (xeroderma pigmentosum group D) protein plays a deci
113 (NER), the xeroderma pigmentosum D helicase (XPD) scans DNA searching for bulky lesions, stalls when
115 with the localization of the TFIIH helicases XPD and XPB, support a DNA translocation model of XPB an
117 olecular and dynamic characterization of how XPD translocates on undamaged DNA and how it stalls to v
118 d extensive all-atom MD simulations of human XPD bound to undamaged and damaged ssDNA, containing a m
126 Here we show that the specific mutations in XPD that cause TTD result in reduced expression of the b
130 scores significantly increased over time in XPD (0.91 points/year, 95% confidence interval: 0.61, 1.
132 d in a number of DNA repair genes, including XPD, but the effect of these polymorphisms on DNA repair
134 es important for genomic stability including XPD (nucleotide excision repair), DDX11 (sister chromati
136 show that triplexes are capable of inducing XPD-independent double strand breaks, which result in th
138 t, a 5' --> 3' DNA helicase catalyzed by its XPD subunit, and a carboxyl-terminal domain (CTD) kinase
140 eukaryotic helicases that includes mammalian XPD, an enzyme involved in transcription-coupled nucleot
142 y mimicking human disease-causing mutations (XPD: R112H, D234N, R601L) in UvrB (E110R, D338N, R506A)
144 pair of nuclear DNA, however, whether or not XPD exerts similar functions in mitochondria remains elu
146 t also impairs the DNA unwinding activity of XPD and the nucleotide excision repair activity of TFIIH
147 s known to regulate the helicase activity of XPD during NER, p62 is thought to be purely structural.
149 ion studies indicate that the association of XPD with the CIA targeting complex occurs in the cytopla
151 ructural and dynamic molecular depictions of XPD helicase activity with unmodified DNA and its inhibi
152 her, our results identify the ARCH domain of XPD as a platform for the recruitment of CAK and as a po
155 l the ATP-driven translocation mechanisms of XPD and its bacterial homolog DinG, revealing all on-pat
158 FM studies, we observe the redistribution of XPD onto kilobase DNA strands containing a single base m
159 ests a function for p62 in the regulation of XPD, and allows the mapping of previously unresolved hum
163 ential assembly process for Fe-S assembly on XPD and highlight the existence of quality control mecha
164 Second, disrupting Fe-S cluster assembly on XPD by either 1) depleting cellular iron levels or 2) ut
167 ase subunits xeroderma pigmentosum (XP) B or XPD yield overlapping DNA repair and transcription syndr
171 r and have germ-line mutations in the XPB or XPD gene, but not in the XPA or XPC gene, have a deficie
174 of apoptotic levels in cells from WS, XPB or XPD patients was attained only by overexpression of the
175 formation and find that mutations in XPB or XPD, the DNA helicase subunits of the transcription and
178 , we show that Xeroderma pigmentosum protein XPD has a conserved function in activating the expressio
179 Rad3 (xeroderma pigmentosum group D protein (XPD)) helicase is a prototypical member of the Rad3 fami
180 he human nucleotide excision repair protein, XPD, was developed based on the structural and functiona
181 ein levels of the core TFIIH component Rad3 (XPD homologue) and Ssl2 (XPB homologue) were significant
182 lyzed the substrate specificity of the Rad3 (XPD) helicase from Ferroplasma acidarmanus (FacRad3) and
183 sion and deliver the damaged strand to Rad3 (XPD) in an open form suitable for subsequent lesion scan
185 XPA rigging interlaces XPF/ERCC1 with RPA, XPD, XPB, and 5' ssDNA, exposing XPA's crucial role in l
186 uence similarity to the human (Homo sapiens) XPD and yeast (Saccharomyces cerevisiae) RAD3 genes requ
189 ements of the unwinding activity of a single XPD helicase in the presence of RPA2 reveal a mechanism
190 previously suggested links between specific XPD mutations in the fetal genome and the risk of placen
191 ctly interacts with the DNA helicase subunit XPD/Rad3 in native TFIIH and is required for the integri
192 ponent of transcription factor II H (TFIIH), XPD is involved in DNA unwinding during nucleotide excis
195 is study, we provide the first evidence that XPD is localized in the inner membrane of mitochondria,
196 ovide further support to the hypothesis that XPD and p53 can functionally interact in a p53-mediated
198 the only data in pediatric AML, suggest that XPD genotype does not affect the etiology or outcome of
199 e microscopy reveals for the first time that XPD utilizes different recognition strategies to verify
207 s with mutations in ERCC2, which encodes the XPD subunit of TFIIH, but not in XP cells with ERCC2 mut
209 and space group symmetry were found from the XPD data, and were essential for the initial analysis of
212 ession analysis, the Gln/Gln genotype in the XPD codon 751 showed the strongest association with both
213 patients with characterized mutations in the XPD gene have the haematological features of beta-thalas
214 studies have identified polymorphisms in the XPD gene that are associated with increased risk of brai
215 complex disorder caused by mutations in the XPD gene which affect both DNA repair and transcription.
220 edicted to be an iron-sulfur helicase in the XPD/Rad3 helicase family based on sequence analysis, the
222 ism to evaluate genetic polymorphisms of the XPD (Asp312Asn) and XRCC1 (Arg399Gln) DNA repair genes i
223 ses, we determined crystal structures of the XPD catalytic core from Sulfolobus acidocaldarius and me
224 dence that three common polymorphisms of the XPD gene (C156A, Asp312Asn, and Lys751Gln) may be associ
225 Here we report the first involvement of the XPD gene in a new case of UV-sensitive COFS syndrome, wi
226 The polymorphisms C156A and Asp312Asn of the XPD gene were not associated with response to 5-fluorour
228 sate for the T46I mutation by perturbing the XPD structure in a way that counteracts the effect of th
230 927 patients with AML, we show here that the XPD codon 751 glutamine-encoding variant significantly a
231 aFold predicts that STK19 interacts with the XPD subunit of TFIIH, and disrupting this interface impa
232 rnary CAK kinase complex associated with the XPD TFIIH subunit) are used as model systems to validate
235 at apoptosis is reduced and delayed in three XPD lymphoblastoid cell lines (LCLs), but not in an XPD
236 repaired by NER may not present a barrier to XPD translocation in vivo, in contrast to some predictio
238 repair rate, in the complemented XPC and TTD/XPD cells, almost all of the CPDs at "hotspots" for muta
242 pleting cellular iron levels or 2) utilizing XPD mutants defective in either Fe-S cluster or CIA targ
246 ent study puts to rest the debate of whether XPD helicase 'verifies' the appropriateness of the DNA d
247 rocess occurs in a stepwise fashion in which XPD acquires a Fe-S cluster from the CIA targeting compl
248 presence of RPA2 reveal a mechanism in which XPD interconverts between two states with different proc
251 In contrast, RPA2 did not interfere with XPD-ssDNA binding but markedly slowed down XPD transloca
253 used to identify interacting factor(s) with XPD and TUFM, a mitochondrial Tu translation elongation
254 olecule imaging of p44/p62 complexes without XPD reveals they bind to and randomly diffuse on DNA, ho
256 Gene activation was undiminished in XPA, XPD and XPG human cell lines, indicating that activation
258 eurological symptoms, especially in the XPA, XPD and XPG groups, with early-onset and late-onset form
259 m cells deficient in the NER genes XPG, XPA, XPD or XPF were resistant to Et743, and sensitivity was
260 e nucleotide excision repair apparatus (XPB, XPD, XPG and CSB), cells defective for the ERCC1-XPF str
261 en-subunit TFIIH core complex formed by XPB, XPD, p62, p52, p44, p34, and p8 is competent for DNA rep
262 xploited the availability of the cloned XPB, XPD, p62, p44, and p34 genes (all of which encode polype
263 r is TFIIH, which has a 6-subunit core (XPB, XPD, p44, p34, p52, p62) and a 3-subunit kinase (CAK).
264 Mutations in CSA (ERCC8), CSB (ERCC6), XPB, XPD, XPG, XPF (ERCC4) and ERCC1 can give rise to clinica
265 factor TFIIH, containing the helicases XPB, XPD and five 'structural' subunits, p62, p44, p34, p52 a
269 with CS symptoms have mutations in the XPB, XPD, or XPG genes, which result in UV hypersensitivity a