ライフサイエンスコーパス: accession

1 , with a mean value of 58.3 Mg ha(-1) across accession.

2 fragmentation pattern, in the 'Bhut Jolokia' accession.

3 e (Winspit), a high glucosinolate containing accession.

4 ed family derived from a landrace and a wild accession.

5 acid present in the UENF 1613 de C. baccatum accession.

6 antification of chlorogenic acid of the UENF accession.

7 lucosides predominated in the reddish-purple accession.

8 ptome data from a diverse panel of B. juncea accessions.

9 bitol, malic acid were recorded among tested accessions.

10 ives and other 32 uncategorized domesticated accessions.

11 uction, with significant differences between accessions.

12 for local adaptations in Arabidopsis natural accessions.

13 during cold treatment between paralogues and accessions.

14 information for over 28 000 genes for these accessions.

15 n, between the highest and lowest performing accessions.

16 e-genome shotgun sequencing of 300 gene bank accessions.

17 t differences were recorded between E- and E+accessions.

18 re selected for analysis of this group of 58 accessions.

19 the FRI locus in more than 1000 Arabidopsis accessions.

20 99 bp) and CNVs (500 bp and larger) in these accessions.

21 were upregulated in low-acylsugar-producing accessions.

22 response to cold in existing winter rapeseed accessions.

23 tween domesticated barley and 25 wild barley accessions.

24 esistance between cultivated and wild tomato accessions.

25 half of the pan-NLRome being present in most accessions.

26 CCD4b in C(30) apocarotenoid-rich red-peeled accessions.

27 llection of 485 wild and domesticated barley accessions.

28 dily available to over 1.8 million UniProtKB accessions.

29 ariety and important differences between the accessions.

30 f cytokinins in natural Arabidopsis thaliana accessions.

31 of aliphatic glucosinolates across Brassica accessions.

32 vity, is differently affected by Arabidopsis accessions.

33 Lee and G. soja assemblies are new for these accessions.

34 ariation of linalool emissions in 26 natural accessions.

35 on are highly variable among 725 A. thaliana accessions.

36 in environmental responses among Arabidopsis accessions.

37 d among genebanks and curate globally unique accessions.

38 . sexta oviposition, in the Arizona and Utah accessions.

39 te and dihydrocapsiate in eight pepper fruit accessions.

40 ces with the number of B genes in the hybrid accessions.

41 rtion allele, ask1, in different Arabidopsis accessions.

42 9-generated null mutants in nonstandard wild accessions.

43 entially significant (p <= 0.05) in both the accessions.

44 urple- and reddish-purple-pericarp sweetcorn accessions.

45 ified in HIPM and DIPM genes across 93 Malus accessions.

46 -wide association studies of 199 A. thaliana accessions.

47 onse to heat stress in a diverse set of rice accessions.

48 properties but variation between individual accessions.

49 tion, rather than the geographical origin of accessions.

50 the natural variant from less heat-tolerant accessions.

51 nd 1,345 gene groups that classify the 7,868 accessions.

52 root growth differences between Arabidopsis accessions.

53 gical traits in up to 88 wheat wild relative accessions across five genera.

54 was performed on two different B. sylvaticum accessions, Ain1 and Osl1, typical to warm and cold clim

55 luding a natural null allele, in three other accessions, all of which had enlarged-chloroplast phenot

56 ty composition and structure of ten Zea mays accessions along an evolutionary transect (two teosinte,

57 Here, we selected nine different Arabidopsis accessions along with the reference ecotype Columbia-0,

58 phism (SNP) markers were produced for the 71 accessions analyzed.

59 association studies (GWAS) using 775 tomato accessions and 2,316,117 SNPs from three GWAS panels.

60 visualization platform is available for the accessions and cultivars in rice breeding germplasm.

61 Variation in species, accessions and cultivation environment played an importa

62 es C and 28 degrees C in a set of 69 natural accessions and determined their thermo-responsiveness of

63 mined the gene copy numbers in a set of 1060 accessions and experimentally validated the accuracy of

64 viridis and de novo assemblies for 598 wild accessions and exploited these assemblies to identify lo

65 he genome assemblies for multiple cultivated accessions and for the closest wild ancestor of soybean

66 nome and haplotype block, polymorphism among accessions and genotyping quality.

67 sequenced fibre transcriptomes of 251 cotton accessions and identified 15 330 expression quantitative

68 sity in fire blight S genes in diverse apple accessions and identified candidate HIPM and DIPM allele

69 With over seven million existing accessions and increasing storage demands and costs, gen

70 nscript isoforms resulting from AS) in plant accessions and its contribution to responses to environm

71 red the root traits of wild and domesticated accessions and performed a multistep quantitative trait

72 Genetic diversity analysis of Poncirus accessions and Poncirus/Citrus hybrids shows a narrow ge

73 Variation between rice accessions and potential for accelerating induction was

74 traits distinguished wild from domesticated accessions and showed that seed weight affects many root

75 nt growth, physiology, and ion content in 67 accessions and two commercial tomato lines of Solanum ly

76 nrg1a-nrg1b double mutant in two Arabidopsis accessions, and an nrg1 mutant in Nicotiana benthamiana.

77 pulation, derived from 19 resistant parental accessions, and identified two transgressive segregants

78 , the only Ping locus shared by all bursting accessions, and shown here to correlate with high mPing

79 The plants of these Bravo teosinte accessions appear phenotypically normal themselves and t

80 In particular, CSA tea accessions are featured with high accumulation of divers

81 Two phenotypically divergent Poncirus accessions are found to be clonally related, supporting

82 genome-wide common markers across all lines/accessions are needed to reach maximum efficiency of gen

83 Arabidopsis thaliana accessions are universally resistant at the adult leaf s

84 ta files, GenBank files and/or NCBI assembly accessions as input and outputs an alignment file, estim

85 cumulation in A. thaliana and P. trichocarpa accessions as the outcome of SNPs in enzyme-coding genes

86 atile compounds of the leaves of ten perilla accessions as well as to determine total polyphenols, an

87 ng 1.8% of the genome in a collection of 373 accessions belonging to 11 Capsicum species from 51 coun

88 Ear Infirmary and at the Wills Eye Hospital accessioned between January 1, 2014 and January 1, 2017.

89 ndida race 2 (Ac2V) can be explained in each accession by at least one of four genes encoding nucleot

90 ) differences between accessions, years, and accession by year interaction for relative and absolute

91 , and evidence for 12 clusters that separate accessions by species.

92 advantage over the low altitude subtropical accession (CAN1).

93 acids, the high altitude temperate Himalayan accession (CAN2) was found to have an advantage over the

94 In the 'Tabasco' accession, capsiate and dihydrocapsiate were quantified

95 The accession code has now been changed from 'PDB A9X (AnkG:

96 the 'Data availability' section an incorrect accession code was given.

97 -infected roots of the wild-type Arabidopsis accession Col-0 and ein2/jar1, an ethylene/jasmonic acid

98 wide variation of AS in Arabidopsis thaliana accessions Col-0, Bur-0, C24, Kro-0 and Ler-1, as well a

99 n individuals from crosses with two teosinte accessions collected near Valle de Bravo, Mexico.

100 lyzed six uvaia (Eugenia pyriformis Cambess) accessions ('Comum', 'Rugosa', 'Doce de Patos de Minas',

101 variant from more heat-tolerant Arabidopsis accessions confers greater heat tolerance and induces le

102 th MEGARes to identify and quantify AMR gene accessions contained within a metagenomic sequence datas

103 inct and also distinct from their definitive accessions (Def), held by the testing authorities.

104 loss-of-function mutants display allele- and accession-dependent phenotypes, revealing the functional

105 The evaluated accessions differ in several quality traits including co

106 The accessions differed significantly for all micronutrients

107 We describe a modern accession displaying increased soil exploration capacity

108 ons planted at Poplarville, Mississippi, and accessions distributed in Japan, based on the double-dig

109 genetic diversity detected among the studied accessions divided them in three groups, which are in ag

110 om the European Genome-phenome Archive under accessions EGAD00001004352 and EGAD00001002731; and by d

111 Adding shotgun genome sequences from 40 accessions enables identification of conserved core PCR

112 uencing of 183 cultivated and wild Digitaria accessions, enabling insights into genetic diversity, po

113 nd transcripts from various citrus germplasm accessions established a tight correlation between the p

114 ral variation in this process in Arabidopsis accessions, exploring Lov-1, which shows FLC reactivatio

115 for >1000 Arabidopsis (Arabidopsis thaliana) accessions focused on small variations and did not inclu

116 The top-10 accessions for each nutrient and 15 accessions, from fiv

117 conduct a comprehensive study among diverse accessions from 183 B. napus (including rapeseed, rutaba

118 Genotyping and phenotyping of 186 apple accessions from a diverse genetic background of 17 Malus

119 yzing millions of SNPs segregating among 100 accessions from a teosinte-maize comparison set and amon

120 teosinte-maize comparison set and among 302 accessions from a wild-domesticated soybean comparison s

121 216-year time series of Arabidopsis thaliana accessions from across its native range and applied spat

122 nuata, originating from a cross of 2 natural accessions from Arizona and Utah, separated by the Grand

123 We screened a tomato core collection of 398 accessions from around the world and selected seven cult

124 abolomic study was conducted in seeds of two accessions from different environments.

125 Allopolyploid accessions from either diploid genomic group did not sho

126 en the genera of Saccharum and Erianthus, 79 accessions from five species (S. officinarum, S. spontan

127 ification of sequence variants in additional accessions from quinoa and related species.

128 four flowering-time genes across the diverse accessions from the 3000 Rice Genomes Project and constr

129 e top-10 accessions for each nutrient and 15 accessions, from five countries for multiple nutrients w

130 eterogeneous with larger than expected intra-accession genetic variation.

131 Eight further accessions had amylose contents that were significantly

132 However, two accessions had grain yield of more than 1.5 t ha(-1); wh

133 In orange-stage fruit, accessions harboring both the rare and common TomLoxC al

134 Interestingly, domesticated accessions have significantly higher [A] and [T] values

135 Several citrus accessions, however, have lost the ability to produce th

136 public sources (Gene Expression Omnibus, GEO accession ID: GSE74486).

137 ease vocabulary with over 1700 new terms and accession identifiers.

138 ping these SVs in ~600 representative tomato accessions identifies alleles under selection during tom

139 Deep sequencing of 91 accessions identifies selective sweeps in cultivated app

140 pseudophakic human eyes obtained postmortem, accessioned in our center between January 1988 and Janua

141 The separation between wild and domesticated accessions in [AT] values is significantly enlarged in n

142 leaves collected from 136 representative tea accessions in China.

143 ble by selecting for higher P remobilization accessions in low P soils with genetic and location sour

144 rease observed between wild and domesticated accessions in maize and soybean.

145 lecule real-time sequencing of PacBio for 18 accessions in Solanaceae, including 15 accessions of fiv

146 ave been made to the Protein Data Bank (PDB) accessions in the 'Data availability' section, and this

147 d metabolites and 54 294 SNPs in 286 soybean accessions in total.

148 For Fe and Zn, 39 accessions, including 15 with multiple nutrients, exceed

149 ociation study evaluation of 683 common bean accessions, including landraces and breeding lines, grow

150 durum cultivars but undetected in wild emmer accessions, increased in frequency from domesticated emm

151 l sequences of the TaHRC-R allele in diverse accessions indicate that Fhb1 had a single origin, and p

152 e responses are highly variable in all three accessions, indicating that expression is not strictly c

153 leven datasets corresponding to 5 plants per accession individually and in a bulk (two sets), 10 plan

154 ling the refined grouping of the sampled tea accessions into five major clades.

155 An O. officinalis accession (IRGC101152) had lowest gene expression which

156 The accessions LA0317, LA1449, and LA1403 showed particularl

157 We further show that natural accessions lacking the PHO1 uORF exhibit higher PHO1 pro

158 of potato biodiversity, particularly Andean accessions, landraces and coloured genotypes (red or pur

159 ble) and different cultivation types (Andean accessions, landraces, breeder lines and cultivated vari

160 cal data provides insight into which Turkish accessions might be most promising as starting materials

161 f inoculating with an endophyte (E+) made an accession morphologically distinct from its registered e

162 e compound traits of twenty-two sweet cherry accessions, namely breeding lines, landraces and modern

163 vel allele, named as OsPLDalpha1-1a (GenBank accession no.

164 Streptomyces sp. PB-79 (GenBank accession no. KU901725; 1313 bp), Streptomyces sp. Kz-28

165 Streptomyces sp. Kz-24 (GenBank accession no. KY000533; 1367 bp) showed only 96.2% seque

166 5; 1313 bp), Streptomyces sp. Kz-28 (GenBank accession no. KY000534; 1378 bp), Streptomyces sp. Kz-32

167 4; 1378 bp), Streptomyces sp. Kz-32 (GenBank accession no. KY000536; 1377 bp) and Streptomyces sp. Kz

168 1377 bp) and Streptomyces sp. Kz-67 (GenBank accession no. KY000540; 1383 bp) showed ~89.5% similarit

169 The accession number for the NF-kappaB ChIP-seq data generat

170 The accession number in the Gene Expression Omnibus is GSE92

171 published, the Gene Expression Omnibus (GEO) accession number listed in the data availability section

172 NIH's Sequence Read Archive (SRA) under the accession number SRP158510.

173 RNA-sequencing accession number: GSE119547.

174 ncorporated into BioStudies and the existing accession numbers and application programming interfaces

175 ed to support the VCV (variation in ClinVar) accession numbers found in the variant-centric XML file.

176 NCBI GEO accession numbers: mRNA data (NanoString): GSE119220; mi

177 have similar dynamics in cultivated and wild accessions, numerous transcripts had expression patterns

178 essions of soybean (Glycine max) and for one accession of Glycine soja, the closest wild relative of

179 An accession of M. fusca (MAL0045) of Julius Kuhn-Institut

180 A sequencing to examine RNA from a wild-type accession of the model plant Arabidopsis thaliana and a

181 high-quality genome sequence of a cultivated accession of white lupin (2n = 50, 451 Mb), as well as d

182 g coupling identify a novel paradigm for the accession of wider natural product chemical space, accel

183 s at 1 site, 12,960 observations (each for 3 accessions of 4 cultivars x 60 plants x 2 growing cycles

184 ssions representing 11 wild Oryza species, 8 accessions of African cultivated rice, and 7 Oryza sativ

185 t tolerance among cotton species, 17 diverse accessions of allopolyploid (AD-genome) and diploid (A-

186 ranscriptomes of two synthetic autopolyploid accessions of Arabidopsis (Arabidopsis thaliana) and the

187 ined polymorphisms among the 1,135 sequenced accessions of Arabidopsis (Arabidopsis thaliana) in GRAN

188 investigated leaf senescence in 259 natural accessions of Arabidopsis by quantitatively assaying dar

189 p of >17,000 COs between the Col-0 and Ler-0 accessions of Arabidopsis thaliana COs were generally su

190 notypic and genetic variation of 252 natural accessions of Arabidopsis thaliana to conduct genome-wid

191 sing a greenhouse experiment with 35 natural accessions of Arabidopsis thaliana.

192 iveness of growth architecture among natural accessions of Arabidopsis thaliana.

193 In all studied accessions of B. hybridum, there was a reduction in the

194 In accessions of Citron, limetta, sweet lime, lemon, and sw

195 We screened 216 genetically diverse accessions of cultivated tomato and a wild tomato specie

196 distribution in genome sequences from 3,000 accessions of domesticated Oryza sativa (rice) and the w

197 m, S. robustum, S. barberi, S. sinense), six accessions of E. arundinaceus, and 30 Saccharum spp. hyb

198 or 18 accessions in Solanaceae, including 15 accessions of five wild tomato species.

199 In two accessions of limetta, a change in the core promoter reg

200 he morphological characteristics of E+and E- accessions of perennial ryegrass and tall fescue cultiva

201 cs between low- and high-acylsugar-producing accessions of Solanum pennellii revealed that expression

202 ty genome assemblies and annotations for two accessions of soybean (Glycine max) and for one accessio

203 tilevel analysis of leaf shape using diverse accessions of sweet potato (Ipomoea batatas), and uncove

204 ing-by-sequencing data for almost all barley accessions of the German ex situ genebank provides insig

205 y syndromes, we selected 559 fully sequenced accessions of the model annual species Arabidopsis thali

206 from a GWAS performed on a collection of 174 accessions of the model legume Medicago truncatula.

207 he intensive study of different species (and accessions) of both subfamilies, including their complet

208 ide panel of replicated Arabidopsis thaliana accessions outdoors and over winter to characterize thei

209 Generally, A-genome accessions outperformed D-genome cottons under salinity

210 ucosides predominated in the purple-pericarp accession, pelargonidin-based glucosides predominated in

211 ecies was exhaustively sampled here, and one accession per species was sequenced via a high-throughpu

212 he context of the wild-type and also natural accessions (phytometers), and standardized for environme

213 l and chloroplast genome sequences of quinoa accession PI 614886 and the identification of sequence v

214 Field pea accessions PI 411142 and PI 413683 increased P remobiliz

215 ry (RE) (Vaccinium virgatum Aiton), from the accessions planted at Poplarville, Mississippi, and acce

216 ailable from the Sequence Read Archive under accessions PRJNA278450, PRJNA312948, PRJNA307199, PRJNA3

217 freely available for download from NCBI SRA (Accession: PRJNA398984), the assembled and annotated tra

218 t affect protein function, and five of these accessions produced starch with no or extremely low amyl

219 ss, some of the studied landraces and Andean accessions proved to be similar enough to be considered

220 nded to display RNA-Seq data for hundreds of accessions, providing expression information for over 28

221 m collection show placement of the sequenced accessions relative to global soybean diversity.

222 A panel of banana accessions, representative of the diversity of wild and

223 lpha1 locus (3.6 Kb) was performed across 48 accessions representing 11 wild Oryza species, 8 accessi

224 among six DNA (leaf) sampling methods on 90 accessions representing a wild species (O. barthii), cul

225 genome and whole-genome resequencing of 414 accessions representing all extant species in the Citrul

226 uction during shade to sun transitions of 14 accessions representing five subpopulations from the 300

227 the genetic diversity among 97 sweet cherry accessions representing three different stages in the do

228 nfluences flowering responses of Arabidopsis accessions resulting in an interplay between promotion a

229 enetically and geographically representative accessions, revealing 4,873 genes absent from the refere

230 The identified core collection accessions rich in specific and multiple-nutrients would

231 es across genome-wide polymorphic sites than accessions sampled from the corresponding progenitor spe

232 Natural Arabidopsis accessions show considerable variation in vernalization.

233 Comparisons among the three accessions show generally high structural conservation,

234 ng flower development in wild and cultivated accessions show that truncation and deletion of tapetum

235 ntrast, comparisons between Def and E- or E+ accessions showed a number of significant differences th

236 rphological and physiological traits, cotton accessions showed highly variable responses to 2 weeks o

237 Field pea accessions showed variation in remobilization rates, wit

238 Many accessions showing higher and more variable A(max) , max

239 e identified putative hybrids, misidentified accessions, significant diversity within V. planifolia,

240 The results broadly separate the accessions studied according to their botanical race in

241 Resequencing of 52 accessions suggests that independent domestications form

242 We identified 18 accessions that are predicted to have polymorphisms in G

243 The study also identified accessions that have high relative and absolute bioacces

244 aluated the panicle morphology of 55 sorghum accessions that represent the five botanical races in th

245 rtion in the MYB10-2 promoter of red-fleshed accessions that was associated with enhanced expression.

246 inct from its registered endophyte free (E-) accession, there could be protection and ownership issue

247 cis variation at FLC has enabled Arabidopsis accessions to adapt to different climatic conditions and

248 We also subjected these accessions to an array of biotic and abiotic stresses in

249 yses of oilseed rape/canola (Brassica napus) accessions to identify genetic variation that influences

250 (length and width) in a diverse set of rice accessions under HNT stress.

251 the use of genotypic information from these accessions using a cost-effective next generation sequen

252 crossover frequency, we screened Arabidopsis accessions using fluorescent recombination reporters.

253 ility compared to prior analyses of the same accessions using genome-wide nuclear SNPs, and plastid D

254 tic diversity in a panel of 173 D. rotundata accessions using joint analysis for 23 morphological tra

255 ort a reference-grade genome of wild soybean accession W05, with a final assembled genome size of 101

256 Each accession was planted in 2016 and 2017 in 3 replicates i

257 An anthocyanins-related discrimination among accessions was also obtained based on cyanidin-3-O-rutin

258 ine map the resistance gene Sbwm1, 205 wheat accessions was genotyped using wheat Infinium iSelect Be

259 le of three traditionally used Ziziphus leaf accessions was investigated via ultra-high performance l

260 number of observed differences between E-/E+ accessions was less or similar to the number expected pu

261 te area of 710 worldwide distributed natural accessions was measured and analyzed using the genome-wi

262 A panel of 200 maturity group IV accessions was phenotyped for canopy greenness using DGC

263 n mapping population consisting of 132 peach accessions was phenotypically evaluated for MD and FDP,

264 A total of 87 lily accessions was subjected to genetic diversity analysis u

265 ation in genomic sequences among Arabidopsis accessions was the dominant contributor to AS divergence

266 Brix content range from 5.5 to 16.7% across accessions, was positively correlated to stalk diameter

267 genome-wide SNP genotyping of 736 C. arabica accessions, we analyzed the genetic diversity in the spe

268 Using RNA-seq of B. napus accessions, we define the genetic diversity and sub-geno

269 rse soybean landrace panel consisting of 279 accessions, we identified 16 candidate quantitative loci

270 0 natural Arabidopsis (Arabidopsis thaliana) accessions, we were able to not only accurately segment

271 cribed species' genetic diversity, with wild accessions well differentiated from each other and from

272 st of the divergent AS events in Arabidopsis accessions were cis-regulated by sequence variation, inc

273 Based on the SSR data, the 115 accessions were classified into seven main phylogenetic

274 The 'Rugosa Doce' and 'Rugosa' accessions were distinguished by total flavonoids and ph

275 inctions but unexpectedly, several E- and E+ accessions were distinguished from their official defini

276 Germplasm accessions were evaluated in field trials at ICRISAT, In

277 These 39 accessions were grouped into 5 clusters.

278 Fifty field pea accessions were grown in a completely randomized design

279 Both accessions were grown under controlled conditions with s

280 In total, 317 Arabidopsis thaliana accessions were inoculated with its natural Turnip mosai

281 respectively), while the 'Rugosa' and 'Pera' accessions were less acid (0.28 g 100 g(-1) and 0.33 g 1

282 The accessions were phenotyped for viral accumulation, frequ

283 e 'Rugosa Doce' and 'Doce de Patos de Minas' accessions were sweeter (20.18 g 100 g(-1) and 18.88 g 1

284 Beauv.) plants, 12 of each of two different accessions, were incubated in a growth solution containi

285 RNA-seq analyses are performed for 224 maize accessions which represent a wide genetic diversity unde

286 ed and used as reference to study 71 avocado accessions which represent the three traditionally recog

287 ucted on a single individual to represent an accession, which may be heterogeneous with larger than e

288 melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the

289 range from 279.5 to 3,101.2 L ha(-1) across accession with an average of 1,266.3 L ha(-1) which is s

290 yield range from 0.5 to 5.3 Mg ha(-1) across accession with an average of 2.2 Mg ha(-1).

291 We analyzed a natural rice population of 524 accessions with 3,616,597 SNPs to compare the genetic co

292 a collection of wild and domesticated tomato accessions with a genetically diverse population of the

293 estigated using multiple Pst strains, tomato accessions with available genome sequences, reactive oxy

294 Induction in three accessions with contrasting responses (AUS 278, NCS 771

295 This study identified field pea accessions with high PUE by determining (1) the variatio

296 scribe the local environments of Arabidopsis accessions with known collection sites encompassing a wi

297 tio in a population consisting of 369 tomato accessions with large natural variations.

298 Six accessions with strong TPP resistance (survival <10%) we

299 a pipeline to identify and remove identical accessions within and among genebanks and curate globall

300 d significant (P < 0.05) differences between accessions, years, and accession by year interaction for