ライフサイエンスコーパス: align to

1 y. yoelii contiguous DNA sequences (contigs) aligned to 14 P. falciparum chromosomes reveals marked c

2 novo assembled 207,739 transcripts, which we aligned to 14,717 high confidence protein-coding genes.

3 d by an almost continuous contig of 736 YACs aligned to 597 contigs of cosmids.

4 , while the expressed sequence tag sequences aligned to 73% of the nucleotides.

5 The available maize GSSs aligned to 75% of the FLC nucleotides used to perform se

6 hat different understandings of utility will align to a greater or lesser degree with important stake

7 h many nucleotide substitutions difficult to align to a reference sequence with existing tools, preve

8 Manually segmented prostate capsules were aligned to a BCR (-) template for statistical comparison

9 nogaster embryos (wild type and 18 mutants), aligned to a common morphological timeline.

10 Sequences were aligned to a database including >400 fungi.

11 To build DMDM, all human proteins were aligned to a database of conserved protein domains using

12 intly considers alignments of all long reads aligned to a gene and uses error profiles of individual

13 re, we show that short sequence reads can be aligned to a genome assembly containing a single rDNA re

14 e show that rhombohedral tetralayer graphene aligned to a hexagonal boron nitride substrate hosts a q

15 All sequences were pairwise-aligned to a model sequence using the Hidden Markov Mode

16 were sequenced to ~500-1000x and reads were aligned to a novel local reference genome generated with

17 When there are many transcripts aligned to a particular locus, local variation of the cl

18 S100 calcium-binding protein A4 (S100A4) was aligned to a principal axis associated with metastasis.

19 z makes it easy to display features as boxes aligned to a protein sequence with zooming functionality

20 etween the two subunits with its 2-fold axis aligned to a pseudo 2-fold axis of the protein.

21 zing variants from a de novo genome assembly aligned to a reference genome.

22 ce reads from NGS platforms, which have been aligned to a reference sequence.

23 lumn yields a higher substitution score when aligned to a related than to an unrelated column.

24 The reconstructed time-framed images were aligned to a selected reference frame using either EMT o

25 axes of these nonplanar surfaces were often aligned to a set of three color directions that were pre

26 The resulting DNA sequences can be aligned to a single family with two conserved stretches

27 teins of 200 residues or smaller, 93% can be aligned to a single template structure (with average seq

28 Each dataset contains a query RNA aligned to a target RNA (of the same family) embedded in

29 ed reads generated by high-quality libraries aligned to a transcript, but approximately 70% of them a

30 A.D.'s results indicate faces are aligned to a view- and orientation-independent face temp

31 ng from a sequencing run are first "mapped" (aligned) to a reference sequence to infer the read from

32 e mechanistic models that assume nucleotides aligning to a given reference position are sampled from

33 Aligning to a linear reference genome can result in a hi

34 None of the prostate cancer risk variants aligns to a known gene or alters the coding sequence of

35 In a typical run, a query structure is aligned to all structures in one of several databases of

36 ose-binding protein (MBP) are proposed to be aligned to allow residues in both domains to interact si

37 ibraries being the most highly enriched (31% align to an EST contig), while the HMPR clones exhibited

38 ve tools as input, the peptide sequences are aligned to an internal protein database such as UniProtK

39 sed single cells and microparticles are self-aligned to and retained without light illumination.

40 nalyses indicated inhibition constant shifts aligned to antiviral results, with S144A and A173V each

41 ddition, at least 30% of the 454-ESTs do not align to any of the approximately 648,000 extant maize E

42 Additionally because users can align to arbitrary template alignments, a feature not av

43 aled that two glutamic acids in amadoriase I align to Arg(112) and Arg(114) in amadoriase II.

44 equirement so that a long read region can be aligned to at least one contig region, including its tru

45 Sequences aligning to Balamuthia mandrillaris ribosomal RNA genes

46 es at the catalytic cleft are more optimally aligned to bind ATP and mediate phosphoryl transfer.

47 Although 34 of 36 lines aligned to bladder tumors rather than other histologies,

48 ble nuclei and determine the transition from aligning to buckling.

49 These DNA segments need to be aligned to build a PSSM.

50 C(pos)/Ly6C(neg) subsets could not have been aligned to canonical M1/M2 profiles.

51 Results of cosinor analysis of group data aligned to CBT circadian minimum revealed significant ci

52 both more highly expressed and more closely aligned to cell identity than super-enhancer analysis do

53 cleotide sequence of the human DIPP cDNA was aligned to chromosome 6; the candidate gene contains at

54 nd that gene expression profiles of 17 lines aligning to colorectal tumors and selected based on thei

55 Scan data were re-aligned to correct for movement artefacts and cross-refe

56 ctive of other genomic CTCF sites and can be aligned to create a functional consensus.

57 TIM barrel-such that their symmetry axes are aligned to create scaffolds with large cavities that can

58 ctural reference state of two protofilaments aligned to create the "agitated" protofibril as determin

59 rm an a--c crosslink, the c subunit properly aligned to crosslink to subunit a was found to contain v

60 o allows the analysis of data that have been aligned to custom genomes rather than to a standard refe

61 remove RNA left after polymerization, the RT aligns to cut 18 nucleotides in from the 5' RNA end.

62 Furthermore, when these compounds are aligned to delta 9-THC according to the proposed pharmac

63 d, the redundant copies within each read are aligned to derive a consensus sequence of their initial

64 env sequences were aligned to determine intra- and intermonkey variation ov

65 Moreover, these top hit proteins are aligned to different parts of the target protein, so tha

66 Neonatal cortical structure was aligned to differential patterns of cell-specific gene e

67 f ecosystems when global and local processes align to drive intense heating, with devastating consequ

68 erphase microtubule behavior is more closely aligned to dynein than EB1 or CLIP170.

69 o its parent protein family and subsequently aligned to each other by transferring the parent domain

70 e chromosomal DNA sequence duplications were aligned to each other by using MUMmer.

71 reakpoints shared between samples need to be aligned to each other.

72 The new probe sequence is then aligned to each target protein structure in the library

73 Locations of maximum PN concentrations were aligned to eastern, downwind jet trajectories during pre

74 e POTRA and barrel domains must be precisely aligned to ensure efficient OMP insertion.

75 efficiently separated by electronic type and aligned to ensure optimal and reproducible electronic pr

76 cessed, it is important that the spectra are aligned to ensure that the same protein intensities are

77 In multiciliated cells, BB orientation aligns to ensure coherent ciliary beating, but the mecha

78 embled genomic islands (MAGIs) that had been aligned to ESTs.

79 anized inputs from the retina and V1 must be aligned to facilitate integration.

80 ch by accurate SNP predictions in human ESTs aligned to finished and working-draft quality genomic se

81 Trial records were aligned to forearm rotation onset in order to compare th

82 At high protein concentrations, NFs align to form a nematic liquid crystalline gel with a we

83 rows that subsequently rotate 90 degrees and align to form a single longitudinal row.

84 of rP172, these nanoparticles were found to align to form linear needle-like particles that subseque

85 rials, but not the rectangle-based material, align to form simple one-dimensional channels.

86 with polyethylenimine (PEI) and SWCNTs were aligned to form a 2 x 2 junction array, functionalized w

87 tissues raising the question of how they are aligned to form a functional eye.

88 n cells and neurons in visual cortex must be aligned to form a visuotopic map, but the basic mechanis

89 nce relocation to paramagnetic nanoparticles aligned to form beadlines in a magnetic field.

90 ic phase of graphene oxide (GO) can be shear aligned to form highly ordered, continuous, thin films o

91 Three of the four mutant PrPs aligned to form intermolecular beta-sheets.

92 ral elements of the kinase domain C-tail are aligned to form novel interactions to the nucleotide and

93 Compared to Z-discs that are initially aligned to form shorter periodic dots and expanded longi

94 myosin fibers, in which myosin filaments are aligned to form stacks.

95 ses of neighboring astrocytes were spatially aligned, to form the apertures through which the bundles

96 ompact with the four helices in each subunit aligning to form a unicornate-type four-helix bundle.

97 ormation and showing that units of monomer 2 align to generate the corresponding dimer with a syn-hea

98 ing the surviving short oligonucleotides and aligning to genome assemblies from related, modern speci

99 notations, no matter the granularity, can be aligned to genomic sequences and therefore annotated by

100 ns of mRNAs using 3'-ESTs with poly(A) tails aligned to genomic sequences.

101 neural level, most CA1 neurons persistently align to geometry, and this alignment predicts heading b

102 When MS VH sequences were aligned to germline segments, about 60% of different VH

103 These sequences are multiply and locally aligned to give an anchor motif from which further chara

104 of a QAH effect in twisted bilayer graphene aligned to hexagonal boron nitride.

105 quence quality is such that 88% of the reads align to human reference sequences, allowing us to compu

106 which modules composed of tandem repeats are aligned to identify repeat-specific features.

107 as replaced with three stents telescopically aligned to improve anchoring.

108 ts with spatial and temporal expression well aligned to interventional requirements, pose difficultie

109 he most ancient duckweed genome, needs to be aligned to its chromosomes as a reference and prerequisi

110 arget sizes, more segment angle variance was aligned to kinematic deviations with the goal of maintai

111 RNAs which aligned to known microbial taxa, were significantly enri

112 Although currently best suited for aligning to localized pangenomes owing to computational

113 ies (identified using a hidden Markov model) aligning to location-relevant rather than socially relev

114 ptide sequences from MAGE-1, 2, 3, 4a, and 6 aligned to MAGE-12:170-178 were not recognized by F001-T

115 agnetism, graphene flakes can respond and be aligned to magnetic field like a ferromagnetic material.

116 We also use TM-align to match the models predicted by TASSER for solved

117 eudogenes are of processed origin and can be aligned to match the entire coding region of the functio

118 the redox centres of the three proteins are aligned to maximize the efficiency of electron transfer

119 by-step guide suitable for printing proteins aligned to micron-sized sensors and subsequent integrati

120 : GD6.5-14.5; 3: GD14.5-16.5; 4: GD0.5-16.5) aligning to milestones during human development.

121 Gate electrodes were self-aligned to minimize overlap capacitance by inkjet printi

122 Fourth, sequences aligned to miRNAs with mismatches are remapped to a refe

123 exact match to at least one RNA-Seq read; 15 aligned to more than 100 RNA-Seq reads.

124 tion timing profiles were significantly more aligned to mouse epiblast-derived stem cells (mEpiSCs) t

125 he continuation phase for the beta-band when aligned to movements, and a bias toward the synchronizat

126 at a sizable fraction of the fragments/reads align to multiple locations of the genome.

127 , a considerable fraction of the short reads align to multiple locations on the reference genome (mul

128 roaches are unable to account for reads that align to multiple locations, and hence underestimate bio

129 ity is also high: <7% of the rat contigs are aligned to multiple places in human, and 97% of all alig

130 Sequences aligning to multiple Cache Valley virus genes were ident

131 were stronger when the target frequency was aligned to neuronal best frequency.

132 dystrophic microglia and rod-like microglia aligning to neurons harbouring tau pathology were also o

133 as distinct from execution, and more closely aligned to NoGo activity, suggesting this activity contr

134 Behavioural analysis aligned to nTc confirmed this prediction.

135 f the molecules, which changes from prolate (aligned) to oblate (anti-aligned) in 300 fs.

136 lly the sequences from PDB and UniProtKB are aligned to obtain a residue-level mapping.

137 ns, the correct/incorrect mean phases became aligned to one another before they diverged and coded fo

138 e manner in which the stimulus waveforms are aligned to one another during the calculations.

139 t, where individual proteins in networks are aligned to one another, are performed to achieve higher

140 sequences during retrieval, so that they are aligned to one another.

141 ntifies how well one sequence residue can be aligned to one template residue based on context-specifi

142 realigned from a representation that was box-aligned to one that was room-aligned.

143 tter of one sequence is constrained to being aligned to only one letter of the other.

144 When in metaphase, the duplicated cores align to opposite sides of the kinetochores in a linear

145 nd the alignment must change from vertically aligned to parallel to the slab.

146 applied to the counts of RNA-seq read pairs aligned to parental references, but aligners do not alwa

147 utcomes that are more meaningful and closely aligned to participants' priorities, such as goal achiev

148 ch subthalamic and pallidal populations were aligned to phases that left beta-amplitude unchanged wit

149 In cultured cells, this capacity is tightly aligned to phosphorylation of ShcD CH1 region tyrosine m

150 and enables identification of chicken clones aligned to positions in other sequenced genomes.

151 vent-based methods then count how many reads align to predefined features.

152 or global sequence changes without having to align to previously known genomes.

153 ucratic systems but will remain most closely aligned to primary care as a concept.

154 airs detected from multiple samples are then aligned to produce a CSV file that contains the metaboli

155 tform, the resulting repeat sequences can be aligned to produce a highly accurate consensus that redu

156 ructures, which were similarly minimized and aligned to produce the 3D-QSAR models.

157 tion site is exposed and multiple interfaces align to promote FAK oligomerization on the membrane.

158 If federal and state policies were aligned to promote prairie strips, the practice would be

159 Ideally, complete domains are aligned to protein subsequences, in a 'semi-global align

160 contigs were plotted on the rice genome and aligned to QTL likelihood intervals for ratooning and rh

161 nterposed nucleus (IntA) was remarkably well aligned to reach endpoint, scaling with the magnitude of

162 d into how institutional goals can be better aligned to recognise the needs of a key hospital populat

163 Individual cryo-EM particles can be aligned to reconstruct a 3D density map of a protein str

164 to design a robust characterization strategy aligned to regulatory needs.

165 ventricular cardiomyocytes are strategically aligned to reproduce key electrophysiological features o

166 Ninety percent of mycoplasma-mapped reads aligned to ribosomal RNA.

167 ach individual, the number of mappable reads aligned to RNA references was ~5.4 million including miR

168 l by averaging the time course of the noise, aligned to saccade initiation, across all trials with sa

169 itiation factor (eIF)2alpha kinase (HRI) was aligned to sequences in the NCBI data base using ENTREZ

170 Sequences were aligned to SILVA database and Clostridiales and Erysipel

171 vie viewing whose transitions are temporally aligned to specific features of the movie.

172 neous treatment with BRAF and MEK inhibitors aligned to standard-of-care combination therapy, suggest

173 d to known folds and 58% of the residues are aligned to structures.

174 ment, where whole subgraph of one network is aligned to subgraph of another, and protein-to-protein a

175 subjected to Illumina small RNA sequencing, aligned to subtype-specific reference transcriptomes, an

176 The structure of the Orsay S domain is best aligned to T = 3 plant RNA viruses but exhibits substant

177 DES, SPALIGNER, and SPADES assembly of reads aligned to target proteins by DIAMOND show that SAUTE_PR

178 was highly specific; 90% of sequencing reads aligned to targeted loci.

179 e of this apparent sensitisation was closely aligned to that of ATP turnover, which was lower in the

180 ription start point of the proximal promoter aligns to that of mouse promoter P3 and lies within a co

181 significantly higher percentage of sequences align to the 500-bp segment upstream of the transcriptio

182 n the active site remain immobile and do not align to the changes in the substrate electric field.

183 f these cells in cancer does not necessarily align to the conventional categories.

184 estigated an average of 40% of reads fail to align to the corresponding genome, with some datasets ha

185 f these contributing mechanisms and how they align to the functional, morphological, and structural i

186 replicates, and the percentage of reads that align to the genome as well as exons.

187 cessive ('hyper') editing that do not easily align to the genome.

188 mportant role in how molecular energy levels align to the graphene Dirac point, and may significantly

189 HIV-1 matrix protein trimer unit structures align to the His-HIVCA trimer units such that residues p

190 agnostic rWGS by matching reads that did not align to the human reference genome to a database of mic

191 stimuli-responsive polymers that can aim and align to the incident light direction in the three-dimen

192 Here we show 34 immune transcripts align to the morphology of lung sections from Mycobacter

193 Two of these regions align to the putative ATP-binding domain and catalytic s

194 g highly diverged alleles completely fail to align to the reference genome.

195 ilability of floristic diversity revealed to align to the typical foraging behavior of intermediate f

196 These have been aligned to the 79,000 gene models predicted from the soy

197 that peak discrimination performance was not aligned to the adaptor but to test amplitudes 3-9 mum hi

198 the beta(1) integrin, residues 786-797, were aligned to the available PTB-peptide structures to gener

199 ntly, the paired-end reads that are properly aligned to the bovine Y sequence assembly accounted for

200 arge tilt angle are the hydrophilic residues aligned to the channel axis.

201 sive hydrogel with cell-mediated degradation aligned to the chondrogenic differentiation of human mes

202 TBB were aligned to the closest TBB surveillance schedule.

203 dentified 28 patients (4.2%) with reads that aligned to the CMV reference genome.

204 This sequence was assembled and aligned to the Columbia ecotype sequence produced by the

205 ous mammalian P450s have been identified and aligned to the corresponding residues in the substrate-h

206 These clocks are aligned to the day-night cycle by multiple environmental

207 particular, we show that 76% of Rmaps can be aligned to the de Bruijn graph in the case of human data

208 ts showed that all of the peptides sequenced aligned to the deduced amino acid sequence of either chi

209 al fibers are integrated into the device and aligned to the detection volume to improve the automatio

210 ructure, including novel spatial differences aligned to the developing chambers.

211 trol techniques has always been very closely aligned to the development of dentistry.

212 of the border tissue; this latter structure aligned to the disc margin.

213 In 23 eyes, the NCO aligned to the disc margin.

214 an additional polishing step that uses reads aligned to the draft assembly to identify necessary edit

215 movements, head direction cells must be kept aligned to the external world by sensory inputs, which a

216 When strain in a coordinate system aligned to the fibers is estimated, cross-fiber shorteni

217 ngation and formation of actin stress fibers aligned to the flow direction.

218 Reads from the initial population, when aligned to the full-length viral sequence (11,161 nucleo

219 SNPs found to be associated with colour, 35% aligned to the genome and 10% to the transcriptome.

220 of positions or a specific sequence that is aligned to the genome on the fly.

221 The resulting ambiguity sequence is aligned to the genome, identifying one template sequence

222 a transcript, but approximately 70% of them aligned to the genome.

223 transcript assembly from expressed sequences aligned to the genome.

224 g 19 tissue-specific J. regia transcriptomes aligned to the genomes.

225 GBD contains a collection of annotation data aligned to the genomic sequence.

226 s are masked to remove non-genomic sequence, aligned to the host genome and assembled into contiguous

227 We show that such sequence can be accurately aligned to the human genome and used to identify most of

228 Each resulting consensus was aligned to the human genome draft.

229 NP map with fosmid end-sequence pairs (ESPs) aligned to the human genome reference sequence, we have

230 The mouse contigs were aligned to the human genome sequence on the basis of 51,

231 Transcripts were aligned to the human hg19 reference genome and counted w

232 of novel coding sequences that could not be aligned to the human reference genome, which include at

233 orphogen, generates the polonaise movements, aligned to the induced midline, but disturbs the stereot

234 rangement of vertical cells is tonotopic and aligned to the innervation pattern of the AN.

235 Digital dental cast models were aligned to the interocclusal records.

236 ining SNP analysis of whole-genome sequences aligned to the JH1 interval and subsequent SNP validatio

237 o 25% divergent across the target sites when aligned to the Liberian Lassa virus genomes.

238 delta and phi bonds, the metal orbitals are aligned to the ligand orbitals in a "head-to-head" or "s

239 a single voxel (12 x 15 x 25 mm(3) = 4.5 ml) aligned to the long axis of each hippocampus in nine pro

240 particular, it apportions the multiple reads aligned to the many LINE-1 instances in the genome into

241 tionally, a significant proportion of EV RNA aligned to the microbiome and maltreatment during infanc

242 Sequencing reads were aligned to the National Center for Biotechnology Informa

243 hus the animal-vegetal axis of the oocyte is aligned to the nuclear axis of the bouquet.

244 tion of subsequent short sequence reads that aligned to the O. nubilalis reference mitochondrial geno

245 When the data are temporally aligned to the onset of movement, visual contrast sensit

246 on was determined from peri-event histograms aligned to the onset of the behavior.

247 While neither state is optimally aligned to the OPSA, each input state is equally amplifi

248 Thus, inputs aligned to the optimal phase of the beta EEG in the moto

249 etation and to ensure that study methods are aligned to the overall study objectives.

250 bases in length, which can be unambiguously aligned to the phi X 174 reference genome, and demonstra

251 SPW-R-triggered fMRI maps show that ripples aligned to the positive peak of their SPWs have enhanced

252 ential for optimising exercise interventions aligned to the prevention and onset of disease.

253 Atomic models of the ribosomal subunits were aligned to the programmed ribosome from Thermus thermoph

254 g fragment-bound microenvironments, is first aligned to the query target cavity by a computer vision

255 ed PCR, and resulting product sequences were aligned to the recently published tomato genome.

256 Both test groups were aligned to the reference by applying a section-based bes

257 to ABACAS is a set of contigs which will be aligned to the reference genome, ordered and orientated,

258 bscura subclade using 18 resequenced genomes aligned to the reference genome.

259 ted from sequence reads that were abnormally aligned to the reference genome.

260 vides a comprehensive catalog of transcripts aligned to the reference sequence.

261 Sequencing reads were processed and aligned to the reference to identify possible single-nuc

262 rons and octavolateral efferent neurons were aligned to the reticulospinal scaffold by mapping neuron

263 Fundus-controlled perimetry data were aligned to the SD-OCT data to extract layer thickness an

264 rge transmission through a C-shaped aperture aligned to the sharp apex (<10 nm radius) of a template-

265 The remaining 31.1% of reads were aligned to the sheep reference genome, including 13.57%

266 ormance-optimizing regulation of variability aligned to the slow performance-degrading memory fluctua

267 d a periodic pattern cycling at ~10 Hz phase-aligned to the sound.

268 ynchronization phase for the gamma-band when aligned to the stimuli.

269 nning of the task, especially when LFPs were aligned to the stimuli.

270 bserving entire nanometer-scale nuclei grown aligned to the substrate on pinhole-free graphene confir

271 dentally, the plane of cell division becomes aligned to the surface plane of the embryo and oriented

272 The SPECT images were first aligned to the Talairach-Tournoux atlas and then analyze

273 mes that have been sequenced, annotated, and aligned to the target genome provide evidence of existen

274 The reads are then aligned to the targets to discover variants.

275 The poly(dimethylsiloxane) channel is aligned to the transducers on the top surface of the sub

276 chical models of the isotopic niche, closely aligned to the trophic niche, reveal the degree of segre

277 ne position, with head extended, upper limbs aligned to the trunk, and knees flexed.

278 It included 353 amino acids that aligned to the U. ramanniana DGAT2A protein and a 243-am

279 Sequence reads were aligned to the UMD3.1 bovine reference genome and differ

280 from our results that area 19 in cat is more aligned to the ventral stream and area 18 to the dorsal

281 e ventricular wall, with GFAP-positive cells aligned to the ventricle.

282 ligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x 76 bp paire

283 Reads not aligning to the human genome were analyzed using an in-h

284 in without any measurable novelty correlates aligning to the human MMN.

285 ad only a reference database is required for aligning to the query sequences, making our method easil

286 the Xenopus larval skin, where ciliary flow aligns to the anterior-posterior (A-P) axis.

287 to have a rough estimate of where the contig aligns to the reference genome, specifically, by identif

288 itional galactose-binding site in vSGLT that aligns to the S1 site of LeuT.

289 PyMOL and receive a stream of search results aligned to their query within a few seconds.

290 onnected if their preferred orientations are aligned to their topographic separation.

291 utation simulator and the perfect cDNAs were aligned to them using Pairagon and 12 other aligners.

292 astomeric micropillars and microspheres self-aligned to them, could widen the scope of soft material-

293 inciples that determine how circadian clocks align to these external cycles are not well understood.

294 Ancestry aligned to these regional blocs, overlapping with both t

295 ed in a specific gene to visualize the reads aligned to this gene to estimate cell-specific preferenc

296 e internal genes of ca B/Ann Arbor/1/66 were aligned to those of other influenza B viruses.

297 The piRNAs were aligned to transposons with a maximum of three mismatche

298 Some uninstructed movements were aligned to trial events.

299 ays with greater than 98.5% of the nanowires aligned to within +/-1 degrees of the combing direction.

300 sion tensor calculated from the NMR data are aligned to within 12-23 degrees of the principal axes of