ライフサイエンスコーパス: alignment

1 ting polymer to preserve their structure and alignment.

2 xel level and reconfigured following initial alignment.

3 and Fgf8 demonstrates genetic synergy in OFT alignment.

4 th thinner, loosened, and disconnected fiber alignment.

5 to initiate a broader debate and stakeholder alignment.

6 funnel excitons into one layer with a type I alignment.

7 ) as anchors and generates an optimal global alignment.

8 inates their focal adhesion distribution and alignment.

9 tter than the results secured using sequence alignment.

10 and demonstrate up to 88% improvement in m/z alignment.

11 hase-to-anaphase transition after chromosome alignment.

12 duals aged >=2 y and metrics exist to assess alignment.

13 itself as a microscopic pattern of molecular alignment.

14 through high-throughput sequencing and read alignment.

15 activation imbalance, movement patterns, and alignment.

16 urring the computational cost of traditional alignment.

17 tween hydrodynamic interactions and external alignment.

18 few nanometers may be sufficient to observe alignment.

19 ematic biases in whole-genome sequencing and alignment.

20 alpha-helical conformation and transmembrane alignment.

21 ted natively disordered regions and sequence alignments.

22 confirm that our method builds high-quality alignments.

23 commonly used aligners to calculate optimal alignments.

24 es concern: (1) the precision of retinotopic alignment, (2) the amplitude of the postsynaptic local f

25 e dependence of the TBG phase diagram on the alignment(4,6) and thickness of the insulating hexagonal

26 this pathway correlates with collagen fiber alignment, a marker of increasing ECM stiffness.

27 measure of gene-structure based on multiple alignments across vertebrates of homologs of AD-associat

28 Data Bank to perform sequence and structural alignments, active-site elements were identified, showin

29 Then, it uses a computer vision image alignment algorithm (image registration) to fully automa

30 he validity and robustness of the 3-step map alignment algorithm as a predictive tool and confirms th

31 Here we show the adaptation of an alignment algorithm, originally developed for vibrationa

32 ompatible with efficient dynamic programming alignment algorithms, we develop an approximate algorith

33 across run order is often not considered by alignment algorithms.

34 ified), accompanying with the increasing CGD alignment along [100].

35 come these challenges, we have used sequence alignments, an anaerobic purification method, iron quant

36 exhibited more spatially correlated F-actin alignment and a higher rate of detachment under mechanic

37 results in capabilities such as linear guest alignment and accessible channels, both of which are obs

38 In plants, the alignment and assembly of the light-harvesting protein m

39 blished for conventional chemicals to ensure alignment and avoid duplication.

40 The synergy of favorable band energy alignment and concerted cascade interfacial carrier extr

41 e moments obtained from threshold fields for alignment and directional cross sections estimated from

42 andling of parameters that describe variable alignment and dynamic scaling encountered with magnetica

43 HPV genotyping algorithms use a simple read-alignment and filtering strategy that has difficulty han

44 Sequence alignment and homology modeling showed distant homology

45 models from structure prediction to sequence alignment and homology search by developing what we call

46 Joint immobilization decreases collagen alignment and increases adipogenesis.

47 Sequence alignment and molecular structure analysis of the HAs we

48 In contrast to the wide range of global alignment and motif search tools, there is still a lack

49 uantification method to assess the degree of alignment and organization between maps, allowing inter-

50 scheme for the routine analysis of IR laser alignment and power through the fiber and into the dual

51 tochore is essential for accurate chromosome alignment and proper chromosome segregation.

52 g stage, resulting in better peak detection, alignment and quantification.

53 We present a mass alignment and recalibration method that is specifically

54 ding algorithms and a model for simultaneous alignment and recombination.

55 y the cohesin complex ensures their accurate alignment and segregation during cell division.

56 Errors in the alignment and structure of the siRNN and in the structur

57 o pre-filter the reference database prior to alignment and then process both uniquely aligned and mul

58 iants from the general population into these alignments and compared their distribution with 76,153 m

59 nce constraint based on multi-species genome alignments and genome-wide maps of epigenomic marks and

60 ross species, we performed multiple sequence alignments and statistical coupling analysis on all iden

61 of the three methods showed deeper sequence alignments and the integration of domain-based contact p

62 Thanks to these alignments and to the measurement of the (204)Pb isotope

63 chromosomes, defects in metaphase chromosome alignment, and elevated rates of chromosome missegregati

64 ions between sites in deep multiple sequence alignments, and these pairwise couplings have improved 3

65 Here, we present a label-free m/z alignment approach that is compatible with multiple inst

66 sposable element (TE) polymorphism via split alignment approaches, which has provided important insig

67 oard, rendering a modular system where fiber alignments are maintained over months.

68 gnment exceeded both BSC based on anatomical alignment as well as a standard Within Subject Classific

69 pe predictions from metagenomic data rely on alignments, assembly, extensive pruning, taxonomic profi

70 Accurate chromosome alignment at metaphase facilitates the equal segregation

71 ately, and quantitatively measure chromosome alignment at metaphase will facilitate understanding of

72 rise to compatible electronic band structure alignment at their interfaces to ensure enhanced photoac

73 -concurrency hardware to generate short-read alignments at high speed.

74 We present sequence and structure level alignments at isoform-level and make this information pu

75 Alignment-based approaches are often considered accurate

76 , the performance of lightweight mapping and alignment-based approaches varies significantly, and hig

77 talign, that performs efficient and accurate alignment-based metagenomic profiling.

78 d specificity for read-binning than sequence alignment-based methods, also executing in less time.

79 cological coexistence theory to show how the alignment between different forms of niche opportunity a

80 Alignment between medical school and health system goals

81 effect resulting from the interfacial polar alignment between monolayer MoS(2) and a neighboring fer

82 ' and 'meroplankton' lifeforms showed strong alignment between surveys and coherent regional-scale tr

83 g in widely varying nomenclature and limited alignment between taxonomies.

84 ded by OEEFs is microscopic control over the alignment between the molecule and the applied field.

85 ex-wide transcriptomic analysis shows direct alignment between timescales and expression of excitatio

86 In this work we show that the Type-II band-alignment between tungsten diselenide and chromium triio

87 n time is spent in determining optimal local alignment between two sequences.

88 I argue that failure to take the alignment between verbal and statistical expressions ser

89 rs in the assembly by using information from alignments between reads and the assembly (i.e. read-to-

90 STAR3D and designed to report multiple local alignments between two RNAs.

91 to higher rates of systematic sequencing and alignment bias that limit accuracy, resulting in false p

92 ial cell adhesion, shear stress-induced cell alignment, blood pressure measurements, and flow-induced

93 es in the intralayer excitons with a type II alignment, but it will funnel excitons into one layer wi

94 ry string alignment function (x), an implied alignment can be generated to describe the alignment of

95 relaxed bwa parameter settings or filter bwa alignments can also reduce bias but can have lower sensi

96 is questions the validity of curvature-based alignment (CBA) methods for in vivo imaging data.

97 to other research works on protein structure alignment/comparison due to lack of real applications as

98 Here, using the 3-step map alignment computational model, we predict and validate i

99 rcadian alignment (interaction of "circadian alignment condition" vs. "day", mood: p < 0.001; well-be

100 rcadian alignment (interaction of "circadian alignment condition" vs. "day", mood: p = 0.002; well-be

101 ing each node of [Formula: see text] with an alignment context using (x), in a post-order traversal,

102 An interactive alignment coverage viewer can help in the validation of

103 ledge the largest multiple vertebrate genome alignment created so far.

104 truction, which has homologous sequences and alignments created from multi-sources of whole-genome an

105 Alignment cues also induced myofibroblast differentiatio

106 e of the substrate as well as to each other (alignment direction).

107 to augment existing therapies for oculomotor alignment disorders.

108 RNAP that explain promoter melting, template alignment, DNA scrunching, abortive synthesis, and trans

109 ss distantly related species, where sequence alignment fails, and the model highlights specific nucle

110 Fovea-to-disc alignment (FoDi) software of the spectral-domain optical

111 iety of magnets that exhibit nearly parallel alignment for neighbouring spins, but theoretically skyr

112 e results, a method to assess distributional alignment for ultra-high-dimensional pixel distributions

113 We find that alignments for several long non-coding RNAs previously s

114 Our proposed alignment-free approach provides higher accuracy in pred

115 Our results also suggest that alignment-free computational methods sometimes fail to d

116 we present Seeker, a deep-learning tool for alignment-free identification of phage sequences.

117 Alignment-free methods for sequence comparisons have bec

118 -based feature frequency profile method, an "alignment-free" method, gave the most topologically stab

119 btain stable mode-locking during a long time alignment-free, a semiconductor saturable absorber is on

120 Alignment-free, stochastic models derived from k-mer dis

121 ing of length at most k, and a binary string alignment function (x), an implied alignment can be gene

122 Following peak detection, alignment, grouping, and blank subtraction, 3303 feature

123 , where the average TM-score of the template alignments has over 7.5% increases with the use of the n

124 eral-purpose software tools for finding such alignments have been released only recently and their de

125 PA), functional connectivity, and functional alignment, have become powerful tools in cognitive neuro

126 ght (OR: 1.02, 95% CI: 1.01-1.04) and ocular alignment (heterophoria vs. orthophoria, OR: 2.20, 95% C

127 ex (OR: 0.98, 95% CI: 0.96-1.00), and ocular alignment (horizontal heterophoria vs. orthophoria, OR:

128 orientation can efficiently orchestrate cell alignment in growing epithelium.

129 ate that CcfM promotes motility and magnetic alignment in structured environments, and thus likely co

130 ole in RNA priming by aiding template strand alignment in the active site for high-affinity binding o

131 tified and modeled a principle of visual map alignment in the midbrain involving the mapping of the r

132 atterns in scapulae along with some abnormal alignment in the upper quarter, which may contribute to

133 ic structure and appropriately designed band alignment in this layered ferroelectric heterostructure

134 Pb isotope ratios showed notable alignments in binary mixing plots, demonstrating the dis

135 eads and the assembly (i.e. read-to-assembly alignment information).

136 erate densities and a weak polar bias in the alignment interaction, nematic bands show a local symmet

137 ys of misalignment, as compared to circadian alignment (interaction of "circadian alignment condition

138 s compared to when they were under circadian alignment (interaction of "circadian alignment condition

139 generated 2871 gene-family protein sequence alignments involving 9990 genes and performed missense v

140 Lack of proper metaphase alignment is an indicator of defective chromosome congre

141 Read alignment is central to many aspects of modern genomics.

142 ently asymmetric features to correctly guide alignment is challenging.

143 terial systems where high-resolution surface alignment is impractical.

144 to decide whether or not performing sequence alignment is necessary.

145 however made difficult by variations in beam alignment, laser intensity, and sample conditions.

146 -ray structure) using only N-H RDCs from one alignment medium.

147 proved performance of our proposed selective alignment method and suggest best practices for performi

148 etected in these datasets, likely due to the alignment method used.

149 We also introduce a new alignment methodology, called selective alignment, to ov

150 ld fixed, the effect of choosing a different alignment methodology, or aligning reads using different

151 Classic alignment methods such as in the popular XCMS package of

152 arks, where we can compare directly to exact alignment methods that capture nested RNA base-pairing c

153 demultiplexing, overlap paired-end merging, alignment, MIP-arm trimming, variant calling, coverage a

154 uses an accurate three-dimensional molecular alignment model that predicts residual dipolar couplings

155 With semiglobal and local alignment modes and affine gap and quality-scaled mismat

156 Highly divergent sites in multiple sequence alignments (MSAs), which can stem from erroneous inferen

157 n the availability of deep multiple sequence alignments (MSAs).

158 iCn3D can display structure-structure alignments obtained from NCBI's VAST+ service.

159 But, brute force alignment of 3D data is a compute intensive search probl

160 d alignment can be generated to describe the alignment of a dynamic homology for [Formula: see text].

161 package only requires the multiple sequence alignment of a protein for inferring the co-evolutionary

162 It can also display the alignment of a sequence with a structure as identified b

163 gation of cells and a robust circumferential alignment of actin bundles.

164 Moreover, existing tools can not perform alignment of amino acid sequences, which could prove use

165 is believed essential for the formation and alignment of beta-phase PVDF, where strong intermolecula

166 igins of the effects in an under-constrained alignment of category exemplars, rather than misaligned

167 duced the numbers of cell extensions and the alignment of collagen fibrils.

168 lexity of poaching is vital to the effective alignment of conservation practice and social justice.

169 Alignment of DNA sequences from an unrelated Ashkenazi i

170 Further, alignment of enriched peptides after affinity selection

171 s within the graphene sheet and improves the alignment of graphene platelets, resulting in much highe

172 roduces a significant change in the relative alignment of individual Nav1.5 alpha-subunits, but the c

173 s enhancement deriving it from the favorable alignment of interfacial energy levels of DMASnBr(3) and

174 ngly digital, and we review the need for the alignment of international strategies for the regulation

175 ny of these applications heavily utilize the alignment of long nucleotide sequences to assembly graph

176 and subtomogram averaging (three-dimensional alignment of macromolecules in a complex sample).

177 product development processes to support the alignment of manufacturing, global policy, and program i

178 Alignment of mass spectra among different samples prior

179 evices, including the requirement for proper alignment of material energy levels and the need to proc

180 scaling methods that are able to improve the alignment of methods used in microplastic research.

181 ge value obtained by assuming perfect, polar alignment of molecular dipoles in the nematic.

182 We describe results from an alignment of more than 600 amniote genomes, which is to

183 eprecipitation and subsequent attachment and alignment of nanocrystals.

184 ence-dependent plasticity contributes to the alignment of networks spanning retina to thalamus to cor

185 o the nuclear spin density and the degree of alignment of nuclear spins with applied static magnetic

186 Strong epitaxial alignment of PbI(2) monolayers with the underlying graph

187 Such practice can result in errors in the alignment of peaks, which cannot be corrected by post ho

188 s approach) has the potential to improve the alignment of PET and CT images.

189 would offer new ways to assess the degree of alignment of protein structures, which cannot be monitor

190 sequencing experiments typically rely on the alignment of reads to a reference sequence.

191 Seasonal co-occurrences (alignment of seasonal peaks) and synchronization (simila

192 tures that is domain independent, supporting alignment of sequences from both genomes and proteins.

193 We find precise alignment of sister chromatids at centromeres.

194 hter cells, while maintaining close parallel alignment of sister chromatids.

195 ive Cactus, which enables the reference-free alignment of tens to thousands of large vertebrate genom

196 m the RefSeq is mapped based on a nucleotide alignment of the full sequence to a covariance model.

197 a function of pH by monitoring the degree of alignment of the interfacial water molecules and the cor

198 The geometric alignment of the lobes indicates that they were a co-orb

199 ificant practical challenge regarding the co-alignment of the magnetic and ultrasound fields.

200 ding of flexible molecules to ice is not the alignment of the molecule to the surface or the initiati

201 he TB19 Fab with CD73 reveals that it blocks alignment of the N- and C-terminal CD73 domains necessar

202 or the observed defects causing insufficient alignment of the OF margins in Nf2 mutants and failure t

203 otating flocks, with either polar or nematic alignment of the particles.

204 an H-type pseudoknot structure with coaxial alignment of the stem-loop helix (P1) and the pseudoknot

205 stigations, we constructed a structure-based alignment of the transmembrane domains of 120 TRP channe

206 ible by breaking the conventional horizontal alignment of the two-dimensional layers of the MXene Ti(

207 reactants, but with the extent of rotational alignment of their two cyclopentadienyl ligands.

208 a, which are called Rmaps, make assembly and alignment of them challenging.

209 ks (node-coloured graphs) and builds a local alignment of them.

210 l experience, experience is critical for the alignment of these early representations.

211 Cross-species alignment of this cell cluster with a well-annotated mou

212 ified ~ 1 million fewer homozygous SNPs than alignment of those same sequences to the more-distant GR

213 ugation effects due to its three-dimensional alignment of three aromatic phenylene units, separated b

214 high-amplitude stretch induces supracellular alignment of tissue to redistribute mechanical energy be

215 We generated alignments of 72 chloroplast genes and 7621 homologous n

216 d antiparallel (antiferroelectric) collinear alignments of electric dipoles.

217 hese heuristics can fail to find the optimal alignments of reads.

218 We investigate the influence of mapping and alignment on the accuracy of transcript quantification i

219 pends on many factors, such as the choice of alignment or mapping method and the quantification model

220 gonucleotides was observed, indicating their alignment over the stationary phase.

221 We show that changes in cell shape and alignment over time in the Drosophila germband predict t

222 ), refractive error (P = .36), binocular eye alignment (P = .90), or stereoacuity (P = .45).

223 ation, Arioc computes two million short-read alignments per second in a four-GPU system; it can align

224 that stretch-induced nuclear elongation and alignment perpendicular to the stretch vector are depend

225 Combining sequence alignment, probability analysis, and binding free energy

226 s networks, and we formulate it as a network alignment problem.

227 aches in solving sequence to genome assembly alignment problem.

228 Cactus(6), a reference-free multiple genome alignment program, has been shown to be highly accurate,

229 ge vertebrate genomes while maintaining high alignment quality.

230 ESTRO provides functions for pre-processing, alignment, quality control, expression and chromatin acc

231 into the LCE to enable processing (director alignment, remolding, and welding).

232 efficient approaches to oligomeric assembly alignment/retrieval.

233 ling of breath analysis involves processing, alignment, scaling, and clustering of thousands of featu

234 est from the user and performs a basic local alignment search tool (BLAST) search against the genome

235 Multiple sequence alignment showed high conservation of amino acids of thi

236 A quantitative evaluation of distributional alignment shows 60%-78% mutual-information score between

237 his presents an opportunity for DNA sequence alignment software to exploit high-concurrency hardware

238 ts ten times faster than comparable CPU-only alignment software.

239 ined a further 1.8x-2.9x increase in overall alignment speeds.

240 rivial signatures from discordant paired-end alignments, split-reads and read depth information to im

241 this paper, we present ADEPT, a new sequence alignment strategy for GPU architectures that is domain

242 a hydrodynamic theory for agents with mixed alignment symmetries, which captures the experimentally

243 sed too heavily on simulated data, where the alignment task is often simpler than in experimentally a

244 r, can compute WGS (whole-genome sequencing) alignments ten times faster than comparable CPU-only ali

245 use a blended sequence- and structure-based alignment that accounts for structure conservation in lo

246 cher-type bacteria with polydomains of local alignment that exhibit spontaneous correlated motions, s

247 sensitive heterostructures with desired band alignment, three orders of magnitude enhancement of the

248 ent treatments for strabismus involve ocular alignment through surgical or optical methods and may in

249 al axes were identified and used to quantify alignment through the hip-knee-ankle angle (HKAA) and fe

250 r speed XAEM utilizes quasi-mapping for read alignment, thus leading to a fast algorithm.

251 In the group with alignment to a back-calculated axis (49%), the UDVA was

252 Using sequence alignment to compare more than 12,000 pairs of progress

253 that leverages a reference-free whole-genome alignment to identify orthologous regions in greater num

254 e mitochondria were enlarged and had reduced alignment to neighboring inner-segment mitochondria.

255 The postoperative UDVA when performing alignment to the preoperative calculated axis (51%) was

256 d survey scans in a reference experiment and alignment to those scans during subsequent experiments.

257 kov model (pHMM), (ii) uses read-to-assembly alignment to train the pHMM with the Forward-Backward al

258 , while a microtubule guidance system allows alignments to be steered by environmental and developmen

259 tabase search to fully exhaustive gapped DNA alignment, to best fit their analysis needs and computat

260 new alignment methodology, called selective alignment, to overcome the shortcomings of lightweight a

261 rom our 'Tool to infer Orthologs from Genome Alignments' (TOGA) software with de novo and homology ge

262 man fecal microbiomes when using DIAMOND, an alignment tool that is up to 20,000 times faster than BL

263 icle, we developed a local RNA 3D structural alignment tool, named LocalSTAR3D, which was extended fr

264 Among all the global alignment tools for RNA 3D structures, STAR3D has become

265 ce databases and can select one of three DNA alignment tools, ranging from ultra-fast low-RAM k-mer-b

266 lds on chromatographic feature detection and alignment tools.

267 etter accuracy and coverage than other local alignment tools.

268 search tools, there is still a lack of local alignment tools.

269 termind variants and three new multi-species alignment tracks.

270 under conditions of SABRE in shield enables alignment transfer to heteronuclei, SABRE-SHEATH) result

271 Here, we introduce ClipKIT, an alignment trimming software that, rather than identifyin

272 rmative sites provide a robust framework for alignment trimming.

273 gen fibers adopted a more linear anisotropic alignment under compression, a collagen signature common

274 hain growth as well as locally enhanced bond alignment under high electric field.

275 As SneakySnake does not replace sequence alignment, users can still obtain all capabilities (e.g.

276 date no method was able to both perform the alignment using the original expression space and genera

277 nce are validated with nucleotide-to-protein alignments using BLAST.

278 : In visual interpretation, the rate of good alignment was 13 of 21, 13 of 23, and 18 of 21 for the P

279 Improved alignment was demonstrated.

280 ual comparison with PET/ex, the rate of good alignment was increased in 1 of 10 and 7 of 10 cases for

281 ative structure and sequence profile-profile alignments, we quantify the similarity between proximal

282 sed on bioinformatic clustering and sequence alignments, we selected seven fungal AA9 LPMOs that diff

283 On the basis of sequence alignments, we show that the structural features of the

284 ombinant regions of a 68-genome sarbecovirus alignment were removed with three independent methods.

285 to be significantly more accurate than local alignment which is widely relied upon for taxonomic clas

286 650 genes (as of June 2019) are presented in alignment with an annotated histological atlas and can b

287 and C(1) symmetry all exhibited anisotropic alignment with an edge-on orientation and molecular pai-

288 filtrating immune cell profiles demonstrated alignment with clinical observations and validated the c

289 of products already meeting the target, and alignment with existing, relevant targets.

290 son with capillary flow model revealed great alignment with experimental data and greater correlation

291 H-bonding within the active site for proper alignment with MutY catalytic residues.

292 ntions to improve air quality can also be in alignment with policies that benefit community and trans

293 was used to determine cost-effectiveness, in alignment with the American College of Cardiology/Americ

294 with T2DM to reduce risks for CKD and CVD in alignment with the clinical trial entry criteria.

295 hanism of action of RUTI and INH are in good alignment with the results coming from past clinical pha

296 lable clinical outcomes, expert opinion, and alignment with work done by other organisations.

297 Circadian rhythmicity demonstrated phase alignment within functional phenotypes.

298 etic elements and trigger ferromagnetic spin alignments within the antiferromagnetic [Gd(2)C](2+) lat

299 for biological sequence homology search and alignment work with primary sequence alone, neglecting h

300 xist to identify biases during sequencing or alignment, yet not many tools exist to interpret biases