ライフサイエンスコーパス: amino acid composition

1 called PseKRAAC (the pseudo K-tuple reduced amino acids composition).

2 prion protein (PrP(C)) molecules varying in amino acid composition.

3 A-DNA divergence gap patterns and TI peptide amino acid composition.

4 uence does not reveal mutations altering its amino acid composition.

5 dn/dc of unmodified proteins based on their amino acid composition.

6 that the observed effects are independent of amino acid composition.

7 ins attached to functional domains of normal amino acid composition.

8 Yeast prion formation is driven primarily by amino acid composition.

9 complete sequence coverage regardless of the amino acid composition.

10 ains, explaining why ADs often have a biased amino acid composition.

11 ing the CRS motif with respect to charge and amino acid composition.

12 lecular species and that calculated from the amino acid composition.

13 an important role in regulating fetal plasma amino acid composition.

14 gistic changes in overall genome content and amino acid composition.

15 B) or non-TMB on the basis of whole sequence amino acid composition.

16 s orthologs share an unusual, glutamine-rich amino acid composition.

17 zing the gene product composition and pseudo amino acid composition.

18 tion/deletion events while preserving repeat amino acid composition.

19 nal domain composition as well as the pseudo amino acid composition.

20 n vitro could be predicted entirely based on amino acid composition.

21 he) and its application individually on must amino acid composition.

22 nality of PR without affecting the essential amino acid composition.

23 to attach to all polypeptides, regardless of amino acid composition.

24 al criteria such as hazelnut specificity and amino acid composition.

25 lso developed using ML-SMOTE and grey pseudo amino acid composition.

26 -seq, exon array, protein docking and pseudo-amino acid composition.

27 n New Zealand influenced protein content and amino acid composition.

28 e preference for chain length or neighboring amino acid composition.

29 no acid residues in length regardless of the amino acid composition.

30 in total protein content or protein-derived amino acid composition.

31 s affected by both codon biases and specific amino acid composition.

32 ast-squares minimization analysis applied to amino acid compositions.

33 ine fragments (LMWPs) of various lengths and amino acid compositions.

34 differ primarily in size but exhibit similar amino acid compositions.

35 IL internal standards of varying lengths and amino acid compositions.

36 epeats and regions with significantly biased amino acid compositions.

37 teria likely reflects common biases in their amino acid compositions.

38 provide (1) a platform to directly determine amino acid composition, (2) an input for database search

39 at elongation stages, i.e., codon usage and amino acid composition (5.3-15.7% and 5.8-11.9% of the t

40 The amino acid composition (AAC) based SVM model had an accu

41 The analytical benefit of these specific amino acid composition (AAC) ions is to restrict the dat

42 ter [10, 12] display strong heterogeneity in amino acid composition across sites and taxa and that no

43 y sites resulted in subclones with different amino acid compositions across disease events, yet the v

44 t-ER organelles show striking asymmetries in amino acid compositions across the bilayer that is linke

45 ) interaction was not sequence-specific, but amino acid composition affected binding.

46 Encouraged by the success of pseudo-amino acid composition algorithm, we developed a freely

47 re disclosed that certain differences in the amino acid composition along the intramolecular interfac

48 mong sites and captures spatial variation in amino acid composition along the secretion signal.

49 y similar to antimicrobial peptides in their amino acid composition, amphipathic design, cationic cha

50 by mass spectrometry, Edman degradation, and amino acid composition analyses.

51 The amino acid composition analysis on the proteins, which w

52 The amino acid composition analysis showed that all three tr

53 Furthermore, amino acid composition analysis, coupled with scanning e

54 and histidine modification as determined by amino acid composition analysis.

55 tal prediction accuracy reached to 71.8% for amino acid composition and 77.0% for amino acid pair com

56 to predict the subcellular location based on amino acid composition and amino acid pair composition.

57 uctures of the CDR-H3 base and loop, and the amino acid composition and average hydrophobicity of the

58 eeding could support elicitation, to improve amino acid composition and be considered as a tool for v

59 main was randomly shuffled while keeping the amino acid composition and C-terminal domain unchanged.

60 was investigated by the determination of the amino acid composition and calculation of several nutrit

61 different CDR-H3 diversities by varying the amino acid composition and CDR length.

62 Depending on their amino acid composition and chain length, binding propert

63 mpass 19 amino acids, and only differ in the amino acid composition and charge at the six most carbox

64 ps 1 and 2, caused by modulations in length, amino acid composition and charge can play an important

65 lm and vesicle formation is dependent on the amino acid composition and charge of the peptides.

66 ough other components of dairy foods such as amino acid composition and conjugated linoleic acid may

67 CagY is distinguished by unusual amino acid composition and extensive repetitive sequence

68 (FPI) was extracted from flaxseeds, and its amino acid composition and functional properties (solubi

69 reate random coding sequences with specified amino acid composition and GC content for the purpose of

70 y that enables precise positional control of amino acid composition and incorporation frequencies.

71 and functional evidence to suggest that the amino acid composition and length of the chemokine amino

72 Here, we show that the amino acid composition and length of the IDL affects the

73 neration of substrate libraries of arbitrary amino acid composition and length that are self-renewing

74 significantly from Fab-protein interfaces in amino acid composition and light-chain participation.

75 t-exposed loops were diversified in terms of amino acid composition and loop length.

76 for phase separation depends on the overall amino acid composition and not the precise sequence of N

77 nfolded state energies are dependent only on amino acid composition and not the specific arrangement

78 l model of molecular evolution predicts that amino acid composition and nucleotide composition are dr

79 ng a wide range of lengths (33-300 residues) amino acid composition and number of secondary structura

80 first- and second-order statistics regarding amino acid composition and pairing at different relative

81 nd that the two differ substantially in both amino acid composition and protein secondary structure.

82 using small angle X-ray diffraction (SAXS), amino acid composition and racemization analyses.

83 The amino acid composition and sequence complexity of SR pro

84 dered proteins are highly dependent on their amino acid composition and solution conditions, especial

85 Thus, the amino acid composition and stereochemistry of ATCUN meta

86 aracteristics of osteopontin with respect to amino acid composition and susceptibility to thrombin cl

87 hat allow the direct characterization of the amino acid composition and the protein secondary structu

88 Fractions showed different amino acid compositions and angiotensin I-converting enz

89 ics program is based on searching for biased amino acid compositions and for particular protein motif

90 The amino acid compositions and sequences were determined by

91 Taking amino-acid composition and amino acid pair composition i

92 e a preferred repertoire in terms of length, amino acid composition, and average hydrophobicity.

93 adult cells, the length distribution, global amino acid composition, and charge distribution of the C

94 are CDR3 structural features such as length, amino acid composition, and unique amino acid residues a

95 osition, quite similar to the PseAAC (pseudo amino acid composition) approach widely used in computat

96 The amino acid compositions are broadly similar to those of

97 L-NH(2) (3F-2), were designed using the same amino acid composition as 3F(3) and 3F(14).

98 ns formed by supercharging while eliminating amino acid composition as a potential confounding factor

99 Chemical and amino acid composition as well as functional properties

100 able to obtain preparations of well balanced amino acid composition as well as proved functional prop

101 n article, the number of ECD/ETD product ion amino acid compositions as a function of nominal mass in

102 to random sequences with uniform and natural amino acid compositions, as observed by a lower average

103 tive analogues of compstatin by altering its amino acid composition at positions 4 and 9.

104 o acids in the triad likewise imply that the amino acid composition at the nucleotide site could modu

105 gested that the resulting correlations among amino acid compositions at different sequence positions

106 the present study, copolymers with modified amino acid compositions (based on the binding motif of m

107 We compare the amino acid composition between groups of regulated and u

108 ions were consistently lower, and nucleotide/amino acid composition bias and codon bias higher, in mo

109 results from this same mechanism, as well as amino acid composition bias and increases in AT content.

110 itution of the LBD with peptides of the same amino acid composition but different sequence is not spe

111 its virocidal activity, which depends on its amino acid composition but not its primary sequence or c

112 he differentiation of peptides with the same amino acid composition but with a different sequence (ho

113 Using four aS variants with identical amino acid compositions but rearranged pseudorepeat moti

114 ble, such as global characteristics like the amino-acid composition (C), predicted secondary structur

115 , these two short peptides with an identical amino acid composition can adopt two distinct amphipathi

116 vealed a putative receptor binding site with amino acid compositions characteristic for polysaccharid

117 equences are characterized by a less diverse amino acid composition compared to typically observed se

118 Amino acid composition comparison of the predicted tubul

119 Its unique amino acid composition containing Asp-Ser (DS)-rich repe

120 to obtain wines of higher quality since must amino acid composition could affect the wine volatile co

121 astodon samples pass these tests, absence of amino acid composition data, lack of evidence for peptid

122 The UPLC-MS/MS results showed that the amino acid compositions decreased after plasma treatment

123 logically conserved "orthosteric site" whose amino acid composition defines the pharmacological speci

124 Here we show that LCR abundance and amino acid composition depend largely, but not exclusive

125 e murine gastric mucosa, suggesting that the amino acid composition-dependent oxidant-quenching role

126 igands; instead, the pockets yield different amino acid compositions despite very similar distributio

127 but also functional homologues, albeit their amino acid composition differences are likely to influen

128 ein concentration, expression domain, or ICD amino acid composition does not account for the differen

129 Ure2 and Sup35 prion domains while retaining amino acid composition does not block prion formation, i

130 er significantly in primary sequence but not amino acid composition, equally activate DFF40/CAD.

131 Ae has been determined to 1.45 A, and L7Ae's amino acid composition, evolutionary conservation, funct

132 red small protein-like peptide with a simple amino acid composition features a temperature-driven alp

133 bias plays a significant role in shaping the amino acid composition for a large class of cellular pro

134 on that are derived from heuristics based on amino acid compositions for IDRs with low proline conten

135 RFCRYS utilizes mono-, di-, and tri-peptides amino acid compositions, frequencies of amino acids in d

136 case silk closely aligns with the predicted amino acid composition from the primary sequence of TuSp

137 rotein content, ash and minerals content and amino acid composition), functional properties (protein

138 igated for physico-chemical characteristics, amino acid composition, functional properties and antiox

139 e we investigate what other features, beyond amino acid composition, govern chain collapse.

140 The total amino acid composition had high proportions of Lys, Ala

141 Knowledge of how proteomic amino acid composition has changed over time is importan

142 ding the effects that particular active site amino acid compositions have on autodephosphorylation ra

143 The variant with the amino acid composition HEHEHE placed in the N-terminus g

144 discriminates between degradation signals by amino acid composition, implying the use of sequence-spe

145 tRNA abundance but there is no difference in amino acid composition in differentially expressed genes

146 cted nucleosomes and affects codon usage and amino acid composition in genes.

147 ation supported by precursor feeding on must amino acid composition in grapevines.

148 howed a remarkable degree of conservation of amino acid composition in spite of sequence differences.

149 hangers may be important determinants of the amino acid composition in the fetal circulation.

150 It has been proposed that the amino acid composition in the human variant of FOXP2 has

151 sis of 12- to 23-membered rings with varying amino acid compositions in one pot under mild reaction c

152 Analysis of the similarity based on the amino acid composition indicated the existence of differ

153 Comparison of their amino acid compositions indicates conservation of predom

154 ng or destabilizing effects, suggesting that amino acid composition influences mRNA stability.

155 relationship between intrinsic disorder and amino acid composition is emphasized.

156 dex increment, a substantial global shift in amino acid composition is required, which can naturally

157 electronic transport via peptides and their amino-acid composition is still absent.

158 into the predictor, the 'amphiphilic pseudo amino acid composition' is introduced to represent the s

159 type p27 IDR and two variants with identical amino acid compositions, kappa14 and kappa56, distinguis

160 that [URE3] formation is driven primarily by amino acid composition, largely independent of primary s

161 ionization (MALDI) extraction delay, peptide amino acid composition, matrix, and ammonium sulfate con

162 ys), this finding suggests that selection on amino acid composition may be a general feature of the e

163 within the paratope region and (b) tailored amino acid composition mimicking antibody binding-site c

164 reason, using a low-protein formula with an amino acid composition modified according on the estimat

165 a prion-forming domain with strongly biased amino acid composition, most notably enriched for Q or N

166 the primary sequence has been scrambled, the amino acid composition mutated, or the location of vario

167 s not block prion formation, indicating that amino acid composition, not primary sequence, is the pre

168 Overall, amino acid composition, nucleotide similarities, and rep

169 These results imply that conservation of amino acid composition occurs through amino acid replace

170 The discovery that the amino acid composition of a polypeptide, not the specifi

171 By modeling the preferences between the amino acid composition of a socket and knob, we undertak

172 Here we show the location and amino acid composition of all of the B-cell epitopes in

173 se of LC-MS/MS method for analysing the free amino acid composition of amaranth grain.

174 The amino acid composition of Asphodeline peshmeniana was we

175 The amino acid composition of BAM1 and BAM3 orthologs reflec

176 The amino acid composition of collagen is unique due to its

177 The amino acid composition of each region remains similar ac

178 ich can naturally explain the highly unusual amino acid composition of gamma-crystallins and their fu

179 This implies that the IDR content and the amino acid composition of IDRs experience negative selec

180 everal published estimates of the endogenous amino acid composition of ileal digesta in humans, to ou

181 size of this scaffold determines the unusual amino acid composition of its binding sites, mimicking t

182 crambled peptide (Mel-SCR) that contains the amino acid composition of melittin with minor rearrangem

183 rvature generation places constraints on the amino acid composition of membrane disruptive peptides.

184 Inspired by the amino acid composition of natural protein surfaces, we d

185 The amino acid composition of Nephila clavipes dragline silk

186 demonstrated that, properly represented, the amino acid composition of protein sequences contains the

187 this metabolic cycling has likely biased the amino acid composition of proteins across the S. cerevis

188 Third, overall amino acid composition of proteins closely resembles tRN

189 with a simple model of weak selection on the amino acid composition of proteins in which codon reassi

190 Amino acid composition of proteins varies substantially

191 Analysis of the amino acid composition of raw egg case silk closely alig

192 The (unknown) amino acid composition of residual proteins (~26% of tot

193 We found that the amino acid composition of synthesized proteins is as imp

194 ands was remarkably similar to the predicted amino acid composition of the AcSp1-like protein, which

195 protein structures showed differences in the amino acid composition of the active site that could exp

196 e dependence of substrate specificity on the amino acid composition of the active-site loop displays

197 essed VH and VL genes and by influencing the amino acid composition of the Ag binding site.

198 tumor-to-organ ratios were influenced by the amino acid composition of the binding surface of the tra

199 otein design force field by constraining the amino acid composition of the designed sequences to that

200 The resulting reduction in cognate amino acid composition of the enzymes comprising a parti

201 The amino acid composition of the fibroins extracted from th

202 g BLUF domains show little difference in the amino acid composition of the flavin binding pocket, the

203 S ranking was thus essentially driven by the amino acid composition of the food: soya-based food > pe

204 reducing the protein content of formula, the amino acid composition of the formula protein becomes im

205 ding accessibility of the modification site, amino acid composition of the glycosylation consensus se

206 Therefore, both the sequence length and the amino acid composition of the insert were important.

207 to interact with integrins is related to the amino acid composition of the integrin-binding loop in t

208 The proteomic amino acid composition of the Last Universal Ancestor (L

209 In this way, the amino acid composition of the ligand-binding site can be

210 derstand the relation between the length and amino acid composition of the luminal KASH domain, and t

211 calization as WT SNAP25, indicating that the amino acid composition of the mini-linker is not importa

212 However, the amino acid composition of the MSD core does influence th

213 The substantial modification in the amino acid composition of the must seems to be a crucial

214 GPCR activation, complementing the size and amino acid composition of the orthosteric pocket.

215 The amino acid composition of the paratope reflects the libr

216 Since the algorithm employed depends on the amino acid composition of the peptide and not its sequen

217 h of the interpeptide bridge, as well as the amino acid composition of the peptide, confers the maxim

218 n can occur is seen to depend heavily on the amino acid composition of the peptide.

219 ) can be accounted for with reference to the amino acid composition of the protein-based binding medi

220 l difference between the NOS isoforms is the amino acid composition of the pterin cofactor binding si

221 hidden semi-Markov model to characterize the amino acid composition of the signal, thus providing a c

222 [PSI+] formation is driven primarily by the amino acid composition of the Sup35p prion domain, and t

223 osed to originate from subtle differences in amino acid composition of the surface grooves on an amyl

224 We also observed that the amino acid composition of the V4 region contributes to t

225 : the V and J gene choice and the length and amino acid composition of the variable region.

226 ed to reveal protein secondary structure and amino acid composition of the virus surface.

227 nes the effects of changes in the length and amino acid composition of this linker on catalytic activ

228 Additionally, we found the inferred amino acid composition of this protein set in the LUA to

229 bicity, number of transmembrane helices, and amino acid composition of transmembrane segments.

230 ccurrence was shown to be conditioned by the amino acid composition of two surface-exposed alpha-heli

231 This "design rule" is consistent with the amino acid compositions of 1080 known cationic AMPs.

232 The amino acid compositions of bovine, porcine and fish gela

233 le most important source of variation in the amino acid compositions of functionally related proteins

234 he differential in the idealized "canonical" amino acid compositions of native and trap layers.

235 ology, and the correlation between the total amino acid compositions of proteins.

236 The amino acid compositions of proteobacterial proteins were

237 dy by Piez et al. in which they compared the amino acid compositions of rat skin and tail tendon type

238 Based on amino acid compositions of several peptides, the treS ge

239 The amino acid compositions of some protein regions impede t

240 We show that amino acid compositions of the channel significantly dif

241 The amino-acid composition of proteins dictates that many sy

242 table bonds) and hydrophobicity), and to the amino-acid composition of the caseins.

243 ides, revealing new details of the effect of amino acid composition on TGase substrates.

244 Given the biological relevance of their amino acid composition, one logical application for this

245 roteins, and most of these have very unusual amino acid composition or sequence.

246 cture, which may be caused by alterations in amino acid composition or solution conditions (e.g., tem

247 OM64, showing that slight differences in the amino acid composition or structure of the chaperones in

248 er, no significant changes in crystallinity, amino acid composition, or phenolic content occurred fol

249 form: is this phenomenon driven primarily by amino acid composition, or, as a recent computational an

250 derived the most probable parameters (e.g., amino acid composition, peptide hydrophobic content, and

251 assessed for chemical composition, including amino acids composition, phenolics content, as well as a

252 Our results indicate that specific amino acid composition plays a fundamental role in molec

253 aracterised by measurement of fatty acid and amino acid composition, primary and secondary lipid oxid

254 of the amino acid mixture, and provides both amino acid composition profiles and D/L ratios for ~11 a

255 t glyphosate application does not impact the amino acid composition, protein secondary structure or g

256 gene translation initiation signal, protein amino acid composition, protein structure, tRNA abundanc

257 zing the functional domain (FunD) and pseudo-amino acid composition (PseAA), a new strategy called Fu

258 -coupled information into the general pseudo-amino acid composition (PseAAC) and introducing the cova

259 gap dipeptide composition (g-gap DC), pseudo-amino acid composition (PseAAC), auto-correlation functi

260 special focus on the introduction of pseudo amino acid composition (PseAAC), its different modes and

261 equency of self-interactors as a function of amino acid composition ranged over five orders of magnit

262 n thought to rely mostly on their particular amino acid composition, rather than on their sequence.

263 on to stress granules is driven primarily by amino acid composition, rather than primary sequence.

264 own protein isoforms differing in C-terminal amino acid composition, referred to as RET9 and RET51.

265 Analysis of amino acid composition revealed that cocoa autolysates w

266 (EPSC) protein and its effect on structure (amino acid composition, secondary structure and electrop

267 hydrolysates or peptides are related to the amino acid composition, sequence and length.

268 molecular and structural attributes such as amino acid composition, sequence variants, and post-tran

269 nce of diverse protein features, such as its amino acid composition, sequence-order effects, terminal

270 We observed that amino acid compositions, sequence complexity, hydrophobi

271 These evolved bacteria with new-to-nature amino acid composition showed robust growth in the compl

272 Degree of hydrolysis (DH), amino acid composition, solubility, emulsion and foaming

273 be sub-divided by expression level, length, amino-acid composition, solubility, secondary structure

274 ictions to gain insights on the interplay of amino acid composition, structure, self-association, and

275 to compare proteins with markedly different amino acid compositions, such as transmembrane proteins

276 The predicted domain profile and amino acid composition suggest that its N-terminus may b

277 r of repeat units, as well as nucleotide and amino acid composition, suggesting that natural selectio

278 xin protein of comparable size but different amino acid composition, suggesting that the physical pre

279 Using this X-ray data, we analyze the amino acid composition surrounding the 19 Xe sites and c

280 These mbtins are shorter, and have different amino acid compositions, than the characterized mbtin fr

281 We introduce a method to estimate ancestral amino acid composition that is based on expectation-maxi

282 simulations of two archetypal sequences with amino acid compositions that are mixtures of charged, hy

283 we show that despite their nearly identical amino acid composition, the functional roles of Lhcb1 an

284 e significant changes in sequence length and amino acid composition, the general architecture of the

285 rich proteins is predominantly determined by amino acid composition, the nucleation and oligopeptide

286 ces by the Sec61 translocon depends on helix amino acid composition, the positions of the amino acids

287 mbers are the components of the conventional amino acid composition; the next 2lambda numbers are a s

288 In addition to the peptide amino acid composition, this study investigated several

289 d a random sequence polypeptide of identical amino acid composition to CDelta4.

290 ss a CDR-H3 repertoire similar in length and amino acid composition to the DFL16.1 subset of the wild

291 anking the R&R Consensus have diversified in amino-acid composition to a much greater extent in RR-2

292 ements of the protein isolates, as a similar amino acid composition was found among the protein isola

293 The amino acid composition was less affected by both geograp

294 compared to the original flour, although the amino acid composition was similar to that of the flour.

295 By focusing exclusively on amino acid composition, we have developed a prion aggreg

296 The differences in protein and amino acid composition were not significant, and there w

297 eins, including electrostatic properties and amino acid composition, were calculated from their amino

298 c core of TNfn3 appears to be related to its amino acid composition, which makes it more fluid-like.

299 acid monomer of the Ocr dimer has an unusual amino acid composition with 34 negatively charged side c

300 to be very effective in estimating ancestral amino acid composition, with accuracy improving as the n