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1 d, such as a G4, to be displayed to apurinic/apyrimidinic 1 (APE1) and stalling on the fold to recrui
3 nohistochemistry while the number of apurnic/apyrimidinic abasic sites (AP sites) was also quantified
4 SV-1 DNA polymerase (UL30) exhibits apurinic/apyrimidinic and 5'-deoxyribose phosphate lyase activiti
5 e catalytic subunit (UL30) exhibits apurinic/apyrimidinic and 5'-deoxyribose phosphate lyase activiti
6 NA polymerase (Pol) (UL30) exhibits apurinic/apyrimidinic (AP) and 5'-deoxyribose phosphate (dRP) lya
7 example, it is capable of cleaving apurinic/apyrimidinic (AP) DNA via a beta-elimination reaction, a
15 nd 8-oxoG DNA glycosylase 1 (OGG1), apurinic/apyrimidinic (AP) endonuclease 1, DNA polymerase beta, a
16 A base excision repair protein, Apurinic/apyrimidinic (AP) endonuclease 2 (APE2, APN2, or APEX2),
17 responsible for >/=95% of the total apurinic/apyrimidinic (AP) endonuclease activity in human cells.
20 with uracil-DNA glycosylase (UDG), apurinic/apyrimidinic (AP) endonuclease and DNA ligase I, pol iot
24 y reported domain homologous to the apurinic/apyrimidinic (AP) endonuclease family and shows nicking
25 IV is the archetype for a conserved apurinic/apyrimidinic (AP) endonuclease family that primes DNA re
28 ve identified and characterised two apurinic/apyrimidinic (AP) endonuclease paralogues in the human p
29 ay employs a mitochondrial class II apurinic/apyrimidinic (AP) endonuclease to cleave the DNA backbon
30 adenine-DNA glycosylase activity by apurinic/apyrimidinic (AP) endonuclease using murine homolog of M
31 abasic site repair and between the apurinic/apyrimidinic (AP) endonuclease, Ape1, and the 8-oxoguani
32 recombinant CSB and the major human apurinic/apyrimidinic (AP) endonuclease, APE1, physically and fun
33 ns from the BER pathway, such as an apurinic-apyrimidinic (AP) endonuclease, as turnover-enhancing co
34 ort overexpression of the S. mutans apurinic/apyrimidinic (AP) endonuclease, Smx, in Escherichia coli
37 NEIL1, Nei, Fpg, Nth, and NTH1) and apurinic/apyrimidinic (AP) endonucleases (Apn1, APE1, and Nfo), t
38 diates, organisms are equipped with apurinic/apyrimidinic (AP) endonucleases and 3'-nucleases that in
39 In Saccharomyces cerevisiae, the apurinic/apyrimidinic (AP) endonucleases Apn1 and Apn2 act as alt
40 , uracil residues are eliminated by apurinic/apyrimidinic (AP) endonucleases in the nucleotide incisi
44 id DNA that carries a site-specific apurinic/apyrimidinic (AP) lesion as template, we have found that
46 mine glycol DNA glycosylase with an apurinic/apyrimidinic (AP) lyase activity encoded by the Escheric
47 Drosophila S3 also possesses an apurinic/apyrimidinic (AP) lyase activity in which the enzyme cat
48 been found to contain an associated apurinic/apyrimidinic (AP) lyase activity that cleaves phosphodie
49 t of glycosylases has an associated apurinic/apyrimidinic (AP) lyase activity that further processes
50 5' deoxyribosephosphate (5'dRP) and apurinic/apyrimidinic (AP) lyase activity, and showed this activi
54 se III (hNth1) is a DNA glycosylase/apurinic/apyrimidinic (AP) lyase that initiates base excision rep
55 initiated by the DNA N-glycosylase/apurinic/apyrimidinic (AP) lyase, human NTH1 (hNTH1), the homolog
56 1), the two major DNA N-glycosylase/apurinic/apyrimidinic (AP) lyases involved in the repair of oxida
57 cerevisiae N-glycosylase-associated apurinic/apyrimidinic (AP) lyases that recognize a wide variety o
58 lexes each containing two synthetic apurinic/apyrimidinic (AP) residues, positioned on opposite stran
60 or less frequently an A opposite an apurinic/apyrimidinic (AP) site but was unable to extend the DNA
62 enome-wide mapping of occurrence of Apurinic/apyrimidinic (AP) site damage, binding of BER proteins,
65 is pathway involves formation of an apurinic/apyrimidinic (AP) site in the DNA, which is further proc
66 step in BER is the processing of an apurinic/apyrimidinic (AP) site intermediate by an AP endonucleas
70 o DNA repair lyase active sites for apurinic/apyrimidinic (AP) site processing, one within the N-term
71 otein for both O6-methylguanine and apurinic/apyrimidinic (AP) site repair as determined by biochemic
72 ed a substrate containing a reduced apurinic/apyrimidinic (AP) site resistant to beta-elimination and
74 reated by the deaminase, forming an apurinic/apyrimidinic (AP) site that initiates the DNA repair pro
75 5hmC) when paired with a guanine, leaving an apyrimidinic (AP) site that is subsequently incised by t
76 al nucleotide capture, avoidance of apurinic/apyrimidinic (AP) site toxicity and coupling of damage-s
77 ost prevalent lesions in DNA is the apurinic/apyrimidinic (AP) site, which is derived from the cleava
79 facilitates DNA repair by reducing apurinic/apyrimidinic (AP) sites after MNNG exposure and facilita
80 lian AP-endonuclease (APE1) repairs apurinic/apyrimidinic (AP) sites and strand breaks with 3' blocks
90 base effects DNA strand cleavage at apurinic/apyrimidinic (AP) sites arising via simple glycosylase a
92 anded DNA treated with PAP contains apurinic/apyrimidinic (AP) sites due to the removal of adenine.
93 sphate (dRP) groups from 5'-incised apurinic/apyrimidinic (AP) sites during base excision repair.
94 or protein responsible for excising apurinic/apyrimidinic (AP) sites from DNA, cleaves 5' to natural
96 endonuclease 1 (APE1) to cleave at apurinic/apyrimidinic (AP) sites in a collection of tandem DNA re
98 major role in initiating repair of apurinic/apyrimidinic (AP) sites in DNA by catalyzing hydrolytic
101 human Ape1 protein is to incise at apurinic/apyrimidinic (AP) sites in DNA via site-specific endonuc
103 etect traces of aldehyde-containing apurinic/apyrimidinic (AP) sites in nucleic acids has been develo
104 the PARP inhibitor is dependent on apurinic/apyrimidinic (AP) sites in the DNA and the presence of P
107 terase on DNA containing 3'-incised apurinic/apyrimidinic (AP) sites to remove the product trans -4-h
108 ribose-5-phosphate at an incised 5' apurinic/apyrimidinic (AP) sites via a beta-elimination reaction.
109 t, deoxyinosine, and the numbers of apurinic/apyrimidinic (AP) sites were identical in DNA isolated f
113 S damage to DNA is the formation of apurinic/apyrimidinic (AP) sites, which without removal are known
118 ey produce [e.g., 8-oxo-guanine and apurinic/apyrimidinic (AP) sites] have been linked to the pathoge
119 , is a DNA glycosylase with abasic (apurinic/apyrimidinic (AP)) lyase activity and specifically cleav
121 stos induces the DNA repair enzyme, apurinic/apyrimidinic (AP)-endonuclease, in isolated mesothelial
126 tivities of uracil DNA glycosylase (UDG) and apyrimidinic/apurinic endonuclease (APE) digest G:U mism
127 hat uses human uracil DNA glycosylase (UDG), apyrimidinic/apurinic endonuclease (APE), and DNA polyme
128 activity that removes the faulty base and an apyrimidinic/apurinic lyase activity that introduces a s
135 e endonucleolytic activity of human apurinic/apyrimidinic endonuclease (AP endo) is a major factor in
139 ied 12 property-based motifs in the apurinic/apyrimidinic endonuclease (APE) family of DNA-repair enz
144 ll lines accumulated high levels of apurinic/apyrimidinic endonuclease (APE-1/Ref-1, redox effector-1
145 singly, this enzyme was found to be apurinic/apyrimidinic endonuclease (APE1) (), a well characterize
150 hMYH is associated in vivo with apurinic/apyrimidinic endonuclease (APE1), proliferating cell nuc
152 shock protein 70 (HSP70) with human apurinic/apyrimidinic endonuclease (HAP1) was demonstrated by coi
154 air enzyme, Redox effector factor-1/apurinic/apyrimidinic endonuclease (Ref-1/Ape), facilitates DNA b
155 opting a G-quadruplex fold in which apurinic/apyrimidinic endonuclease 1 (APE1) binds, but inefficien
157 Although it is presumed that the apurinic/apyrimidinic endonuclease 1 (APE1) generates DNA strand
158 both processes, a central role for apurinic/apyrimidinic endonuclease 1 (APE1) has been demonstrated
166 we determined the ability of human apurinic/apyrimidinic endonuclease 1 (APE1) to cleave at apurinic
169 P-BER), including DNA glycosylases, apurinic/apyrimidinic endonuclease 1 (APE1), DNA polymerase beta
170 ntial base excision repair protein, apurinic/apyrimidinic endonuclease 1 (APE1), plays an important r
171 d by DNA polymerase beta (Polbeta), apurinic/apyrimidinic endonuclease 1 (APE1), poly(ADP-ribose) pol
172 hosphate dehydrogenase (GAPDH) with apurinic/apyrimidinic endonuclease 1 (Ape1), the major oxidized D
173 ical undamaged bases and stimulated apurinic/apyrimidinic endonuclease 1 (APE1)-mediated DNA incision
176 sential base-excision repair enzyme apurinic/apyrimidinic endonuclease 1 (APE1)/redox effector factor
177 lases and the downstream processing apurinic/apyrimidinic endonuclease 1 (APE1)] can be tested simult
178 ession of critical DNA repair genes apurinic/apyrimidinic endonuclease 1 (Apex1) and DNA polymerase b
180 ins, we demonstrate here a role for apurinic/apyrimidinic endonuclease 1 in pri-miRNA processing and
182 r mechanisms underlying the role of apurinic/apyrimidinic endonuclease 1 in these processes are still
183 cosidic bonds on RNA and that human apurinic/apyrimidinic endonuclease 1 incises RNA abasic sites in
185 show that endonuclease activity of apurinic/apyrimidinic endonuclease 1 is required for the processi
187 rmediate, the DNA is channeled from apurinic/apyrimidinic endonuclease 1 to DNA polymerase beta and t
188 acterization of the interactomes of apurinic/apyrimidinic endonuclease 1 with RNA and other proteins,
190 e reactive geometry observed in the apurinic/apyrimidinic endonuclease 1, explaining the dephosphoryl
193 tiate radiotherapy, we investigated apurinic/apyrimidinic endonuclease 1/redox factor-1 (APE1/Ref-1)
194 or the base excision repair enzyme, apurinic/apyrimidinic endonuclease 2 (APE2) protein develop relat
196 E2, a nuclease related to APE1, the apurinic/apyrimidinic endonuclease acting in base excision repair
197 ly of DNA repair enzymes, including apurinic/apyrimidinic endonuclease activity and repair activities
198 d with an increase in mitochondrial apurinic/apyrimidinic endonuclease activity in both H2O2- and O2-
200 p53 did not influence mitochondrial apurinic/apyrimidinic endonuclease activity measured by incision
204 e transcription regulator FoxD3 and apurinic/apyrimidinic endonuclease and the presence of chromosome
206 the base excision repair-associated apurinic/apyrimidinic endonuclease APE1, independent of the BRCA2
207 NA damage is initiated by the major apurinic/apyrimidinic endonuclease Ape1, which specifically recog
209 asic site; this site was incised by apurinic/apyrimidinic endonuclease creating a nick with 3'-hydrox
210 r ung and mutY glycosylase and xthA apurinic/apyrimidinic endonuclease genes in H. pylori, mutants of
211 age and the additional depletion of apurinic/apyrimidinic endonuclease I (APE1) confers hypersensitiv
212 dehydrogenase and DNA repair enzyme apurinic/apyrimidinic endonuclease I protect smooth muscle cells
213 ition to its primary activity as an apurinic/apyrimidinic endonuclease in BER, Ape1 also possesses 3'
216 nd U/G mispairs in double-stranded DNA; (ii) apyrimidinic endonuclease that cleaves double-stranded D
217 wo endonuclease III homologs and an apurinic/apyrimidinic endonuclease) that might account for this a
218 cil DNA glycosylase (UL2), cellular apurinic/apyrimidinic endonuclease, and DNA ligase IIIalpha-XRCC1
219 3-methyladenine DNA glycosylase and apurinic/apyrimidinic endonuclease, and, paradoxically, with incr
221 a ribosomal protein that is also an apurinic/apyrimidinic endonuclease, binds to YA in ovary and embr
222 e excision repair proteins, such as apurinic/apyrimidinic endonuclease, DNA polymerase beta, and liga
223 an enzymes: uracil-DNA glycosylase, apurinic/apyrimidinic endonuclease, DNA polymerase beta, flap end
224 DNA glycosylase, strand scission by apurinic/apyrimidinic endonuclease, DNA resynthesis and ligation.
225 tions of uracil-DNA glycosylase and apurinic/apyrimidinic endonuclease, human pol gamma was able to f
226 ssed at high levels relative to the apurinic/apyrimidinic endonuclease, increases spontaneous mutatio
230 und that recombinant purified human apurinic/apyrimidinic endonuclease-1 (APE1) and APE1 from human c
235 tly reported that the expression of apurinic/apyrimidinic endonuclease-1/redox factor-1 (APE-1/Ref-1)
236 extraribosomal functions, including apurnic-apyrimidinic endonuclease-like activity suggested to be
246 that is related in sequence to the apurinic-apyrimidinic endonucleases that participate in DNA repai
247 abasic sites, which are excised by apurinic/apyrimidinic endonucleases, eventually generating double
248 I, FAPY DNA glycosylase, both known apurinic/apyrimidinic endonucleases, or DNA deoxyribophosphodiest
252 , an enzyme required for processing apurinic/apyrimidinic (known as abasic) sites, is also involved i
254 oli has adenine DNA glycosylase and apurinic/apyrimidinic lyase activities on A/G- and A/7,8-dihydro-
256 However, MutY(Dr) exhibits limited apurinic/apyrimidinic lyase activity and can form only weak coval
257 s a single strand break through its apurinic/apyrimidinic lyase activity to initiate base excision re
259 with adenine that the abasic site (apurinic/apyrimidinic) lyase activity is alternatively regulated
262 over, in vitro assays revealed that apurinic/apyrimidinic nuclease 1 provides nearly maximum stimulat
263 Thus, under our assay conditions, apurinic/apyrimidinic nuclease 1-mediated stimulation or other me
265 ichia coli exonuclease III (Exo III) removes apyrimidinic or apurinic (AP) sites and 3'-phosphate ter
267 e1 recruits pol beta to the incised apurinic/apyrimidinic site and stimulates 5'-dRP excision by pol
268 ent enzyme-DNA intermediate complex with the apyrimidinic site created by the glycosylase; and (iii)
269 abasic site is further processed by apurinic/apyrimidinic site endonuclease 1 (APE1) to create a sing
270 the T4 pyrimidine dimer glycosylase/apurinic/apyrimidinic site lyase (T4-pdg) has been exploited, nam
272 ances resection by BLM-DNA2, and an apurinic/apyrimidinic site stimulates resection by BLM-DNA2 and D
273 mes more tightly toward its product apurinic/apyrimidinic site than the substrate, whereas full-lengt
275 anodeoxyguanosine adduct and (2) an apurinic/apyrimidinic site, and the initiation of repair was exam
276 ackbone in DNA on the 5' side of an apurinic/apyrimidinic site, was monitored by FCCS using a double-
279 nliganded or bound to an abasic (apurinic or apyrimidinic) site, until now there was no structure of
281 Ung H187D binding to thymine-, uracil-, and apyrimidinic-site-containing DNA was (dT20) = (dT19-U) >
282 MPG binding affinity toward Hx and apurinic/apyrimidinic sites and thus is essential for the Hx clea
283 rate single-strand breaks (SSBs) at apurinic/apyrimidinic sites do not form DSBs immediately after me
284 pe1 protein initiates the repair of apurinic/apyrimidinic sites during mammalian base excision repair
285 nzyme that initiates the removal of apurinic/apyrimidinic sites from DNA, excises 3' replication-bloc
286 We further demonstrate that most apurinic/apyrimidinic sites in highly transcribed DNA are derived
287 re we show that the accumulation of apurinic/apyrimidinic sites is greatly enhanced in highly transcr
288 tY with GO mispaired with T, G, and apurinic/apyrimidinic sites may be involved in the regulation of
290 ase of the dRP residue from incised apurinic/apyrimidinic sites to produce a substrate for DNA ligase
291 eaved and religated a DNA substrate in which apyrimidinic sites were simultaneously incorporated at e
292 ability to be covalently trapped to apurinic/apyrimidinic sites within duplex DNA under reducing cond
293 mage, as determined by the level of apurinic/apyrimidinic sites, also decreased significantly followi
294 of oxidative DNA adducts, mutagenic apurinic/apyrimidinic sites, and expression of base excision DNA
295 which fail to seal SSBs induced at apurinic/apyrimidinic sites, exhibit strongly elevated levels of
300 tion mutant, the 5'-incision at AP (apurinic/apyrimidinic) sites is not detectable, supporting the no