コーパス検索結果 (1語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 ents into the 3D Allen mouse brain reference atlas.
2 encyclopedias and represent these as a drug atlas.
3 ed data exchange with UniProt and Expression Atlas.
4 rectal adenocarcinomas, in The Cancer Genome Atlas.
5 sed GBM were obtained from The Cancer Genome Atlas.
6 cross 14 cancer types from The Cancer Genome Atlas.
7 arch (n = 41) and mapped onto a common brain atlas.
8 these data requires a standard 3D reference atlas.
9 modern societies drawn from the Ethnographic Atlas.
10 sive hamster tissue and cell line proteomics atlas.
11 ors and normal pancreas in The Cancer Genome Atlas.
12 cross 33 cancer types from The Cancer Genome Atlas.
13 tracts were segmented using a diffusion MRI atlas.
14 hite patients published by The Cancer Genome Atlas.
15 2 human brain samples from Allen Human Brain Atlas.
16 e transcriptomic data from The Cancer Genome Atlas.
17 s after registration to a standard reference atlas.
18 fied using data from the total cancer genome atlas.
19 eosin (H&E) specimens from The Cancer Genome Atlas.
20 on colorectal tumors from The Cancer Genome Atlas.
21 vice area (TSA) as defined by the Pittsburgh Atlas.
22 rgent expression across a diverse expression atlas.
23 inZero can help to chart the phosphoproteome atlas.
24 pression and CNA data from The Cancer Genome Atlas.
25 previously available in any other expression atlas.
26 breast cancer images from The Cancer Genome Atlas.
27 Kreiner's myeloarchitectonic-based histology atlas.
28 lity on external data from The Cancer Genome Atlas.
29 idual organs to create a full molecular cell atlas.
30 o generate reference maps for the human cell atlas.
31 ation resource, the Kidney Tubule Expression Atlas.
32 n a more accurate cytoarchitectonic auditory atlas.
33 tability for integration into reference cell atlases.
34 ovel cell type and states in the age of cell atlases.
35 w only 7% have been depicted in standard MRI atlases.
37 pleted the 52-week comparative phase with an ATLAS-2M screening plasma HIV-1 RNA less than 50 copies
38 r thousands of subjects in The Cancer Genome Atlas(7-13), we present evidence that subsampled tumor R
40 of the VMI network to the Allen Human Brain Atlas, a whole-brain transcriptome-wide atlas of cortica
42 esent here FC-R2, a comprehensive expression atlas across a broadly defined human transcriptome, incl
43 ingle-cell and single-nucleus transcriptomic atlases across various rat tissues undergoing aging and
49 in alignment with an annotated histological atlas and can be browsed down to cellular resolution.
52 e expression profiles from The Cancer Genome Atlas and essential survival gene datasets from The Canc
53 tumor/normal pairs across The Cancer Genome Atlas and found that MBNL1 was down-regulated in several
56 nd cell types, we built a comprehensive gene atlas and studied tissue specificity of genes in cattle.
58 onal areas of the transverse foramina of the atlas and the left carotid canal in StW 573 further sugg
59 ne data repositories (e.g. The Cancer Genome Atlas and Trans-Omics for Precision Medicine) have the p
60 levant anatomic volumes from the mouse brain atlas and ultrastructurally established interaction dist
61 een an impressive increase in resources-from atlases and databases to biological models-that is progr
62 e include gene model annotations, expression atlases and gene networks that provide information about
63 g single-cell, multiparametric, longitudinal atlases and integrating them with clinical outcomes shou
64 t cellular states to existing brain taxonomy atlases and sheds light on the elusive mechanisms of rem
67 egion across the sample used to generate the atlas, and a statistical comparison of a chosen subset o
68 independent data set from The Cancer Genomic Atlas, and demonstrated that high asparagine synthetase
70 Anatomy and function of the early hominin atlas, and thus, its evolutionary history, are poorly do
71 otated in an existing scRNA-seq gastrulation atlas, and use this approach to guide ESC differentiatio
72 atlas level contours based on the reference atlases, and direct graphical and tabular comparison of
73 either omitted or misidentified in previous atlases; and (3) comprehensive fiber pathway maps of cor
74 histochemistry images from the Human Protein Atlas as the source of subcellular location information,
77 imensional convolutional neural networks and atlas-based image processing were used for extraction of
79 nce Atlas (mouse) (Dong, The Allen reference atlas, (book + CD-ROM): A digital color brain atlas of t
80 their arrangement in corresponding reference atlases: Brain Maps 4.0 (BM4, rat) (Swanson, The Journal
83 tology has important applications in ex vivo atlas building and in modeling the link between microstr
86 plex traits in cattle, and our transcriptome atlas can serve as a primary source for biological inter
87 ransplant listings (2006-2016) and Dartmouth Atlas catchment areas to assess the optimal method of de
92 sis and gene expression in The Cancer Genome Atlas complemented by single-cell analysis of six indepe
93 1, and TREM2 loci and curate a comprehensive atlas comprising ATAC-seq, ChIP-seq, RNA-seq, and proteo
97 rspective, the first chimpanzee white matter atlas, constructed from in vivo chimpanzee diffusion-wei
99 of biomarker positivity in The Cancer Genome Atlas data suggests the potential for a similar precisio
101 rogression, an analysis of The Cancer Genome Atlas Database indicates that KRAS mutated colorectal ca
102 three atlas databases, and the Hammers_mith atlas database transferred to new datasets best regardle
103 matched healthy tissues in The Cancer Genome Atlas database were analyzed to select shared FSPs.
105 FreeSurfer), using three publicly available atlas databases (Hammers_mith, Desikan-Killiany-Tourvill
106 automatic image segmentation methods and few atlas databases exist for analysing structural T1-weight
107 ternational Consortium and The Cancer Genome Atlas databases with CRISPR/Cas9-mediated depletion of t
108 l leave-one-out analyses in two of the three atlas databases, and the Hammers_mith atlas database tra
109 Bioinformatics analysis of The Cancer Genome Atlas dataset demonstrated that a high MDSC score in HCC
113 comprehensive three-dimensional white matter atlas depicting fiber pathways that were either omitted
114 ortem brain microarray data from Allen Brain Atlas (donors n = 6) from 22 brain regions to investigat
115 mic data repositories like The Cancer Genome Atlas, Encyclopedia of DNA Elements, Bioconductor's Anno
117 ably, >65% of GBM cases in The Cancer Genome Atlas express the non-responder (ERN1, IGFBP3, IGFBP5) g
118 nalysis of single-cell and Allen Human Brain Atlas expression data reveal somatostatin interneurons a
122 his study provides a comprehensive cell-type atlas for the early intra-mammalian stage of this devast
123 escribe a human single-nuclei transcriptomic atlas for the substantia nigra (SN), generated by sequen
126 hive and genomic data from The Cancer Genome Atlas from 110 patients from five institutions with lowe
127 ogs, tissue segmentation maps and a cortical atlas generated from Jerzy Kreiner's myeloarchitectonic-
131 chieved using image registration to a single atlas image with reference segmentations of 18 volume of
134 vide the oxidative stress innate immune cell atlas in neuroinflammatory disease and report the discov
135 ta delineate a high-resolution transcriptome atlas in the entire male GSC lineage: the most dramatic
136 cing has opened the way to systematic tissue atlases in health and disease, but as the scale of data
140 tool to explore this comprehensive skin cell atlas, including epithelial and stromal cells such as fi
141 cs, imaging technologies, and the Human Cell Atlas initiative have together enabled a systems-level m
142 ncatula RNA-sequencing-based gene expression atlas integrated with various analytical tools, includin
144 Measurements and Main Results: The resulting atlas is composed of a high percentage of epithelial cel
149 e and rat brain flatmaps are cerebral cortex atlas level contours based on the reference atlases, and
150 nnotated in the Mechanism and Catalytic Site Atlas (M-CSA), and compare our results with those in pre
152 and the first version of the Allen Reference Atlas (mouse) (Dong, The Allen reference atlas, (book +
156 ere to construct a detailed, high-resolution atlas of cell populations and assess variability in cell
157 studied strains to construct a comprehensive atlas of cell-cycle and asexual development, revealing h
158 ensory neuron, we generated a transcriptomic atlas of cells traversing the primary somatosensory neur
159 ques to construct and explore a quantitative atlas of cellular architecture for the zebrafish posteri
167 ucture of the Netherlands has constructed an atlas of drug-metabolite associations for 87 commonly pr
168 and non-smokers, we generate a comprehensive atlas of epithelial cell types and states, connect these
170 e RNA FISH to provide a systematic molecular atlas of full-thickness skin, determining gene expressio
176 graphic sleep activity and creates the first atlas of human sleep using recordings from the first sle
177 ross different species, and generated a cell atlas of isoform dynamics during the development of reti
181 ther, our findings provide a high-resolution atlas of m(5)C in murine leukemia virus and reveal a fun
182 rn genome browser to present a comprehensive atlas of m(6)A methylation sites, histone modification s
184 pproach to generate a single-cell-resolution atlas of mtDNA content in mammalian tissues was validate
187 roup, and co-occurrence analysis provided an atlas of potential relationships between microbes and ho
189 ng (scRNA-seq) to build a comprehensive cell atlas of the adult Drosophila ovary that contains transc
191 Here, we present a multi-omic epigenetic atlas of the adult human brain through profiling of sing
192 c tool for establishing a comprehensive cell-atlas of the brain, although its capacity for retrograde
194 amputated control digit tips and generate an atlas of the cell types participating in digit tip regen
198 , we developed a single-cell mRNA sequencing atlas of the human lung from 11.5 to 21 weeks of develop
203 Our study provides a spatially-resolved cell atlas of the small intestinal stroma and exposes Lgr5+ v
204 our objective was to develop a comprehensive atlas of the transcriptome of limb tendons in adult mice
205 In sum, our study provides a comprehensive atlas of TRN neurons at single-cell resolution and links
207 onstruction of comprehensive transcriptional atlases of adult tissues and of developing embryos from
208 informative and accessible three-dimensional atlases of cancer transitions for a diverse set of tumor
210 novations can be used for future single-cell atlases of ctenophores and analyses of neuronal evolutio
211 The partition function computation uses atlases of interface subassembly landscapes, rapidly gen
217 nt of two new ontologies - the Kidney Tissue Atlas Ontology and the Ontology of Precision Medicine an
218 ed as part of the Open Pediatric Brain Tumor Atlas (OpenPBTA) Project to determine recurrent fusions
219 l Cancer Genome Consortium/The Cancer Genome Atlas Pan-Cancer Analysis of Whole Genomes Consortium, w
220 er regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium P
221 mon fMRI methods such as cluster correction, atlas parcellation, and anatomical searchlight are biase
222 Here, we introduce an interactive expression atlas, Physcomitrella Expression Atlas Tool (PEATmoss),
223 annabinoid signaling (from Allen Human Brain Atlas postmortem tissue) were associated with spatial pa
227 l thickness in 2D, and the resultant laminar atlas provides an unprecedented level of precision and d
231 prostate cancer data from The Cancer Genome Atlas revealed that YAP1 and androgen receptor transcrip
233 lioma Genome Atlas RNAseq, the Cancer Genome Atlas RNAseq and GSE16011 databases, were included in th
234 ncluding data from the Chinese Glioma Genome Atlas RNAseq, the Cancer Genome Atlas RNAseq and GSE1601
235 dataset to derive the South American Drought Atlas (SADA) over the continent south of 12 degrees S.
236 fication and characterization using a single atlas segmentation performs well compared to manual segm
239 Furthermore, the identified fiber-based atlas structure might contribute to future postoperative
240 iant call files (VCF) from the Cancer Genome Atlas (TCGA) and found 12,141 incorrectly annotated MNVs
241 or the cancers profiled in The Cancer Genome Atlas (TCGA) and pathways from the Molecular Signatures
242 analyses for patients from The Cancer Genome Atlas (TCGA) and reveal divergent patterns for sex bias
243 of the mutations are from The Cancer Genome Atlas (TCGA) and the Catalogue Of Somatic Mutations In C
244 yses of primary tumors and The Cancer Genome Atlas (TCGA) data revealed an activated FOXM1-directed p
246 ed in the ovarian cancer Tumor Cancer Genome Atlas (TCGA) database and in residual human ovarian canc
249 ion of the prostate cancer The Cancer Genome Atlas (TCGA) dataset, (b) chromatin immunoprecipitation,
250 y cause of CA, we analyzed The Cancer Genome Atlas (TCGA) genomic and transcriptomic data for genes e
252 tumors by projects such as The Cancer Genome Atlas (TCGA) has provided important information regardin
254 cell carcinoma (ccRCC) by The Cancer Genome Atlas (TCGA) identified UQCRH as the top-ranked gene sho
257 MS/MS) proteomics data and The Cancer Genome Atlas (TCGA) related data to discover the possible dispa
258 hed checkpoint treatment naive Cancer Genome Atlas (TCGA) samples where cytolytic activity (CYT) impa
259 , we performed analyses of The Cancer Genome Atlas (TCGA) transcriptome data for different classes of
261 nical trial, a cohort from the Cancer Genome Atlas (TCGA), and a Memorial Sloan Kettering (MSK) obser
262 nome Consortium (ICGC) and The Cancer Genome Atlas (TCGA), we analyze patterns of chromothripsis acro
263 nome Consortium (ICGC) and The Cancer Genome Atlas (TCGA), we characterized mutational signatures usi
264 nome Consortium (ICGC) and The Cancer Genome Atlas (TCGA), which aggregated whole-genome sequencing d
265 le cancer studies, such as The Cancer Genome Atlas (TCGA), with both RNA-Seq and array-based platform
271 trate here using data from The Cancer Genome Atlas that a substantial number of genes implicated in c
272 o our tool, we provide a gene prioritization atlas that includes mantis-ml's predictions across ten d
274 a mechanisms, we built an area postrema cell atlas through single-nucleus RNA sequencing, revealing a
277 ouse tract tracing data from the Allen Brain Atlas to confirm the network's underlying structural con
278 e regulation to a single-cell RNA-seq tissue atlas to generate a tissue-specific DNA methylation refe
279 phase diagrams that serve as a thermodynamic atlas to indicate which compounds are energy minima in r
281 over a vagal/glossopharyngeal sensory neuron atlas to map, ablate, and control specific afferent popu
283 expression atlas, Physcomitrella Expression Atlas Tool (PEATmoss), that unifies publicly available e
285 t genome sequence, alongside gene expression atlases, variation datasets and sequenced mutant populat
291 other melanoma subtypes in The Cancer Genome Atlas, we predict that elevated redox capacity is a gene
292 nd transcriptome data from the Cancer Genome Atlas, we show that cluster analysis on model explanatio
294 Tabula Muris Senis(2)-or 'Mouse Ageing Cell Atlas'-which follows on from the original Tabula Muris(3
295 ll support the creation of the Kidney Tissue Atlas, which aims to provide a comprehensive molecular,
296 comprised of over 70,000 samples, the FC-R2 atlas will empower other researchers to investigate func
297 These findings illustrate how this laminar atlas will provide a link between single-neuron morpholo
298 sion 4 (MS-DIAL 4), a comprehensive lipidome atlas with retention time, collision cross-section and t
300 has revealed the most complete early hominin atlas yet found, having been cemented by breccia in its